Wall clock time and date at job start Mon Mar 30 2020 03:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46906 * 109.46951 * 2 1 4 4 C 1.47481 * 111.00395 * 265.97131 * 3 2 1 5 5 C 1.53631 * 87.95202 * 221.34999 * 4 3 2 6 6 C 1.47483 * 111.00139 * 169.99889 * 3 2 1 7 7 H 1.09006 * 113.46904 * 23.87480 * 6 3 2 8 8 C 1.52993 * 113.47807 * 253.47448 * 6 3 2 9 9 N 1.46906 * 109.47378 * 56.09907 * 8 6 3 10 10 C 1.46898 * 110.99888 * 180.02562 * 9 8 6 11 11 C 1.53006 * 109.47138 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.47125 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00013 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99819 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99659 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00042 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46788 * 90.00222 * 16 14 12 18 18 H 1.48493 * 109.47020 * 210.00172 * 16 14 12 19 19 H 1.48493 * 109.46999 * 330.00487 * 16 14 12 20 20 H 1.09006 * 109.47336 * 59.99818 * 1 2 3 21 21 H 1.08995 * 109.46942 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47135 * 300.00205 * 1 2 3 23 23 H 1.09000 * 109.47297 * 240.00263 * 2 1 3 24 24 H 1.08993 * 109.47368 * 119.99813 * 2 1 3 25 25 H 1.09003 * 113.47150 * 336.06486 * 4 3 2 26 26 H 1.08994 * 113.47457 * 106.52535 * 4 3 2 27 27 H 1.08994 * 114.16682 * 272.34318 * 5 4 3 28 28 H 1.09000 * 114.20078 * 139.60613 * 5 4 3 29 29 H 1.09004 * 109.46862 * 296.10010 * 8 6 3 30 30 H 1.09000 * 109.47250 * 176.10033 * 8 6 3 31 31 H 1.00904 * 110.99860 * 56.05050 * 9 8 6 32 32 H 1.08997 * 109.47334 * 299.99788 * 10 9 8 33 33 H 1.08995 * 109.47296 * 60.00089 * 10 9 8 34 34 H 1.08997 * 109.46770 * 300.00054 * 11 10 9 35 35 H 1.09004 * 109.46866 * 60.00123 * 11 10 9 36 36 H 0.97007 * 119.99919 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 2.2870 1.8512 -1.3734 5 6 3.5623 2.5207 -0.8389 6 6 3.4742 1.4315 0.2391 7 1 3.9884 0.5093 -0.0321 8 6 3.8465 1.9268 1.6380 9 7 3.1869 1.0867 2.6466 10 6 3.5217 1.5343 4.0051 11 6 2.8185 0.6370 5.0256 12 6 3.1625 1.0958 6.4192 13 1 3.8168 1.9430 6.5627 14 6 2.6409 0.4348 7.5110 15 7 1.8437 -0.5965 7.3361 16 14 3.0679 1.0030 9.2385 17 1 2.0747 2.0116 9.6873 18 1 3.0446 -0.1597 10.1619 19 1 4.4236 1.6088 9.2394 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 2.4846 1.0415 -2.0760 26 1 1.5461 2.5598 -1.7434 27 1 3.4113 3.5330 -0.4640 28 1 4.4256 2.4277 -1.4979 29 1 3.5203 2.9602 1.7562 30 1 4.9272 1.8697 1.7680 31 1 3.4228 0.1142 2.5175 32 1 4.6001 1.4748 4.1518 33 1 3.1930 2.5648 4.1394 34 1 1.7400 0.6961 4.8790 35 1 3.1476 -0.3934 4.8911 36 1 1.4770 -1.0618 8.1042 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712555800.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:09 Heat of formation + Delta-G solvation = 0.162140 kcal Electronic energy + Delta-G solvation = -14148.387617 eV Core-core repulsion = 11860.081723 eV Total energy + Delta-G solvation = -2288.305895 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.10689 -37.25398 -34.99595 -33.65002 -31.73000 -28.48500 -28.04302 -25.75559 -23.39373 -22.71693 -22.46570 -20.52491 -18.51179 -17.21523 -16.80801 -16.37982 -16.33530 -15.63306 -15.15460 -14.59411 -14.41668 -14.16595 -13.93304 -13.33232 -13.20118 -13.02158 -12.84260 -12.53025 -12.47420 -12.11393 -12.00280 -11.83538 -11.53794 -11.47318 -11.35999 -11.02216 -10.56901 -9.65096 -9.17726 -8.20609 -6.32532 1.39894 1.42120 1.53013 2.40448 3.02629 3.12613 3.41361 3.64091 3.93813 4.14434 4.30165 4.32949 4.37557 4.50668 4.54908 4.60839 4.65800 4.73756 4.82732 4.92017 4.95299 5.01400 5.07028 5.15794 5.26074 5.40577 5.43568 5.60511 5.67273 5.78648 6.15041 6.30090 6.32090 6.58081 6.84795 7.36832 8.91692 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.047378 B = 0.005591 C = 0.005125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.848007 B = 5006.626422 C = 5461.863760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.021 3.979 3 N -0.476 5.476 4 C -0.004 4.004 5 C -0.127 4.127 6 C 0.028 3.972 7 H 0.080 0.920 8 C 0.077 3.923 9 N -0.686 5.686 10 C 0.086 3.914 11 C 0.034 3.966 12 C -0.546 4.546 13 H 0.060 0.940 14 C 0.000 4.000 15 N -0.932 5.932 16 Si 0.969 3.031 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.262 1.262 20 H 0.058 0.942 21 H 0.063 0.937 22 H 0.039 0.961 23 H 0.053 0.947 24 H 0.058 0.942 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.065 0.935 30 H 0.034 0.966 31 H 0.331 0.669 32 H 0.017 0.983 33 H 0.053 0.947 34 H -0.009 1.009 35 H -0.010 1.010 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.410 3.533 -17.653 18.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.108 4.108 3 N -0.199 5.199 4 C -0.133 4.133 5 C -0.165 4.165 6 C -0.082 4.082 7 H 0.098 0.902 8 C -0.052 4.052 9 N -0.317 5.317 10 C -0.043 4.043 11 C -0.003 4.003 12 C -0.584 4.584 13 H 0.078 0.922 14 C -0.198 4.198 15 N -0.572 5.572 16 Si 0.793 3.207 17 H -0.198 1.198 18 H -0.206 1.206 19 H -0.186 1.186 20 H 0.077 0.923 21 H 0.082 0.918 22 H 0.058 0.942 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.097 0.903 26 H 0.103 0.897 27 H 0.109 0.891 28 H 0.115 0.885 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.148 0.852 32 H 0.035 0.965 33 H 0.072 0.928 34 H 0.009 0.991 35 H 0.008 0.992 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.230 4.091 -17.142 17.764 hybrid contribution 1.236 -0.960 0.759 1.739 sum 3.466 3.131 -16.383 17.036 Atomic orbital electron populations 1.21574 0.94812 1.01458 1.01448 1.22575 0.97061 0.90526 1.00637 1.68920 1.14073 1.20071 1.16820 1.23907 0.97827 1.00078 0.91494 1.23174 0.98422 0.98243 0.96651 1.23445 0.90611 0.99325 0.94836 0.90212 1.21941 0.95309 0.97561 0.90404 1.60425 1.62530 1.06398 1.02316 1.21751 0.96187 0.98726 0.87634 1.18891 0.94680 0.93794 0.92939 1.21624 1.29398 1.14978 0.92438 0.92187 1.26001 0.94732 0.94917 1.04117 1.70119 1.33440 1.21693 1.31991 0.85391 0.79068 0.77914 0.78319 1.19760 1.20568 1.18640 0.92282 0.91786 0.94176 0.92895 0.92319 0.90342 0.89686 0.89109 0.88539 0.91634 0.94745 0.85167 0.96478 0.92836 0.99097 0.99197 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 10.24 71.98 0.74 -2.65 16 2 C 0.02 0.52 5.54 86.30 0.48 1.00 16 3 N -0.48 -12.43 6.00 -901.52 -5.41 -17.84 16 4 C 0.00 -0.08 7.71 83.62 0.64 0.56 16 5 C -0.13 -2.25 8.01 30.98 0.25 -2.00 16 6 C 0.03 0.66 3.27 42.18 0.14 0.79 16 7 H 0.08 1.73 7.91 -2.38 -0.02 1.71 16 8 C 0.08 2.27 5.81 86.30 0.50 2.77 16 9 N -0.69 -25.75 6.21 -513.88 -3.19 -28.95 16 10 C 0.09 3.82 5.62 86.31 0.49 4.30 16 11 C 0.03 1.92 5.23 29.85 0.16 2.07 16 12 C -0.55 -32.20 9.11 25.60 0.23 -31.96 16 13 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 14 C 0.00 0.01 5.46 84.65 0.46 0.47 16 15 N -0.93 -58.28 13.29 21.45 0.28 -58.00 16 16 Si 0.97 45.14 29.54 68.60 2.03 47.17 16 17 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 19 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 20 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 21 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.05 1.11 7.30 -2.39 -0.02 1.09 16 24 H 0.06 1.74 7.61 -2.39 -0.02 1.72 16 25 H 0.08 1.23 7.42 -2.39 -0.02 1.21 16 26 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.09 1.69 7.95 -2.39 -0.02 1.67 16 28 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.07 2.02 7.90 -2.38 -0.02 2.00 16 30 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.33 12.12 8.44 -89.69 -0.76 11.36 16 32 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 34 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 35 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 36 H 0.26 15.42 8.31 -92.70 -0.77 14.65 16 Total: -1.00 -66.57 294.36 -1.94 -68.51 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.27 Total: 13.74 kcal Atomic # 6 Polarization: -28.72 SS G_CDS: 4.08 Total: -24.63 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -8.32 Total: -104.79 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -66.57 -1.94 -68.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712555800.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.673 kcal (2) G-P(sol) polarization free energy of solvation -66.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds