Wall clock time and date at job start Mon Mar 30 2020 03:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46906 * 109.46951 * 2 1 4 4 C 1.47481 * 111.00395 * 265.97131 * 3 2 1 5 5 C 1.53631 * 87.95202 * 221.34999 * 4 3 2 6 6 C 1.47483 * 111.00139 * 169.99889 * 3 2 1 7 7 H 1.09006 * 113.46904 * 23.87480 * 6 3 2 8 8 C 1.52993 * 113.47807 * 253.47448 * 6 3 2 9 9 N 1.46906 * 109.47378 * 56.09907 * 8 6 3 10 10 C 1.46898 * 110.99888 * 180.02562 * 9 8 6 11 11 C 1.53006 * 109.47138 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.47125 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00013 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99819 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99659 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00042 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46788 * 90.00222 * 16 14 12 18 18 H 1.48493 * 109.47020 * 210.00172 * 16 14 12 19 19 H 1.48493 * 109.46999 * 330.00487 * 16 14 12 20 20 H 1.09006 * 109.47336 * 59.99818 * 1 2 3 21 21 H 1.08995 * 109.46942 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47135 * 300.00205 * 1 2 3 23 23 H 1.09000 * 109.47297 * 240.00263 * 2 1 3 24 24 H 1.08993 * 109.47368 * 119.99813 * 2 1 3 25 25 H 1.09003 * 113.47150 * 336.06486 * 4 3 2 26 26 H 1.08994 * 113.47457 * 106.52535 * 4 3 2 27 27 H 1.08994 * 114.16682 * 272.34318 * 5 4 3 28 28 H 1.09000 * 114.20078 * 139.60613 * 5 4 3 29 29 H 1.09004 * 109.46862 * 296.10010 * 8 6 3 30 30 H 1.09000 * 109.47250 * 176.10033 * 8 6 3 31 31 H 1.00904 * 110.99860 * 56.05050 * 9 8 6 32 32 H 1.08997 * 109.47334 * 299.99788 * 10 9 8 33 33 H 1.08995 * 109.47296 * 60.00089 * 10 9 8 34 34 H 1.08997 * 109.46770 * 300.00054 * 11 10 9 35 35 H 1.09004 * 109.46866 * 60.00123 * 11 10 9 36 36 H 0.97007 * 119.99919 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 2.2870 1.8512 -1.3734 5 6 3.5623 2.5207 -0.8389 6 6 3.4742 1.4315 0.2391 7 1 3.9884 0.5093 -0.0321 8 6 3.8465 1.9268 1.6380 9 7 3.1869 1.0867 2.6466 10 6 3.5217 1.5343 4.0051 11 6 2.8185 0.6370 5.0256 12 6 3.1625 1.0958 6.4192 13 1 3.8168 1.9430 6.5627 14 6 2.6409 0.4348 7.5110 15 7 1.8437 -0.5965 7.3361 16 14 3.0679 1.0030 9.2385 17 1 2.0747 2.0116 9.6873 18 1 3.0446 -0.1597 10.1619 19 1 4.4236 1.6088 9.2394 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 2.4846 1.0415 -2.0760 26 1 1.5461 2.5598 -1.7434 27 1 3.4113 3.5330 -0.4640 28 1 4.4256 2.4277 -1.4979 29 1 3.5203 2.9602 1.7562 30 1 4.9272 1.8697 1.7680 31 1 3.4228 0.1142 2.5175 32 1 4.6001 1.4748 4.1518 33 1 3.1930 2.5648 4.1394 34 1 1.7400 0.6961 4.8790 35 1 3.1476 -0.3934 4.8911 36 1 1.4770 -1.0618 8.1042 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712555800.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:10 Heat of formation + Delta-G solvation = 22.721902 kcal Electronic energy + Delta-G solvation = -14147.409353 eV Core-core repulsion = 11860.081723 eV Total energy + Delta-G solvation = -2287.327630 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.14628 -35.60866 -32.98855 -32.52831 -29.90638 -27.21451 -26.82571 -23.91255 -22.24866 -21.65193 -20.56694 -19.52529 -16.26994 -16.17686 -15.50896 -15.18048 -14.41019 -14.28130 -13.77381 -13.41457 -12.94517 -12.68998 -12.28550 -12.17294 -11.97002 -11.56076 -11.20244 -10.94655 -10.88441 -10.83401 -10.60258 -10.52484 -10.32210 -9.89063 -9.30461 -9.09983 -8.68474 -8.30894 -7.66089 -5.95698 -3.97951 3.34950 3.40692 3.44014 4.01351 4.41735 4.49165 4.69188 4.98237 5.15534 5.25866 5.30972 5.40174 5.47442 5.49419 5.59868 5.69923 5.73583 5.83980 5.92502 6.03509 6.16217 6.20568 6.41913 6.44019 6.47852 6.62017 7.05582 7.25130 7.57442 7.78792 7.90199 8.04411 8.15307 8.49067 9.09511 9.65511 11.15797 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.047378 B = 0.005591 C = 0.005125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.848007 B = 5006.626422 C = 5461.863760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.020 3.980 3 N -0.444 5.444 4 C -0.009 4.009 5 C -0.141 4.141 6 C 0.030 3.970 7 H 0.070 0.930 8 C 0.077 3.923 9 N -0.680 5.680 10 C 0.067 3.933 11 C 0.026 3.974 12 C -0.520 4.520 13 H 0.054 0.946 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.892 3.108 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.275 1.275 20 H 0.045 0.955 21 H 0.052 0.948 22 H 0.067 0.933 23 H 0.032 0.968 24 H 0.081 0.919 25 H 0.062 0.938 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.023 0.977 31 H 0.329 0.671 32 H 0.012 0.988 33 H 0.058 0.942 34 H 0.025 0.975 35 H 0.012 0.988 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.339 2.759 -16.862 17.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 N -0.166 5.166 4 C -0.138 4.138 5 C -0.179 4.179 6 C -0.080 4.080 7 H 0.088 0.912 8 C -0.053 4.053 9 N -0.310 5.310 10 C -0.061 4.061 11 C -0.011 4.011 12 C -0.559 4.559 13 H 0.072 0.928 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.720 3.280 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.200 1.200 20 H 0.065 0.935 21 H 0.072 0.928 22 H 0.086 0.914 23 H 0.051 0.949 24 H 0.100 0.900 25 H 0.080 0.920 26 H 0.099 0.901 27 H 0.112 0.888 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.041 0.959 31 H 0.145 0.855 32 H 0.030 0.970 33 H 0.076 0.924 34 H 0.044 0.956 35 H 0.030 0.970 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.152 3.307 -16.325 16.697 hybrid contribution 1.602 -0.698 0.567 1.838 sum 2.754 2.608 -15.759 16.209 Atomic orbital electron populations 1.21613 0.94790 1.00988 1.02285 1.22607 0.97054 0.90404 1.00814 1.68933 1.13453 1.19840 1.14397 1.23868 0.97591 0.99638 0.92708 1.23215 0.97637 0.99358 0.97697 1.23406 0.90810 0.97868 0.95948 0.91223 1.21857 0.94957 0.98599 0.89933 1.60522 1.61535 1.05699 1.03222 1.22144 0.96760 1.00357 0.86849 1.19054 0.96501 0.93941 0.91624 1.21196 1.28993 1.14551 0.91194 0.92812 1.25002 0.95153 0.95027 0.99190 1.69981 1.32485 1.20473 1.30388 0.86591 0.78774 0.78185 0.84422 1.20627 1.21254 1.19954 0.93539 0.92848 0.91389 0.94938 0.90040 0.91986 0.90082 0.88808 0.91060 0.90888 0.95909 0.85474 0.97021 0.92395 0.95617 0.97013 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 10.24 37.16 0.38 -1.38 16 2 C 0.02 0.26 5.54 -3.82 -0.02 0.24 16 3 N -0.44 -6.07 6.00 -236.30 -1.42 -7.49 16 4 C -0.01 -0.10 7.71 -7.48 -0.06 -0.15 16 5 C -0.14 -1.45 8.01 -26.14 -0.21 -1.66 16 6 C 0.03 0.38 3.27 -71.44 -0.23 0.14 16 7 H 0.07 0.84 7.91 -51.93 -0.41 0.43 16 8 C 0.08 1.17 5.81 -3.82 -0.02 1.14 16 9 N -0.68 -12.65 6.21 -113.78 -0.71 -13.35 16 10 C 0.07 1.47 5.62 -3.82 -0.02 1.45 16 11 C 0.03 0.71 5.23 -27.88 -0.15 0.56 16 12 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 13 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -27.44 13.29 55.43 0.74 -26.71 16 16 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 20 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 21 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.03 0.37 7.30 -51.93 -0.38 -0.01 16 24 H 0.08 1.19 7.61 -51.93 -0.40 0.80 16 25 H 0.06 0.59 7.42 -51.93 -0.39 0.21 16 26 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.09 0.98 7.95 -51.93 -0.41 0.57 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.07 1.15 7.90 -51.93 -0.41 0.74 16 30 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.33 5.91 8.44 -39.29 -0.33 5.58 16 32 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 294.36 15.07 4.44 4.44 Total: -1.00 -30.76 294.36 -9.21 -39.97 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -6.49 Total: -0.34 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -0.74 Total: -13.53 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: -1.39 Total: -47.55 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.76 -9.21 -39.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712555800.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.688 kcal (2) G-P(sol) polarization free energy of solvation -30.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds