Wall clock time and date at job start Mon Mar 30 2020 02:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 110.36669 * 2 1 4 4 C 1.54373 * 110.32322 * 237.81321 * 2 1 3 5 5 N 1.48559 * 104.59710 * 217.25462 * 4 2 1 6 6 C 1.46898 * 111.00354 * 159.04335 * 5 4 2 7 7 C 1.53002 * 109.47225 * 54.57910 * 6 5 4 8 8 C 1.50698 * 109.47042 * 180.02562 * 7 6 5 9 9 H 1.07994 * 120.00130 * 359.97438 * 8 7 6 10 10 C 1.37882 * 119.99884 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99688 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00176 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47215 * 89.99742 * 12 10 8 14 14 H 1.48494 * 109.47160 * 210.00076 * 12 10 8 15 15 H 1.48503 * 109.46759 * 329.99668 * 12 10 8 16 16 C 1.48563 * 104.22085 * 39.48488 * 5 4 2 17 17 C 1.54263 * 110.32004 * 122.17911 * 2 1 3 18 18 H 1.09002 * 110.32388 * 237.79037 * 17 2 1 19 19 C 1.53001 * 110.41021 * 359.95511 * 17 2 1 20 20 N 1.46901 * 109.47206 * 183.51484 * 19 17 2 21 21 H 1.09001 * 109.47351 * 297.82342 * 1 2 3 22 22 H 1.09012 * 109.47170 * 57.82067 * 1 2 3 23 23 H 1.08997 * 109.47740 * 177.82030 * 1 2 3 24 24 H 1.09000 * 110.41279 * 98.47547 * 4 2 1 25 25 H 1.09003 * 110.51689 * 336.08608 * 4 2 1 26 26 H 1.08998 * 109.47344 * 174.58412 * 6 5 4 27 27 H 1.09001 * 109.47045 * 294.58351 * 6 5 4 28 28 H 1.08998 * 109.47369 * 300.00486 * 7 6 5 29 29 H 1.09001 * 109.46748 * 60.00260 * 7 6 5 30 30 H 0.97005 * 119.99557 * 180.02562 * 11 10 8 31 31 H 1.09006 * 110.40976 * 201.74203 * 16 5 4 32 32 H 1.08990 * 110.41077 * 79.29791 * 16 5 4 33 33 H 1.09002 * 109.47236 * 303.51728 * 19 17 2 34 34 H 1.08999 * 109.46779 * 63.51776 * 19 17 2 35 35 H 1.00901 * 110.99481 * 56.04107 * 20 19 17 36 36 H 1.00893 * 111.00440 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0218 0.0000 4 6 2.0662 -0.7711 -1.2252 5 7 3.2692 -1.4830 -0.7224 6 6 3.6067 -2.6219 -1.5866 7 6 3.7578 -2.1391 -3.0306 8 6 4.1034 -3.3076 -3.9173 9 1 4.2055 -4.2956 -3.4933 10 6 4.2903 -3.1151 -5.2698 11 7 4.1674 -1.9117 -5.7858 12 14 4.7194 -4.5633 -6.3688 13 1 3.4709 -5.1825 -6.8817 14 1 5.5431 -4.0912 -7.5106 15 1 5.4853 -5.5676 -5.5877 16 6 2.8805 -1.9423 0.6360 17 6 2.0657 -0.7704 1.2244 18 1 2.7081 -0.1267 1.8254 19 6 0.9063 -1.3012 2.0700 20 7 1.4372 -1.9574 3.2723 21 1 -0.3634 0.4797 0.9089 22 1 -0.3634 0.5474 -0.8699 23 1 -0.3634 -1.0269 -0.0391 24 1 2.3394 -0.0781 -2.0208 25 1 1.3237 -1.4849 -1.5822 26 1 4.5440 -3.0666 -1.2522 27 1 2.8122 -3.3661 -1.5336 28 1 2.8205 -1.6944 -3.3650 29 1 4.5524 -1.3948 -3.0836 30 1 4.2985 -1.7764 -6.7374 31 1 3.7669 -2.1309 1.2417 32 1 2.2647 -2.8392 0.5721 33 1 0.2613 -0.4728 2.3630 34 1 0.3313 -2.0208 1.4872 35 1 2.0274 -1.3288 3.7964 36 1 0.6905 -2.3170 3.8476 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708872794.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:22 Heat of formation + Delta-G solvation = -11.467874 kcal Electronic energy + Delta-G solvation = -14493.109890 eV Core-core repulsion = 12204.299680 eV Total energy + Delta-G solvation = -2288.810210 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.25768 -35.26032 -33.33185 -32.34658 -29.92919 -28.29052 -25.99552 -24.50037 -23.17914 -21.43602 -19.82448 -18.71793 -16.47175 -16.14493 -15.41820 -14.87725 -14.46130 -14.40831 -14.09297 -13.70686 -12.53047 -12.48928 -12.37277 -12.05539 -11.98560 -11.55647 -11.31592 -10.93483 -10.78498 -10.56457 -10.49107 -10.38288 -10.10580 -9.82637 -9.27237 -9.08664 -8.72748 -8.31199 -7.75237 -5.96463 -3.98574 3.34414 3.40411 3.44327 4.41031 4.45447 4.61469 4.82238 5.01120 5.13395 5.30625 5.39526 5.49970 5.53855 5.61679 5.77774 5.83800 5.93464 6.08800 6.22086 6.24094 6.32436 6.35995 6.53579 6.54838 6.64636 6.99906 7.02122 7.30569 7.53466 7.57813 7.79213 7.92501 8.11111 8.47752 9.08525 9.64893 11.15021 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.053674 B = 0.006133 C = 0.005785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.541318 B = 4564.642858 C = 4839.042605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 H 0.076 0.924 4 C 0.043 3.957 5 N -0.516 5.516 6 C 0.053 3.947 7 C 0.025 3.975 8 C -0.521 4.521 9 H 0.054 0.946 10 C 0.058 3.942 11 N -0.894 5.894 12 Si 0.892 3.108 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.274 1.274 16 C 0.049 3.951 17 C -0.086 4.086 18 H 0.072 0.928 19 C 0.068 3.932 20 N -0.851 5.851 21 H 0.053 0.947 22 H 0.055 0.945 23 H 0.056 0.944 24 H 0.082 0.918 25 H 0.042 0.958 26 H 0.062 0.938 27 H 0.020 0.980 28 H 0.017 0.983 29 H 0.024 0.976 30 H 0.260 0.740 31 H 0.073 0.927 32 H 0.040 0.960 33 H 0.029 0.971 34 H 0.072 0.928 35 H 0.338 0.662 36 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.466 3.305 14.706 16.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 H 0.095 0.905 4 C -0.085 4.085 5 N -0.240 5.240 6 C -0.075 4.075 7 C -0.013 4.013 8 C -0.560 4.560 9 H 0.072 0.928 10 C -0.143 4.143 11 N -0.534 5.534 12 Si 0.720 3.280 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.199 1.199 16 C -0.079 4.079 17 C -0.106 4.106 18 H 0.091 0.909 19 C -0.063 4.063 20 N -0.381 5.381 21 H 0.072 0.928 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.100 0.900 25 H 0.060 0.940 26 H 0.080 0.920 27 H 0.039 0.961 28 H 0.035 0.965 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.058 0.942 33 H 0.047 0.953 34 H 0.091 0.909 35 H 0.151 0.849 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.611 3.224 14.021 15.834 hybrid contribution -0.968 -0.608 -0.251 1.170 sum -7.579 2.615 13.771 15.935 Atomic orbital electron populations 1.21938 0.95327 1.01770 1.01327 1.21935 0.95018 0.99665 0.94785 0.90546 1.23090 0.91685 0.97374 0.96324 1.65475 1.32040 1.24551 1.01907 1.22465 0.98844 0.90337 0.95818 1.19141 0.97549 0.96739 0.87850 1.21209 1.47564 0.94520 0.92669 0.92780 1.24995 0.95505 0.95652 0.98172 1.69978 1.50053 1.20826 1.12509 0.86592 0.78375 0.82754 0.80270 1.20735 1.21202 1.19863 1.22992 0.98159 0.95468 0.91276 1.21918 0.95950 0.96985 0.95720 0.90949 1.22044 0.95939 0.96674 0.91624 1.58665 1.25648 1.43047 1.10699 0.92780 0.92570 0.92546 0.89995 0.93961 0.91962 0.96148 0.96474 0.95801 0.93041 0.90877 0.94154 0.95314 0.90913 0.84950 0.85035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 7.94 37.16 0.29 -1.38 16 2 C -0.09 -1.30 3.65 -89.24 -0.33 -1.63 16 3 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 4 C 0.04 0.78 4.65 -2.19 -0.01 0.77 16 5 N -0.52 -10.07 5.49 -229.97 -1.26 -11.33 16 6 C 0.05 1.19 5.00 -3.82 -0.02 1.17 16 7 C 0.02 0.66 4.69 -27.88 -0.13 0.53 16 8 C -0.52 -15.17 9.11 -34.44 -0.31 -15.49 16 9 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 10 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -27.36 13.29 55.43 0.74 -26.62 16 12 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 16 C 0.05 0.80 5.87 -2.18 -0.01 0.79 16 17 C -0.09 -1.13 3.23 -89.23 -0.29 -1.42 16 18 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 19 C 0.07 0.74 4.92 -3.82 -0.02 0.72 16 20 N -0.85 -8.34 9.45 -10.37 -0.10 -8.43 16 21 H 0.05 0.52 6.71 -51.93 -0.35 0.18 16 22 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 23 H 0.06 0.66 6.86 -51.93 -0.36 0.30 16 24 H 0.08 1.59 7.67 -51.93 -0.40 1.19 16 25 H 0.04 0.79 7.69 -51.93 -0.40 0.39 16 26 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 27 H 0.02 0.46 7.88 -51.93 -0.41 0.05 16 28 H 0.02 0.48 6.84 -51.93 -0.36 0.12 16 29 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.04 0.68 7.45 -51.93 -0.39 0.30 16 33 H 0.03 0.28 6.59 -51.93 -0.34 -0.06 16 34 H 0.07 0.86 6.89 -51.93 -0.36 0.51 16 35 H 0.34 2.89 8.99 -39.29 -0.35 2.54 16 36 H 0.34 2.65 9.08 -39.30 -0.36 2.29 16 LS Contribution 281.16 15.07 4.24 4.24 Total: -1.00 -30.86 281.16 -8.47 -39.33 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -6.14 Total: 0.15 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: -0.92 Total: -14.35 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: -0.62 Total: -46.39 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.86 -8.47 -39.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708872794.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.860 kcal (2) G-P(sol) polarization free energy of solvation -30.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds