Wall clock time and date at job start Mon Mar 30 2020 02:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 110.28502 * 2 1 4 4 C 1.54378 * 110.41031 * 122.17752 * 2 1 3 5 5 N 1.48556 * 104.59344 * 142.79271 * 4 2 1 6 6 C 1.46898 * 111.00242 * 200.96111 * 5 4 2 7 7 C 1.53003 * 109.47063 * 285.42165 * 6 5 4 8 8 C 1.50703 * 109.47038 * 179.97438 * 7 6 5 9 9 H 1.08006 * 120.00159 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00120 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00089 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99938 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47297 * 269.99556 * 12 10 8 14 14 H 1.48503 * 109.47261 * 149.99737 * 12 10 8 15 15 H 1.48500 * 109.47454 * 29.99730 * 12 10 8 16 16 C 1.48559 * 104.22633 * 320.52364 * 5 4 2 17 17 C 1.54256 * 110.32625 * 237.87100 * 2 1 3 18 18 H 1.09005 * 110.32298 * 122.10674 * 17 2 1 19 19 C 1.53001 * 110.32405 * 359.89392 * 17 2 1 20 20 N 1.46901 * 109.47106 * 177.90881 * 19 17 2 21 21 H 1.09006 * 109.47083 * 182.12873 * 1 2 3 22 22 H 1.08999 * 109.47316 * 302.12949 * 1 2 3 23 23 H 1.09000 * 109.46955 * 62.13410 * 1 2 3 24 24 H 1.08999 * 110.40679 * 24.01977 * 4 2 1 25 25 H 1.08996 * 110.41685 * 261.57909 * 4 2 1 26 26 H 1.08996 * 109.47442 * 165.42286 * 6 5 4 27 27 H 1.08996 * 109.46826 * 45.42284 * 6 5 4 28 28 H 1.09003 * 109.46825 * 60.00196 * 7 6 5 29 29 H 1.08996 * 109.47396 * 299.99770 * 7 6 5 30 30 H 0.96998 * 119.99255 * 0.02562 * 11 10 8 31 31 H 1.08994 * 110.41412 * 158.26228 * 16 5 4 32 32 H 1.08998 * 110.40771 * 280.58451 * 16 5 4 33 33 H 1.08996 * 109.47512 * 297.91398 * 19 17 2 34 34 H 1.09001 * 109.46969 * 57.91251 * 19 17 2 35 35 H 1.00896 * 110.99873 * 56.04985 * 20 19 17 36 36 H 1.00900 * 110.99932 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0225 0.0000 4 6 2.0684 -0.7705 1.2246 5 7 3.2720 -1.4805 0.7206 6 6 3.6119 -2.6191 1.5843 7 6 4.2414 -2.1056 2.8809 8 6 4.5895 -3.2736 3.7673 9 1 4.3821 -4.2814 3.4389 10 6 5.1717 -3.0557 4.9979 11 7 5.4238 -1.8285 5.3981 12 14 5.6039 -4.5035 6.0962 13 1 4.4497 -4.8196 6.9757 14 1 6.7821 -4.1572 6.9312 15 1 5.9234 -5.6850 5.2552 16 6 2.8829 -1.9400 -0.6375 17 6 2.0658 -0.7693 -1.2250 18 1 2.7068 -0.1245 -1.8263 19 6 0.9050 -1.3016 -2.0676 20 7 1.4351 -1.9869 -3.2540 21 1 -0.3633 -1.0270 0.0382 22 1 -0.3634 0.5465 0.8703 23 1 -0.3633 0.4803 -0.9085 24 1 1.3264 -1.4855 1.5801 25 1 2.3412 -0.0772 2.0202 26 1 4.3201 -3.2676 1.0687 27 1 2.7075 -3.1811 1.8172 28 1 3.5331 -1.4570 3.3966 29 1 5.1457 -1.5435 2.6481 30 1 5.1997 -1.0768 4.8275 31 1 3.7690 -2.1272 -1.2439 32 1 2.2701 -2.8391 -0.5735 33 1 0.3175 -2.0029 -1.4751 34 1 0.2722 -0.4710 -2.3803 35 1 2.0759 -2.7207 -2.9915 36 1 0.6873 -2.3475 -3.8275 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708872792.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:19 Heat of formation + Delta-G solvation = -40.418116 kcal Electronic energy + Delta-G solvation = -14488.512242 eV Core-core repulsion = 12198.446655 eV Total energy + Delta-G solvation = -2290.065587 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.66936 -36.82436 -35.32113 -33.88479 -31.47012 -29.70373 -27.33142 -25.97213 -24.73660 -23.04385 -21.88758 -19.93630 -18.91017 -17.49672 -16.89735 -16.22512 -15.86102 -15.71727 -15.50258 -14.90480 -14.54419 -14.39783 -13.85942 -13.46967 -13.33570 -13.13266 -13.11847 -12.67631 -12.36712 -11.97781 -11.92876 -11.76545 -11.60126 -11.48677 -11.36516 -10.74487 -10.57033 -9.59531 -9.48825 -8.73303 -6.43758 1.50666 1.60708 1.78636 2.54167 3.03577 3.13180 3.47081 3.52647 3.79654 4.00532 4.16032 4.22527 4.33506 4.41877 4.43191 4.53739 4.57348 4.64996 4.73442 4.75532 4.84124 4.93303 5.14513 5.17903 5.21248 5.24508 5.31938 5.42630 5.81865 5.94319 6.10150 6.15228 6.22075 6.52667 6.58213 7.39707 8.67723 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.054415 B = 0.006001 C = 0.005681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.440476 B = 4664.928324 C = 4927.572769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 H 0.081 0.919 4 C 0.037 3.963 5 N -0.530 5.530 6 C 0.077 3.923 7 C 0.024 3.976 8 C -0.623 4.623 9 H 0.051 0.949 10 C -0.038 4.038 11 N -0.936 5.936 12 Si 1.124 2.876 13 H -0.271 1.271 14 H -0.281 1.281 15 H -0.268 1.268 16 C 0.037 3.963 17 C -0.079 4.079 18 H 0.082 0.918 19 C 0.075 3.925 20 N -0.859 5.859 21 H 0.055 0.945 22 H 0.057 0.943 23 H 0.081 0.919 24 H 0.036 0.964 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.022 0.978 28 H -0.014 1.014 29 H -0.013 1.013 30 H 0.254 0.746 31 H 0.078 0.922 32 H 0.039 0.961 33 H 0.029 0.971 34 H 0.089 0.911 35 H 0.341 0.659 36 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.217 0.176 -14.499 18.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.105 4.105 3 H 0.099 0.901 4 C -0.091 4.091 5 N -0.254 5.254 6 C -0.051 4.051 7 C -0.014 4.014 8 C -0.661 4.661 9 H 0.069 0.931 10 C -0.235 4.235 11 N -0.573 5.573 12 Si 0.944 3.056 13 H -0.196 1.196 14 H -0.206 1.206 15 H -0.193 1.193 16 C -0.091 4.091 17 C -0.098 4.098 18 H 0.100 0.900 19 C -0.055 4.055 20 N -0.389 5.389 21 H 0.074 0.926 22 H 0.076 0.924 23 H 0.100 0.900 24 H 0.054 0.946 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.040 0.960 28 H 0.004 0.996 29 H 0.006 0.994 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.057 0.943 33 H 0.047 0.953 34 H 0.107 0.893 35 H 0.154 0.846 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.789 0.820 -13.266 16.507 hybrid contribution -1.483 -0.757 -0.698 1.805 sum -11.273 0.063 -13.963 17.946 Atomic orbital electron populations 1.21908 0.92890 1.02109 1.02897 1.21887 0.96929 0.99245 0.92484 0.90098 1.23186 0.90664 0.97171 0.98054 1.65343 1.33583 1.23546 1.02930 1.21968 0.97951 0.91525 0.93646 1.19017 0.93968 0.95673 0.92712 1.22466 1.44656 0.93988 1.04970 0.93061 1.27535 0.93395 1.03618 0.98988 1.70880 1.46889 0.99377 1.40125 0.82870 0.77206 0.71337 0.74201 1.19607 1.20639 1.19261 1.23194 0.99073 0.96851 0.89932 1.21893 0.96647 0.95885 0.95366 0.89975 1.21932 0.94983 0.98354 0.90262 1.58730 1.22733 1.36281 1.21195 0.92609 0.92438 0.90036 0.94583 0.92527 0.92080 0.95967 0.99574 0.99448 0.93653 0.90320 0.94253 0.95308 0.89281 0.84630 0.83557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 7.94 71.98 0.57 -2.13 16 2 C -0.09 -2.16 3.65 -9.90 -0.04 -2.19 16 3 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 4 C 0.04 1.28 5.46 86.45 0.47 1.75 16 5 N -0.53 -20.27 5.34 -881.54 -4.70 -24.97 16 6 C 0.08 3.47 4.77 86.30 0.41 3.88 16 7 C 0.02 1.32 4.40 29.85 0.13 1.45 16 8 C -0.62 -37.07 9.11 25.60 0.23 -36.83 16 9 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 10 C -0.04 -2.28 5.46 84.65 0.46 -1.81 16 11 N -0.94 -60.05 13.65 21.45 0.29 -59.76 16 12 Si 1.12 51.29 29.90 68.60 2.05 53.34 16 13 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 14 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 15 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 16 C 0.04 1.09 5.16 86.45 0.45 1.54 16 17 C -0.08 -1.87 3.31 -9.90 -0.03 -1.91 16 18 H 0.08 2.04 8.14 -2.38 -0.02 2.03 16 19 C 0.08 1.39 4.97 86.30 0.43 1.81 16 20 N -0.86 -14.65 9.62 -186.72 -1.80 -16.45 16 21 H 0.05 1.08 6.81 -2.38 -0.02 1.06 16 22 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.08 1.21 6.74 -2.39 -0.02 1.19 16 24 H 0.04 1.25 7.44 -2.39 -0.02 1.23 16 25 H 0.06 2.16 7.85 -2.39 -0.02 2.15 16 26 H 0.06 2.71 8.08 -2.39 -0.02 2.69 16 27 H 0.02 0.99 7.77 -2.39 -0.02 0.97 16 28 H -0.01 -0.83 7.33 -2.39 -0.02 -0.85 16 29 H -0.01 -0.78 8.01 -2.39 -0.02 -0.80 16 30 H 0.25 16.69 7.22 -92.71 -0.67 16.02 16 31 H 0.08 2.26 8.14 -2.39 -0.02 2.25 16 32 H 0.04 1.11 7.66 -2.39 -0.02 1.09 16 33 H 0.03 0.54 6.84 -2.39 -0.02 0.52 16 34 H 0.09 1.42 6.67 -2.39 -0.02 1.41 16 35 H 0.34 5.86 8.19 -89.70 -0.73 5.13 16 36 H 0.35 4.50 9.08 -89.69 -0.81 3.68 16 Total: -1.00 -68.33 280.06 -1.46 -69.79 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -0.39 Total: 12.48 kcal Atomic # 6 Polarization: -37.52 SS G_CDS: 3.09 Total: -34.43 kcal Atomic # 7 Polarization: -94.97 SS G_CDS: -6.21 Total: -101.18 kcal Atomic # 14 Polarization: 51.29 SS G_CDS: 2.05 Total: 53.34 kcal Total: -68.33 -1.46 -69.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708872792.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.370 kcal (2) G-P(sol) polarization free energy of solvation -68.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds