Wall clock time and date at job start Mon Mar 30 2020 03:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46904 * 109.47085 * 2 1 4 4 C 1.47964 * 110.99977 * 190.00344 * 3 2 1 5 5 C 1.53939 * 86.17985 * 222.41810 * 4 3 2 6 6 N 1.46900 * 113.73265 * 138.07757 * 5 4 3 7 7 C 1.46900 * 110.99503 * 156.89951 * 6 5 4 8 8 H 1.08995 * 109.47586 * 35.00637 * 7 6 5 9 9 C 1.53005 * 109.47181 * 274.99918 * 7 6 5 10 10 C 1.53002 * 109.46648 * 155.00453 * 7 6 5 11 11 C 1.50706 * 109.47153 * 294.99361 * 10 7 6 12 12 H 1.07998 * 119.99503 * 0.02562 * 11 10 7 13 13 C 1.37871 * 120.00434 * 180.02562 * 11 10 7 14 14 N 1.31516 * 119.99826 * 359.72891 * 13 11 10 15 15 Si 1.86800 * 120.00406 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47364 * 179.72558 * 15 13 11 17 17 H 1.48508 * 109.46883 * 299.72681 * 15 13 11 18 18 H 1.48497 * 109.46870 * 59.72491 * 15 13 11 19 19 C 1.48188 * 111.07001 * 90.57211 * 3 2 1 20 20 H 1.09006 * 109.46980 * 299.99328 * 1 2 3 21 21 H 1.08999 * 109.47571 * 59.99751 * 1 2 3 22 22 H 1.09001 * 109.46933 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46980 * 240.00672 * 2 1 3 24 24 H 1.08999 * 109.47571 * 120.00249 * 2 1 3 25 25 H 1.08998 * 113.75952 * 108.10080 * 4 3 2 26 26 H 1.08999 * 113.86050 * 336.75029 * 4 3 2 27 27 H 1.09004 * 113.73246 * 269.26043 * 5 4 3 28 28 H 1.00892 * 110.99857 * 280.85676 * 6 5 4 29 29 H 1.09001 * 109.46894 * 60.00465 * 9 7 6 30 30 H 1.09002 * 109.46592 * 180.02562 * 9 7 6 31 31 H 1.08996 * 109.46870 * 300.00309 * 9 7 6 32 32 H 1.09004 * 109.47178 * 175.00151 * 10 7 6 33 33 H 1.08993 * 109.47411 * 54.99833 * 10 7 6 34 34 H 0.97000 * 120.00236 * 0.27947 * 14 13 11 35 35 H 1.08999 * 113.75794 * 23.23275 * 19 3 2 36 36 H 1.09007 * 113.82427 * 251.81126 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4789 1.4315 -0.2400 5 6 3.5230 2.4997 0.8676 6 7 4.6526 2.3447 1.7939 7 6 4.9721 3.6186 2.4521 8 1 4.0531 4.1780 2.6266 9 6 5.9044 4.4361 1.5556 10 6 5.6629 3.3425 3.7891 11 6 4.7015 2.6447 4.7165 12 1 3.6984 2.4203 4.3852 13 6 5.1026 2.2929 5.9878 14 7 6.3258 2.5615 6.3894 15 14 3.9112 1.4274 7.1372 16 1 4.5834 1.1542 8.4328 17 1 2.7272 2.2939 7.3668 18 1 3.4758 0.1463 6.5255 19 6 2.2102 1.8827 1.3827 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 3.7501 1.8095 -1.2257 26 1 3.9980 0.5087 0.0190 27 1 3.4132 3.5194 0.4982 28 1 4.4661 1.6231 2.4738 29 1 5.4124 4.6327 0.6031 30 1 6.1418 5.3810 2.0443 31 1 6.8235 3.8766 1.3812 32 1 5.9794 4.2850 4.2360 33 1 6.5337 2.7081 3.6240 34 1 6.9446 3.0107 5.7925 35 1 2.3557 1.0914 2.1181 36 1 1.4695 2.6206 1.6912 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709974536.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:42 Heat of formation + Delta-G solvation = 14.145444 kcal Electronic energy + Delta-G solvation = -14515.421388 eV Core-core repulsion = 12227.721855 eV Total energy + Delta-G solvation = -2287.699533 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.80476 -36.12706 -33.15413 -32.12308 -29.31414 -27.07933 -25.92733 -25.41710 -22.97462 -21.39683 -19.81406 -19.46788 -16.78153 -15.88387 -15.73720 -15.16767 -14.31510 -13.76252 -13.59921 -13.44292 -12.93487 -12.45031 -12.44296 -12.05429 -11.82183 -11.58678 -11.34531 -11.06093 -11.01874 -10.82995 -10.67832 -10.49041 -10.20653 -10.14350 -9.51508 -8.75470 -8.57173 -8.37314 -7.72991 -6.39676 -4.09669 3.39900 3.41275 3.60021 4.04012 4.50490 4.66671 4.87035 4.99553 5.22892 5.27988 5.41544 5.44026 5.56807 5.64094 5.77132 5.84216 5.85114 5.92838 5.98862 6.07880 6.13148 6.18436 6.29319 6.46004 6.47613 6.76537 6.81141 7.16850 7.28012 7.38974 7.89026 8.10740 8.18112 8.40146 8.84134 9.62902 11.00869 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.025359 B = 0.008724 C = 0.006772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.887281 B = 3208.750472 C = 4133.600407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.016 3.984 3 N -0.483 5.483 4 C 0.009 3.991 5 C 0.068 3.932 6 N -0.673 5.673 7 C 0.094 3.906 8 H 0.032 0.968 9 C -0.137 4.137 10 C 0.006 3.994 11 C -0.604 4.604 12 H 0.045 0.955 13 C 0.018 3.982 14 N -0.910 5.910 15 Si 1.065 2.935 16 H -0.282 1.282 17 H -0.289 1.289 18 H -0.288 1.288 19 C -0.026 4.026 20 H 0.053 0.947 21 H 0.059 0.941 22 H 0.054 0.946 23 H 0.068 0.932 24 H 0.043 0.957 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.097 0.903 28 H 0.357 0.643 29 H 0.039 0.961 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.012 0.988 33 H 0.016 0.984 34 H 0.270 0.730 35 H 0.073 0.927 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.491 -2.608 -11.256 13.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.113 4.113 3 N -0.207 5.207 4 C -0.121 4.121 5 C -0.044 4.044 6 N -0.306 5.306 7 C -0.015 4.015 8 H 0.050 0.950 9 C -0.195 4.195 10 C -0.031 4.031 11 C -0.642 4.642 12 H 0.064 0.936 13 C -0.187 4.187 14 N -0.545 5.545 15 Si 0.894 3.106 16 H -0.207 1.207 17 H -0.215 1.215 18 H -0.215 1.215 19 C -0.157 4.157 20 H 0.072 0.928 21 H 0.078 0.922 22 H 0.073 0.927 23 H 0.087 0.913 24 H 0.061 0.939 25 H 0.102 0.898 26 H 0.090 0.910 27 H 0.115 0.885 28 H 0.179 0.821 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.030 0.970 33 H 0.035 0.965 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.598 -2.864 -10.647 13.390 hybrid contribution -0.204 0.156 -0.396 0.472 sum -7.801 -2.708 -11.043 13.790 Atomic orbital electron populations 1.21654 0.94950 1.01000 1.02302 1.22596 0.96714 0.91026 1.00965 1.68460 1.14866 1.18664 1.18671 1.24086 0.88496 0.99434 1.00038 1.23385 0.88358 0.98682 0.93990 1.60504 1.37535 1.09441 1.23115 1.21471 0.96743 0.88936 0.94351 0.94952 1.21830 1.00069 0.99005 0.98576 1.19411 0.96454 0.96518 0.90745 1.21978 0.99301 1.42333 1.00633 0.93635 1.25780 0.98957 0.96535 0.97383 1.70771 1.05293 1.38957 1.39521 0.83594 0.74753 0.76038 0.76251 1.20720 1.21536 1.21492 1.24832 0.99617 1.00160 0.91066 0.92806 0.92221 0.92731 0.91323 0.93866 0.89777 0.91026 0.88538 0.82084 0.94181 0.93350 0.92711 0.96978 0.96546 0.91959 0.90851 0.89921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 10.22 37.16 0.38 -1.18 16 2 C 0.02 0.20 5.52 -3.82 -0.02 0.18 16 3 N -0.48 -6.84 6.16 -238.20 -1.47 -8.31 16 4 C 0.01 0.13 7.75 -2.76 -0.02 0.11 16 5 C 0.07 1.09 4.04 -69.40 -0.28 0.81 16 6 N -0.67 -12.79 6.43 -100.96 -0.65 -13.44 16 7 C 0.09 1.95 2.45 -67.71 -0.17 1.78 16 8 H 0.03 0.69 7.85 -51.93 -0.41 0.28 16 9 C -0.14 -2.44 9.41 37.16 0.35 -2.09 16 10 C 0.01 0.15 3.88 -27.88 -0.11 0.04 16 11 C -0.60 -16.55 8.12 -34.44 -0.28 -16.83 16 12 H 0.05 1.22 7.49 -52.49 -0.39 0.82 16 13 C 0.02 0.51 5.46 -17.82 -0.10 0.41 16 14 N -0.91 -27.58 13.65 55.43 0.76 -26.82 16 15 Si 1.07 24.95 29.90 -169.99 -5.08 19.86 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 19 C -0.03 -0.41 7.61 -2.63 -0.02 -0.43 16 20 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 21 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 24 H 0.04 0.56 7.39 -51.93 -0.38 0.17 16 25 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.07 1.03 7.93 -51.93 -0.41 0.61 16 27 H 0.10 1.55 7.49 -51.93 -0.39 1.16 16 28 H 0.36 7.44 6.69 -39.30 -0.26 7.18 16 29 H 0.04 0.64 7.71 -51.93 -0.40 0.24 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.01 0.32 8.01 -51.93 -0.42 -0.10 16 33 H 0.02 0.44 8.00 -51.93 -0.42 0.02 16 34 H 0.27 8.18 7.22 -40.82 -0.29 7.88 16 35 H 0.07 1.19 7.17 -51.93 -0.37 0.82 16 36 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 289.94 15.07 4.37 4.37 Total: -1.00 -28.75 289.94 -8.66 -37.41 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -6.32 Total: 4.12 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -0.26 Total: -17.19 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: -1.36 Total: -48.57 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.08 Total: 19.86 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.75 -8.66 -37.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709974536.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.553 kcal (2) G-P(sol) polarization free energy of solvation -28.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds