Wall clock time and date at job start Mon Mar 30 2020 03:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.50703 * 109.47148 * 184.99915 * 4 2 1 6 6 H 1.08004 * 119.99894 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00136 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99679 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00188 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47086 * 89.99749 * 9 7 5 11 11 H 1.48500 * 109.47223 * 209.99861 * 9 7 5 12 12 H 1.48499 * 109.46912 * 330.00223 * 9 7 5 13 13 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 14 14 N 1.45403 * 110.99530 * 90.00273 * 13 2 1 15 15 C 1.46849 * 111.00090 * 244.20749 * 14 13 2 16 16 C 1.53033 * 109.52540 * 174.15956 * 15 14 13 17 17 C 1.53119 * 109.27679 * 59.18164 * 16 15 14 18 18 C 1.53114 * 109.16167 * 302.34543 * 17 16 15 19 19 C 1.46851 * 110.99850 * 120.00367 * 14 13 2 20 20 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 21 21 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 22 22 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 24 24 H 1.09000 * 109.47314 * 64.99572 * 4 2 1 25 25 H 0.97002 * 119.99753 * 180.02562 * 8 7 5 26 26 H 1.00894 * 111.00423 * 326.05011 * 13 2 1 27 27 H 1.09001 * 109.46520 * 294.18300 * 15 14 13 28 28 H 1.09004 * 109.45617 * 54.14822 * 15 14 13 29 29 H 1.08997 * 109.50280 * 299.24215 * 16 15 14 30 30 H 1.09001 * 109.50131 * 179.12216 * 16 15 14 31 31 H 1.09002 * 109.52466 * 182.43775 * 17 16 15 32 32 H 1.09011 * 109.52048 * 62.24912 * 17 16 15 33 33 H 1.08995 * 109.50534 * 297.71477 * 18 17 16 34 34 H 1.09007 * 109.50430 * 177.59478 * 18 17 16 35 35 H 1.09000 * 109.46065 * 305.84743 * 19 14 13 36 36 H 1.08996 * 109.46656 * 65.82218 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3127 6 1 4.0790 -0.0855 0.5396 7 6 4.2304 -1.1927 2.3583 8 7 3.5763 -1.8361 3.3005 9 14 6.0921 -1.0616 2.4366 10 1 6.4709 0.1613 3.1892 11 1 6.6441 -2.2566 3.1239 12 1 6.6412 -0.9849 1.0590 13 7 2.0196 -0.6926 -1.1994 14 7 2.1934 0.2374 -2.3036 15 6 1.2781 -0.0794 -3.4074 16 6 1.3849 1.0006 -4.4863 17 6 2.8271 1.0643 -4.9968 18 6 3.7647 1.3474 -3.8199 19 6 3.5889 0.2573 -2.7602 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.6055 -0.2618 2.1370 24 1 1.7516 -1.7716 1.2057 25 1 4.0606 -2.2423 4.0363 26 1 1.4035 -1.4489 -1.4571 27 1 1.5444 -1.0465 -3.8339 28 1 0.2556 -0.1175 -3.0316 29 1 1.1054 1.9658 -4.0640 30 1 0.7169 0.7569 -5.3125 31 1 2.9175 1.8616 -5.7345 32 1 3.0940 0.1115 -5.4541 33 1 3.5227 2.3180 -3.3871 34 1 4.7971 1.3516 -4.1698 35 1 4.2448 0.4638 -1.9145 36 1 3.8444 -0.7113 -3.1897 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710010076.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:24 Heat of formation + Delta-G solvation = 9.569246 kcal Electronic energy + Delta-G solvation = -14733.527742 eV Core-core repulsion = 12445.629770 eV Total energy + Delta-G solvation = -2287.897972 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.48172 -35.64282 -32.79264 -31.53080 -30.62590 -27.51486 -27.06191 -23.18465 -22.87906 -22.45533 -19.69403 -19.28319 -16.55286 -15.95573 -14.71734 -14.50163 -14.45832 -14.12976 -13.67254 -13.23826 -12.97327 -12.59122 -12.39180 -11.95893 -11.72183 -11.44335 -11.13158 -11.05874 -10.70663 -10.66424 -10.49068 -10.30389 -10.11397 -9.93271 -9.31244 -8.93868 -8.55050 -8.21125 -7.36388 -5.83399 -3.80576 3.41878 3.47716 3.52430 3.82389 4.60566 4.85097 4.96345 5.03515 5.36907 5.44132 5.54027 5.54466 5.66983 5.78043 5.87247 5.89737 5.98532 6.02168 6.04973 6.10700 6.22519 6.25965 6.49263 6.53883 6.62125 6.82698 7.12373 7.33131 7.61793 7.80369 8.04431 8.16274 8.37946 8.65609 9.24773 9.80368 11.28841 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.033234 B = 0.008548 C = 0.007045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.320875 B = 3274.643672 C = 3973.390446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.100 3.900 3 H 0.075 0.925 4 C 0.034 3.966 5 C -0.486 4.486 6 H 0.058 0.942 7 C 0.049 3.951 8 N -0.905 5.905 9 Si 0.889 3.111 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.501 5.501 14 N -0.382 5.382 15 C 0.030 3.970 16 C -0.112 4.112 17 C -0.121 4.121 18 C -0.117 4.117 19 C 0.070 3.930 20 H 0.039 0.961 21 H 0.055 0.945 22 H 0.046 0.954 23 H 0.021 0.979 24 H 0.015 0.985 25 H 0.256 0.744 26 H 0.319 0.681 27 H 0.032 0.968 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.815 4.700 -14.274 15.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.010 4.010 3 H 0.093 0.907 4 C -0.004 4.004 5 C -0.525 4.525 6 H 0.077 0.923 7 C -0.150 4.150 8 N -0.546 5.546 9 Si 0.717 3.283 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.221 5.221 14 N -0.197 5.197 15 C -0.099 4.099 16 C -0.151 4.151 17 C -0.158 4.158 18 C -0.156 4.156 19 C -0.058 4.058 20 H 0.058 0.942 21 H 0.074 0.926 22 H 0.065 0.935 23 H 0.039 0.961 24 H 0.033 0.967 25 H 0.066 0.934 26 H 0.136 0.864 27 H 0.051 0.949 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -3.226 5.093 -13.742 15.007 hybrid contribution 0.185 -0.776 -0.428 0.905 sum -3.041 4.317 -14.170 15.122 Atomic orbital electron populations 1.22565 0.99609 1.00702 1.00739 1.21871 0.89754 0.99109 0.90251 0.90701 1.19125 0.96303 0.95348 0.89662 1.21164 0.91922 1.32601 1.06770 0.92344 1.25007 0.97936 0.95981 0.96090 1.69966 1.35137 1.37174 1.12349 0.86647 0.86532 0.77176 0.77916 1.21024 1.21600 1.20000 1.64111 1.53248 1.06077 0.98699 1.65196 1.05065 1.44389 1.05074 1.22542 0.97380 0.97116 0.92900 1.21538 0.96715 0.99648 0.97152 1.21586 0.95303 1.01215 0.97735 1.21635 0.98822 0.99852 0.95279 1.21966 0.89708 0.96560 0.97566 0.94213 0.92569 0.93503 0.96089 0.96660 0.93392 0.86426 0.94947 0.91357 0.91229 0.92015 0.92185 0.92459 0.91263 0.91644 0.89698 0.95201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.12 9.21 37.16 0.34 -2.78 16 2 C 0.10 2.11 2.82 -67.71 -0.19 1.91 16 3 H 0.07 1.68 8.01 -51.93 -0.42 1.26 16 4 C 0.03 0.88 4.65 -27.88 -0.13 0.75 16 5 C -0.49 -13.91 8.84 -34.44 -0.30 -14.21 16 6 H 0.06 1.67 7.74 -52.48 -0.41 1.26 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 8 N -0.91 -27.78 13.29 55.43 0.74 -27.04 16 9 Si 0.89 22.39 29.54 -169.99 -5.02 17.37 16 10 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 13 N -0.50 -9.89 6.23 -4.67 -0.03 -9.92 16 14 N -0.38 -6.51 4.69 -113.81 -0.53 -7.04 16 15 C 0.03 0.42 5.41 -3.83 -0.02 0.40 16 16 C -0.11 -1.29 6.09 -26.65 -0.16 -1.45 16 17 C -0.12 -1.34 6.00 -26.61 -0.16 -1.50 16 18 C -0.12 -1.51 6.09 -26.65 -0.16 -1.67 16 19 C 0.07 1.16 5.90 -3.83 -0.02 1.13 16 20 H 0.04 0.63 7.83 -51.93 -0.41 0.23 16 21 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 22 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 23 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.32 5.86 7.80 -174.66 -1.36 4.50 16 27 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.93 7.83 -51.93 -0.41 0.52 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 36 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 288.90 15.07 4.35 4.35 Total: -1.00 -30.23 288.90 -9.03 -39.26 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -7.63 Total: -0.90 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: -0.91 Total: -16.08 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.17 Total: -44.00 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.23 -9.03 -39.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710010076.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.828 kcal (2) G-P(sol) polarization free energy of solvation -30.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds