Wall clock time and date at job start Mon Mar 30 2020 03:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46904 * 109.46797 * 2 1 4 4 C 1.47958 * 111.00195 * 70.63990 * 3 2 1 5 5 C 1.53940 * 86.17971 * 137.57848 * 4 3 2 6 6 C 1.47961 * 110.99513 * 170.00491 * 3 2 1 7 7 H 1.08990 * 113.86318 * 336.74013 * 6 3 2 8 8 C 1.53002 * 113.76087 * 108.10086 * 6 3 2 9 9 N 1.46897 * 109.47010 * 301.05995 * 8 6 3 10 10 C 1.46893 * 111.00104 * 180.02562 * 9 8 6 11 11 C 1.53004 * 109.47285 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47211 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99694 * 180.27574 * 12 11 10 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 11 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 11 17 17 H 1.48504 * 109.47266 * 60.00049 * 16 14 12 18 18 H 1.48504 * 109.46970 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47383 * 299.99456 * 16 14 12 20 20 H 1.08996 * 109.46864 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.46970 * 300.00160 * 1 2 3 22 22 H 1.09004 * 109.47271 * 59.99722 * 1 2 3 23 23 H 1.08991 * 109.47003 * 240.00430 * 2 1 3 24 24 H 1.08994 * 109.47366 * 119.99714 * 2 1 3 25 25 H 1.09000 * 113.75587 * 23.26588 * 4 3 2 26 26 H 1.08997 * 113.75952 * 251.89700 * 4 3 2 27 27 H 1.08997 * 113.73841 * 221.91741 * 5 4 3 28 28 H 1.09002 * 113.72942 * 90.63605 * 5 4 3 29 29 H 1.09000 * 109.46515 * 181.06244 * 8 6 3 30 30 H 1.09001 * 109.47055 * 61.06285 * 8 6 3 31 31 H 1.00908 * 111.00037 * 303.95605 * 9 8 6 32 32 H 1.09000 * 109.47823 * 59.99694 * 10 9 8 33 33 H 1.09007 * 109.47029 * 299.99462 * 10 9 8 34 34 H 1.09000 * 109.47211 * 59.98987 * 11 10 9 35 35 H 1.09007 * 109.46376 * 299.99529 * 11 10 9 36 36 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7646 2.0376 1.3032 5 6 3.1838 2.6197 1.1729 6 6 3.4789 1.4315 0.2398 7 1 3.8691 0.5543 0.7558 8 6 4.2954 1.8079 -0.9982 9 7 4.0391 0.8348 -2.0683 10 6 4.8085 1.1647 -3.2754 11 6 4.5155 0.1316 -4.3653 12 6 5.3044 0.4705 -5.6038 13 1 5.9498 1.3364 -5.6128 14 6 5.1974 -0.3213 -6.7273 15 7 4.4112 -1.3756 -6.7165 16 14 6.1692 0.1032 -8.2651 17 1 7.6210 0.0888 -7.9530 18 1 5.8812 -0.8968 -9.3245 19 1 5.7785 1.4548 -8.7403 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 1.8933 -0.5137 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.6516 1.3370 2.1305 26 1 0.9767 2.7900 1.2708 27 1 3.7531 2.5999 2.1022 28 1 3.2165 3.5882 0.6738 29 1 5.3565 1.8028 -0.7489 30 1 4.0061 2.8033 -1.3353 31 1 4.2386 -0.1046 -1.7583 32 1 5.8731 1.1550 -3.0417 33 1 4.5231 2.1557 -3.6285 34 1 3.4509 0.1418 -4.5988 35 1 4.8007 -0.8595 -4.0123 36 1 4.3357 -1.9324 -7.5071 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712555801.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:12 Heat of formation + Delta-G solvation = 19.526184 kcal Electronic energy + Delta-G solvation = -14102.726621 eV Core-core repulsion = 11815.260414 eV Total energy + Delta-G solvation = -2287.466207 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.96007 -35.62447 -33.01177 -32.47898 -29.89582 -27.12264 -26.92269 -23.97284 -22.37491 -21.55207 -20.55940 -19.43779 -16.26605 -16.19518 -15.54966 -15.09959 -14.41713 -14.24209 -13.88894 -13.51092 -13.05884 -12.66990 -12.26685 -12.11931 -11.84339 -11.57338 -11.22761 -10.99112 -10.92831 -10.88155 -10.64033 -10.49784 -10.39671 -9.89587 -9.30861 -9.11107 -8.58248 -8.30476 -7.66384 -5.95306 -3.97712 3.36403 3.40441 3.43044 3.92475 4.44152 4.51305 4.69820 5.00538 5.14150 5.25558 5.28876 5.40403 5.41893 5.47147 5.59130 5.67410 5.72786 5.82917 5.88383 6.03264 6.17708 6.19581 6.32103 6.41960 6.48017 6.63947 7.05705 7.24146 7.57441 7.78795 7.90359 8.04640 8.15542 8.49217 9.09550 9.65717 11.16173 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.048385 B = 0.005441 C = 0.005011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.548066 B = 5145.277580 C = 5586.247972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.019 3.981 3 N -0.452 5.452 4 C -0.005 4.005 5 C -0.141 4.141 6 C 0.034 3.966 7 H 0.071 0.929 8 C 0.079 3.921 9 N -0.680 5.680 10 C 0.067 3.933 11 C 0.026 3.974 12 C -0.521 4.521 13 H 0.053 0.947 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.277 1.277 20 H 0.055 0.945 21 H 0.046 0.954 22 H 0.064 0.936 23 H 0.088 0.912 24 H 0.029 0.971 25 H 0.062 0.938 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.091 0.909 29 H 0.024 0.976 30 H 0.073 0.927 31 H 0.329 0.671 32 H 0.012 0.988 33 H 0.058 0.942 34 H 0.025 0.975 35 H 0.012 0.988 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.810 4.688 16.416 17.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 N -0.175 5.175 4 C -0.134 4.134 5 C -0.179 4.179 6 C -0.076 4.076 7 H 0.089 0.911 8 C -0.051 4.051 9 N -0.310 5.310 10 C -0.061 4.061 11 C -0.011 4.011 12 C -0.560 4.560 13 H 0.071 0.929 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 H 0.074 0.926 21 H 0.065 0.935 22 H 0.083 0.917 23 H 0.107 0.893 24 H 0.047 0.953 25 H 0.080 0.920 26 H 0.103 0.897 27 H 0.086 0.914 28 H 0.109 0.891 29 H 0.042 0.958 30 H 0.091 0.909 31 H 0.146 0.854 32 H 0.030 0.970 33 H 0.076 0.924 34 H 0.044 0.956 35 H 0.030 0.970 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.732 5.114 15.462 16.959 hybrid contribution 1.694 -0.641 0.106 1.815 sum -3.038 4.473 15.568 16.480 Atomic orbital electron populations 1.21697 0.95158 1.01309 1.02061 1.22580 0.96171 0.90944 1.01246 1.68571 1.05794 1.15042 1.28136 1.23854 0.97935 0.99012 0.92609 1.23390 0.96263 0.99048 0.99190 1.23483 0.90915 0.97502 0.95679 0.91069 1.21806 0.95216 0.97734 0.90366 1.60523 1.60862 1.04639 1.05002 1.22147 0.92903 1.01079 0.90002 1.19051 0.97721 0.92926 0.91400 1.21159 1.26132 1.11186 0.97537 0.92857 1.24996 0.95506 0.95090 0.98744 1.69964 1.38081 1.15878 1.29419 0.86654 0.80400 0.78131 0.82762 1.20331 1.21284 1.20219 0.92587 0.93452 0.91674 0.89319 0.95313 0.91959 0.89745 0.91445 0.89063 0.95801 0.90867 0.85411 0.96996 0.92392 0.95620 0.97008 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.98 37.16 0.37 -1.32 16 2 C 0.02 0.25 5.54 -3.82 -0.02 0.23 16 3 N -0.45 -6.17 6.00 -230.69 -1.38 -7.55 16 4 C -0.01 -0.05 7.10 -2.76 -0.02 -0.07 16 5 C -0.14 -1.46 7.84 -25.79 -0.20 -1.66 16 6 C 0.03 0.43 3.51 -66.65 -0.23 0.20 16 7 H 0.07 0.87 7.80 -51.93 -0.40 0.46 16 8 C 0.08 1.20 5.81 -3.82 -0.02 1.18 16 9 N -0.68 -12.66 6.44 -113.78 -0.73 -13.40 16 10 C 0.07 1.47 5.62 -3.83 -0.02 1.45 16 11 C 0.03 0.71 5.23 -27.88 -0.15 0.57 16 12 C -0.52 -15.17 9.11 -34.44 -0.31 -15.49 16 13 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -27.46 13.29 55.43 0.74 -26.72 16 16 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 21 H 0.05 0.49 7.54 -51.93 -0.39 0.10 16 22 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 24 H 0.03 0.34 7.69 -51.93 -0.40 -0.06 16 25 H 0.06 0.60 7.78 -51.93 -0.40 0.19 16 26 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.09 0.96 7.94 -51.93 -0.41 0.55 16 29 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 1.16 7.91 -51.93 -0.41 0.75 16 31 H 0.33 5.93 8.73 -39.29 -0.34 5.58 16 32 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 294.66 15.07 4.44 4.44 Total: -1.00 -30.71 294.66 -9.20 -39.92 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -6.54 Total: -0.38 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: -0.71 Total: -13.32 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -1.38 Total: -47.67 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.71 -9.20 -39.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712555801.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.443 kcal (2) G-P(sol) polarization free energy of solvation -30.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds