Wall clock time and date at job start Mon Mar 30 2020 03:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.50703 * 109.47148 * 184.99915 * 4 2 1 6 6 H 1.08004 * 119.99894 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00136 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99679 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00188 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47086 * 89.99749 * 9 7 5 11 11 H 1.48500 * 109.47223 * 209.99861 * 9 7 5 12 12 H 1.48499 * 109.46912 * 330.00223 * 9 7 5 13 13 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 14 14 N 1.45403 * 110.99530 * 90.00273 * 13 2 1 15 15 C 1.46849 * 111.00090 * 244.20749 * 14 13 2 16 16 C 1.53033 * 109.52540 * 174.15956 * 15 14 13 17 17 C 1.53119 * 109.27679 * 59.18164 * 16 15 14 18 18 C 1.53114 * 109.16167 * 302.34543 * 17 16 15 19 19 C 1.46851 * 110.99850 * 120.00367 * 14 13 2 20 20 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 21 21 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 22 22 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 24 24 H 1.09000 * 109.47314 * 64.99572 * 4 2 1 25 25 H 0.97002 * 119.99753 * 180.02562 * 8 7 5 26 26 H 1.00894 * 111.00423 * 326.05011 * 13 2 1 27 27 H 1.09001 * 109.46520 * 294.18300 * 15 14 13 28 28 H 1.09004 * 109.45617 * 54.14822 * 15 14 13 29 29 H 1.08997 * 109.50280 * 299.24215 * 16 15 14 30 30 H 1.09001 * 109.50131 * 179.12216 * 16 15 14 31 31 H 1.09002 * 109.52466 * 182.43775 * 17 16 15 32 32 H 1.09011 * 109.52048 * 62.24912 * 17 16 15 33 33 H 1.08995 * 109.50534 * 297.71477 * 18 17 16 34 34 H 1.09007 * 109.50430 * 177.59478 * 18 17 16 35 35 H 1.09000 * 109.46065 * 305.84743 * 19 14 13 36 36 H 1.08996 * 109.46656 * 65.82218 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6150 1.3127 6 1 4.0790 -0.0855 0.5396 7 6 4.2304 -1.1927 2.3583 8 7 3.5763 -1.8361 3.3005 9 14 6.0921 -1.0616 2.4366 10 1 6.4709 0.1613 3.1892 11 1 6.6441 -2.2566 3.1239 12 1 6.6412 -0.9849 1.0590 13 7 2.0196 -0.6926 -1.1994 14 7 2.1934 0.2374 -2.3036 15 6 1.2781 -0.0794 -3.4074 16 6 1.3849 1.0006 -4.4863 17 6 2.8271 1.0643 -4.9968 18 6 3.7647 1.3474 -3.8199 19 6 3.5889 0.2573 -2.7602 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.6055 -0.2618 2.1370 24 1 1.7516 -1.7716 1.2057 25 1 4.0606 -2.2423 4.0363 26 1 1.4035 -1.4489 -1.4571 27 1 1.5444 -1.0465 -3.8339 28 1 0.2556 -0.1175 -3.0316 29 1 1.1054 1.9658 -4.0640 30 1 0.7169 0.7569 -5.3125 31 1 2.9175 1.8616 -5.7345 32 1 3.0940 0.1115 -5.4541 33 1 3.5227 2.3180 -3.3871 34 1 4.7971 1.3516 -4.1698 35 1 4.2448 0.4638 -1.9145 36 1 3.8444 -0.7113 -3.1897 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710010076.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:24 Heat of formation + Delta-G solvation = -9.373899 kcal Electronic energy + Delta-G solvation = -14734.349178 eV Core-core repulsion = 12445.629770 eV Total energy + Delta-G solvation = -2288.719408 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.71081 -37.21797 -34.74477 -33.09960 -31.72513 -29.40926 -28.57332 -25.08696 -24.01643 -23.78331 -21.30566 -20.50709 -18.45154 -17.64289 -16.52434 -15.97055 -15.80704 -15.39277 -14.90419 -14.52685 -14.30155 -14.21177 -13.93908 -13.49863 -13.23841 -13.10943 -12.95332 -12.56364 -12.39272 -12.11951 -11.90849 -11.63104 -11.48100 -11.32592 -11.12116 -11.04983 -10.48489 -10.01558 -8.82032 -8.09482 -6.14119 1.40591 1.41755 1.53046 2.45135 2.47401 3.24385 3.76931 3.98100 4.07823 4.19360 4.32412 4.36612 4.45039 4.48902 4.59298 4.64510 4.71466 4.90158 5.00163 5.03514 5.05510 5.19308 5.20187 5.22988 5.28389 5.34872 5.46651 5.50672 5.74707 5.90231 6.09267 6.29148 6.49843 6.92974 6.99132 7.51180 9.02735 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.033234 B = 0.008548 C = 0.007045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.320875 B = 3274.643672 C = 3973.390446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.114 3.886 3 H 0.059 0.941 4 C 0.039 3.961 5 C -0.498 4.498 6 H 0.053 0.947 7 C -0.006 4.006 8 N -0.940 5.940 9 Si 0.956 3.044 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.269 1.269 13 N -0.523 5.523 14 N -0.387 5.387 15 C 0.029 3.971 16 C -0.107 4.107 17 C -0.117 4.117 18 C -0.110 4.110 19 C 0.069 3.931 20 H 0.061 0.939 21 H 0.056 0.944 22 H 0.051 0.949 23 H -0.003 1.003 24 H -0.009 1.009 25 H 0.259 0.741 26 H 0.325 0.675 27 H 0.033 0.967 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.050 0.950 36 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.707 5.469 -16.347 17.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.004 3.996 3 H 0.077 0.923 4 C 0.001 3.999 5 C -0.536 4.536 6 H 0.072 0.928 7 C -0.202 4.202 8 N -0.583 5.583 9 Si 0.782 3.218 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.193 1.193 13 N -0.243 5.243 14 N -0.202 5.202 15 C -0.100 4.100 16 C -0.146 4.146 17 C -0.154 4.154 18 C -0.149 4.149 19 C -0.059 4.059 20 H 0.080 0.920 21 H 0.075 0.925 22 H 0.071 0.929 23 H 0.016 0.984 24 H 0.009 0.991 25 H 0.068 0.932 26 H 0.143 0.857 27 H 0.052 0.948 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.068 0.932 36 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -3.126 5.868 -15.831 17.170 hybrid contribution 0.141 -1.025 0.186 1.051 sum -2.985 4.843 -15.645 16.647 Atomic orbital electron populations 1.22399 0.96648 1.01445 1.01865 1.21426 0.91979 0.97155 0.89054 0.92301 1.18990 0.95228 0.94175 0.91504 1.21464 0.93382 1.32242 1.06549 0.92850 1.25859 1.02942 0.95661 0.95751 1.70092 1.37081 1.38102 1.13006 0.85576 0.80577 0.77467 0.78168 1.20040 1.21084 1.19341 1.63851 1.53683 1.07047 0.99763 1.65175 1.05938 1.43494 1.05611 1.22658 0.96653 0.98240 0.92476 1.21549 0.97632 0.98443 0.96945 1.21584 0.94322 1.02327 0.97198 1.21606 1.00458 0.97994 0.94860 1.21988 0.88926 0.97712 0.97301 0.91984 0.92458 0.92944 0.98445 0.99064 0.93245 0.85739 0.94837 0.90894 0.91502 0.89424 0.89789 0.92071 0.91657 0.90162 0.93172 0.95770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.66 9.21 71.98 0.66 -5.00 16 2 C 0.11 4.86 2.82 44.92 0.13 4.99 16 3 H 0.06 2.68 8.01 -2.39 -0.02 2.66 16 4 C 0.04 2.12 4.65 29.85 0.14 2.26 16 5 C -0.50 -29.21 8.84 25.60 0.23 -28.99 16 6 H 0.05 3.12 7.74 -2.91 -0.02 3.10 16 7 C -0.01 -0.38 5.46 84.65 0.46 0.08 16 8 N -0.94 -58.88 13.29 21.45 0.28 -58.59 16 9 Si 0.96 46.47 29.54 68.60 2.03 48.50 16 10 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 12 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 13 N -0.52 -20.71 6.23 -168.67 -1.05 -21.76 16 14 N -0.39 -12.88 4.69 -513.99 -2.41 -15.29 16 15 C 0.03 0.73 5.41 86.32 0.47 1.20 16 16 C -0.11 -2.11 6.09 30.65 0.19 -1.92 16 17 C -0.12 -2.20 6.00 30.67 0.18 -2.02 16 18 C -0.11 -2.63 6.09 30.65 0.19 -2.44 16 19 C 0.07 2.25 5.90 86.33 0.51 2.76 16 20 H 0.06 1.86 7.83 -2.39 -0.02 1.84 16 21 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 22 H 0.05 1.73 8.12 -2.38 -0.02 1.71 16 23 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 24 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 25 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 26 H 0.32 11.88 7.80 -204.85 -1.60 10.28 16 27 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.07 1.80 7.83 -2.39 -0.02 1.78 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.37 16 30 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 35 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -65.73 288.90 1.42 -64.31 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -0.58 Total: 11.91 kcal Atomic # 6 Polarization: -32.23 SS G_CDS: 3.15 Total: -29.08 kcal Atomic # 7 Polarization: -92.46 SS G_CDS: -3.18 Total: -95.64 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -65.73 1.42 -64.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710010076.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.935 kcal (2) G-P(sol) polarization free energy of solvation -65.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds