Wall clock time and date at job start Mon Mar 30 2020 03:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47202 * 2 1 4 4 C 1.53001 * 109.47130 * 240.00339 * 2 1 3 5 5 C 1.50694 * 109.47432 * 65.85277 * 4 2 1 6 6 H 1.08011 * 119.99815 * 5.09069 * 5 4 2 7 7 C 1.37870 * 120.00578 * 185.08693 * 5 4 2 8 8 N 1.31521 * 119.99774 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00473 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46959 * 60.00495 * 9 7 5 11 11 H 1.48498 * 109.47322 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47393 * 300.00172 * 9 7 5 13 13 N 1.46903 * 109.47441 * 120.00158 * 2 1 3 14 14 C 1.46841 * 111.00204 * 190.90027 * 13 2 1 15 15 C 1.53042 * 109.52291 * 174.15860 * 14 13 2 16 16 C 1.53120 * 109.27614 * 59.18064 * 15 14 13 17 17 C 1.53116 * 109.15977 * 302.34675 * 16 15 14 18 18 H 1.09001 * 109.50403 * 297.70777 * 17 16 15 19 19 N 1.46902 * 109.50228 * 177.59674 * 17 16 15 20 20 C 1.46844 * 110.99747 * 66.69019 * 13 2 1 21 21 H 1.08995 * 109.47375 * 59.99818 * 1 2 3 22 22 H 1.09009 * 109.47062 * 299.99671 * 1 2 3 23 23 H 1.08998 * 109.47202 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47504 * 185.85819 * 4 2 1 25 25 H 1.09005 * 109.46836 * 305.85614 * 4 2 1 26 26 H 0.97002 * 120.00301 * 179.97438 * 8 7 5 27 27 H 1.08995 * 109.46818 * 294.17807 * 14 13 2 28 28 H 1.09009 * 109.46179 * 54.14733 * 14 13 2 29 29 H 1.08993 * 109.50076 * 179.12241 * 15 14 13 30 30 H 1.09002 * 109.50192 * 299.24128 * 15 14 13 31 31 H 1.08997 * 109.52249 * 62.25103 * 16 15 14 32 32 H 1.08999 * 109.52022 * 182.37248 * 16 15 14 33 33 H 1.00902 * 111.00286 * 59.99842 * 19 17 16 34 34 H 1.00895 * 111.00417 * 183.95436 * 19 17 16 35 35 H 1.08999 * 109.46597 * 305.85616 * 20 13 2 36 36 H 1.08999 * 109.46212 * 65.82493 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6595 0.0679 -2.4754 6 1 1.1819 1.0311 -2.3711 7 6 1.9210 -0.4394 -3.7304 8 7 2.5021 -1.6124 -3.8576 9 14 1.4500 0.5391 -5.2503 10 1 2.1568 1.8450 -5.2370 11 1 1.8350 -0.2203 -6.4670 12 1 -0.0169 0.7702 -5.2554 13 7 2.0197 -0.6925 1.1994 14 6 3.4643 -0.4917 1.3701 15 6 3.9118 -1.1015 2.7005 16 6 3.5809 -2.5965 2.7081 17 6 2.0780 -2.7798 2.4801 18 1 1.5266 -2.3138 3.2968 19 7 1.7610 -4.2133 2.4285 20 6 1.6837 -2.1213 1.1561 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 0.5138 0.8901 23 1 -0.3633 -1.0276 0.0005 24 1 3.1249 -0.8129 -1.1985 25 1 1.5935 -1.7141 -1.3033 26 1 2.6858 -1.9696 -4.7405 27 1 3.9975 -0.9751 0.5515 28 1 3.6855 0.5757 1.3672 29 1 4.9867 -0.9660 2.8197 30 1 3.3892 -0.6090 3.5206 31 1 4.1336 -3.0959 1.9123 32 1 3.8596 -3.0264 3.6702 33 1 2.0153 -4.6712 3.2909 34 1 0.7860 -4.3606 2.2149 35 1 0.6116 -2.2377 0.9978 36 1 2.2251 -2.5971 0.3384 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709956871.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:56 Heat of formation + Delta-G solvation = -37.063085 kcal Electronic energy + Delta-G solvation = -14944.454418 eV Core-core repulsion = 12654.534317 eV Total energy + Delta-G solvation = -2289.920102 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.45226 -36.92673 -34.86244 -33.83513 -31.26559 -29.29359 -28.87489 -25.77542 -24.77327 -23.16174 -21.26245 -20.07039 -18.58367 -16.88046 -16.73273 -16.36807 -16.08799 -15.73270 -15.10209 -14.97254 -14.60238 -14.04375 -13.78948 -13.58578 -13.32070 -12.84238 -12.73648 -12.64366 -12.47607 -12.25942 -11.84723 -11.73109 -11.59739 -11.45243 -11.24470 -11.02227 -10.55503 -9.58458 -9.10412 -8.19794 -6.31534 1.37944 1.41045 1.48806 2.39156 2.97550 3.12263 3.66685 3.84824 3.99355 4.15916 4.24512 4.36855 4.48722 4.55962 4.59815 4.69836 4.84068 4.90130 4.97621 5.01943 5.10193 5.12711 5.17851 5.24610 5.39205 5.42358 5.50101 5.59601 5.74901 6.04991 6.17384 6.36218 6.39491 6.66795 6.85403 7.37165 8.91045 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.041333 B = 0.007760 C = 0.007620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.254698 B = 3607.465756 C = 3673.464521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.086 3.914 3 H 0.067 0.933 4 C 0.014 3.986 5 C -0.533 4.533 6 H 0.064 0.936 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.964 3.036 10 H -0.267 1.267 11 H -0.286 1.286 12 H -0.265 1.265 13 N -0.524 5.524 14 C 0.048 3.952 15 C -0.103 4.103 16 C -0.111 4.111 17 C 0.103 3.897 18 H 0.052 0.948 19 N -0.856 5.856 20 C 0.064 3.936 21 H 0.053 0.947 22 H 0.067 0.933 23 H 0.040 0.960 24 H -0.023 1.023 25 H -0.009 1.009 26 H 0.262 0.738 27 H 0.005 0.995 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.354 0.646 34 H 0.347 0.653 35 H 0.065 0.935 36 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.015 -0.170 13.916 13.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.022 4.022 3 H 0.085 0.915 4 C -0.024 4.024 5 C -0.571 4.571 6 H 0.082 0.918 7 C -0.199 4.199 8 N -0.575 5.575 9 Si 0.788 3.212 10 H -0.191 1.191 11 H -0.211 1.211 12 H -0.189 1.189 13 N -0.248 5.248 14 C -0.081 4.081 15 C -0.142 4.142 16 C -0.149 4.149 17 C -0.009 4.009 18 H 0.070 0.930 19 N -0.388 5.388 20 C -0.065 4.065 21 H 0.072 0.928 22 H 0.086 0.914 23 H 0.059 0.941 24 H -0.004 1.004 25 H 0.010 0.990 26 H 0.070 0.930 27 H 0.024 0.976 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.062 0.938 32 H 0.103 0.897 33 H 0.168 0.832 34 H 0.160 0.840 35 H 0.084 0.916 36 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -0.673 -0.109 13.616 13.633 hybrid contribution -0.214 -0.067 -1.342 1.360 sum -0.888 -0.176 12.275 12.308 Atomic orbital electron populations 1.21593 0.93804 1.00921 1.01245 1.21684 0.96286 0.96899 0.87317 0.91454 1.19479 0.93694 0.95245 0.94016 1.21564 1.39020 1.04707 0.91826 0.91780 1.25998 0.95113 0.96015 1.02815 1.70124 1.43781 1.19456 1.24162 0.85519 0.79166 0.78613 0.77883 1.19145 1.21116 1.18949 1.62340 1.14152 1.10549 1.37750 1.22162 0.87889 1.00753 0.97264 1.21528 1.01546 0.94891 0.96200 1.21585 0.94758 0.96540 1.01983 1.21216 0.96462 0.87944 0.95268 0.93007 1.58545 1.26827 1.11389 1.42065 1.21958 0.99946 0.88092 0.96488 0.92774 0.91365 0.94087 1.00443 0.99044 0.92975 0.97640 0.90650 0.89815 0.89984 0.93789 0.89655 0.83166 0.84010 0.91622 0.97493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.53 8.97 71.98 0.65 -3.89 16 2 C 0.09 3.69 2.32 44.91 0.10 3.80 16 3 H 0.07 2.88 7.97 -2.39 -0.02 2.87 16 4 C 0.01 0.76 3.57 29.85 0.11 0.86 16 5 C -0.53 -30.58 8.32 25.60 0.21 -30.37 16 6 H 0.06 3.49 7.31 -2.90 -0.02 3.47 16 7 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 8 N -0.93 -58.52 13.29 21.45 0.28 -58.24 16 9 Si 0.96 44.94 29.54 68.60 2.03 46.97 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 12 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 13 N -0.52 -19.41 4.60 -871.12 -4.00 -23.42 16 14 C 0.05 1.65 5.15 86.33 0.44 2.09 16 15 C -0.10 -2.66 6.09 30.65 0.19 -2.48 16 16 C -0.11 -2.90 5.58 30.67 0.17 -2.73 16 17 C 0.10 2.86 3.41 44.97 0.15 3.02 16 18 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 19 N -0.86 -21.09 9.25 -168.46 -1.56 -22.65 16 20 C 0.06 2.35 4.08 86.33 0.35 2.70 16 21 H 0.05 2.18 7.12 -2.39 -0.02 2.16 16 22 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 23 H 0.04 1.58 6.46 -2.39 -0.02 1.56 16 24 H -0.02 -1.36 6.62 -2.39 -0.02 -1.38 16 25 H -0.01 -0.53 6.82 -2.38 -0.02 -0.55 16 26 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 27 H 0.01 0.22 6.79 -2.39 -0.02 0.20 16 28 H 0.08 2.47 8.01 -2.38 -0.02 2.46 16 29 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.35 6.63 9.04 -89.69 -0.81 5.82 16 34 H 0.35 7.86 9.00 -89.70 -0.81 7.05 16 35 H 0.07 2.41 6.25 -2.39 -0.01 2.40 16 36 H 0.01 0.31 6.70 -2.39 -0.02 0.29 16 Total: -1.00 -66.37 276.18 -0.97 -67.33 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -0.55 Total: 16.63 kcal Atomic # 6 Polarization: -29.47 SS G_CDS: 2.84 Total: -26.63 kcal Atomic # 7 Polarization: -99.03 SS G_CDS: -5.28 Total: -104.30 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -66.37 -0.97 -67.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709956871.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.271 kcal (2) G-P(sol) polarization free energy of solvation -66.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds