Wall clock time and date at job start Mon Mar 30 2020 03:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46904 * 109.46797 * 2 1 4 4 C 1.47958 * 111.00195 * 70.63990 * 3 2 1 5 5 C 1.53940 * 86.17971 * 137.57848 * 4 3 2 6 6 C 1.47961 * 110.99513 * 170.00491 * 3 2 1 7 7 H 1.08990 * 113.86318 * 336.74013 * 6 3 2 8 8 C 1.53002 * 113.76087 * 108.10086 * 6 3 2 9 9 N 1.46897 * 109.47010 * 301.05995 * 8 6 3 10 10 C 1.46893 * 111.00104 * 180.02562 * 9 8 6 11 11 C 1.53004 * 109.47285 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.47211 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99761 * 359.97438 * 12 11 10 14 14 C 1.37871 * 119.99694 * 180.27574 * 12 11 10 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 11 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 11 17 17 H 1.48504 * 109.47266 * 60.00049 * 16 14 12 18 18 H 1.48504 * 109.46970 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47383 * 299.99456 * 16 14 12 20 20 H 1.08996 * 109.46864 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.46970 * 300.00160 * 1 2 3 22 22 H 1.09004 * 109.47271 * 59.99722 * 1 2 3 23 23 H 1.08991 * 109.47003 * 240.00430 * 2 1 3 24 24 H 1.08994 * 109.47366 * 119.99714 * 2 1 3 25 25 H 1.09000 * 113.75587 * 23.26588 * 4 3 2 26 26 H 1.08997 * 113.75952 * 251.89700 * 4 3 2 27 27 H 1.08997 * 113.73841 * 221.91741 * 5 4 3 28 28 H 1.09002 * 113.72942 * 90.63605 * 5 4 3 29 29 H 1.09000 * 109.46515 * 181.06244 * 8 6 3 30 30 H 1.09001 * 109.47055 * 61.06285 * 8 6 3 31 31 H 1.00908 * 111.00037 * 303.95605 * 9 8 6 32 32 H 1.09000 * 109.47823 * 59.99694 * 10 9 8 33 33 H 1.09007 * 109.47029 * 299.99462 * 10 9 8 34 34 H 1.09000 * 109.47211 * 59.98987 * 11 10 9 35 35 H 1.09007 * 109.46376 * 299.99529 * 11 10 9 36 36 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7646 2.0376 1.3032 5 6 3.1838 2.6197 1.1729 6 6 3.4789 1.4315 0.2398 7 1 3.8691 0.5543 0.7558 8 6 4.2954 1.8079 -0.9982 9 7 4.0391 0.8348 -2.0683 10 6 4.8085 1.1647 -3.2754 11 6 4.5155 0.1316 -4.3653 12 6 5.3044 0.4705 -5.6038 13 1 5.9498 1.3364 -5.6128 14 6 5.1974 -0.3213 -6.7273 15 7 4.4112 -1.3756 -6.7165 16 14 6.1692 0.1032 -8.2651 17 1 7.6210 0.0888 -7.9530 18 1 5.8812 -0.8968 -9.3245 19 1 5.7785 1.4548 -8.7403 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 1.8933 -0.5137 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.6516 1.3370 2.1305 26 1 0.9767 2.7900 1.2708 27 1 3.7531 2.5999 2.1022 28 1 3.2165 3.5882 0.6738 29 1 5.3565 1.8028 -0.7489 30 1 4.0061 2.8033 -1.3353 31 1 4.2386 -0.1046 -1.7583 32 1 5.8731 1.1550 -3.0417 33 1 4.5231 2.1557 -3.6285 34 1 3.4509 0.1418 -4.5988 35 1 4.8007 -0.8595 -4.0123 36 1 4.3357 -1.9324 -7.5071 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712555801.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:12 Heat of formation + Delta-G solvation = -3.065633 kcal Electronic energy + Delta-G solvation = -14103.706275 eV Core-core repulsion = 11815.260414 eV Total energy + Delta-G solvation = -2288.445861 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.92440 -37.26455 -35.00668 -33.60044 -31.70800 -28.45541 -28.03705 -25.80434 -23.54381 -22.59893 -22.46489 -20.43917 -18.50631 -17.22680 -16.84131 -16.39244 -16.26315 -15.61771 -15.10779 -14.76176 -14.42454 -14.18055 -14.01824 -13.26578 -13.20433 -12.84132 -12.77461 -12.53742 -12.48374 -12.14927 -12.03047 -11.93341 -11.57153 -11.42269 -11.38003 -11.09656 -10.56182 -9.55335 -9.18092 -8.20201 -6.32292 1.40018 1.43895 1.51805 2.40710 2.94842 3.12904 3.41182 3.69505 3.92682 4.16462 4.27306 4.30939 4.38084 4.48313 4.54953 4.60481 4.66896 4.73954 4.81396 4.93787 4.95576 4.99230 5.07181 5.18619 5.25713 5.36666 5.43619 5.63576 5.67526 5.78835 6.15155 6.29137 6.31829 6.57994 6.84873 7.37068 8.91918 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.048385 B = 0.005441 C = 0.005011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.548066 B = 5145.277580 C = 5586.247972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.020 3.980 3 N -0.484 5.484 4 C 0.001 3.999 5 C -0.127 4.127 6 C 0.031 3.969 7 H 0.080 0.920 8 C 0.080 3.920 9 N -0.687 5.687 10 C 0.086 3.914 11 C 0.034 3.966 12 C -0.547 4.547 13 H 0.060 0.940 14 C 0.000 4.000 15 N -0.933 5.933 16 Si 0.969 3.031 17 H -0.265 1.265 18 H -0.282 1.282 19 H -0.267 1.267 20 H 0.065 0.935 21 H 0.063 0.937 22 H 0.045 0.955 23 H 0.058 0.942 24 H 0.044 0.956 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.036 0.964 30 H 0.065 0.935 31 H 0.332 0.668 32 H 0.018 0.982 33 H 0.053 0.947 34 H -0.009 1.009 35 H -0.010 1.010 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.123 5.658 17.410 18.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 N -0.207 5.207 4 C -0.128 4.128 5 C -0.166 4.166 6 C -0.079 4.079 7 H 0.098 0.902 8 C -0.049 4.049 9 N -0.317 5.317 10 C -0.043 4.043 11 C -0.003 4.003 12 C -0.585 4.585 13 H 0.078 0.922 14 C -0.197 4.197 15 N -0.572 5.572 16 Si 0.793 3.207 17 H -0.190 1.190 18 H -0.207 1.207 19 H -0.192 1.192 20 H 0.084 0.916 21 H 0.082 0.918 22 H 0.064 0.936 23 H 0.076 0.924 24 H 0.062 0.938 25 H 0.096 0.904 26 H 0.108 0.892 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.149 0.851 32 H 0.036 0.964 33 H 0.072 0.928 34 H 0.009 0.991 35 H 0.008 0.992 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.047 6.097 16.483 18.034 hybrid contribution 1.436 -0.961 -0.161 1.735 sum -2.611 5.136 16.322 17.309 Atomic orbital electron populations 1.21655 0.94273 1.01929 1.01857 1.22524 0.96928 0.90939 1.00447 1.68550 1.06337 1.15340 1.30489 1.23901 0.98330 0.99021 0.91537 1.23329 0.96136 0.97718 0.99373 1.23499 0.90262 0.99181 0.94950 0.90194 1.21880 0.96541 0.96287 0.90235 1.60426 1.60379 1.05663 1.05281 1.21755 0.93535 0.98915 0.90111 1.18891 0.95195 0.93368 0.92858 1.21597 1.26645 1.11633 0.98662 0.92155 1.25999 0.96483 0.94734 1.02528 1.70107 1.39531 1.16981 1.30631 0.85451 0.79083 0.78193 0.77995 1.19008 1.20698 1.19182 0.91614 0.91832 0.93580 0.92356 0.93821 0.90376 0.89248 0.89031 0.89261 0.94597 0.91604 0.85115 0.96409 0.92824 0.99105 0.99195 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 9.98 71.98 0.72 -2.43 16 2 C 0.02 0.52 5.54 86.30 0.48 0.99 16 3 N -0.48 -12.64 6.00 -883.78 -5.30 -17.94 16 4 C 0.00 0.01 7.10 86.41 0.61 0.62 16 5 C -0.13 -2.29 7.84 31.24 0.25 -2.05 16 6 C 0.03 0.74 3.51 45.02 0.16 0.89 16 7 H 0.08 1.78 7.80 -2.39 -0.02 1.76 16 8 C 0.08 2.36 5.81 86.30 0.50 2.86 16 9 N -0.69 -25.83 6.44 -513.89 -3.31 -29.14 16 10 C 0.09 3.81 5.62 86.31 0.49 4.30 16 11 C 0.03 1.91 5.23 29.85 0.16 2.07 16 12 C -0.55 -32.25 9.11 25.60 0.23 -32.01 16 13 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16 14 C 0.00 0.03 5.46 84.65 0.46 0.49 16 15 N -0.93 -58.32 13.29 21.45 0.28 -58.04 16 16 Si 0.97 45.10 29.54 68.60 2.03 47.13 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 21 H 0.06 1.21 7.54 -2.38 -0.02 1.19 16 22 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.04 0.96 7.69 -2.39 -0.02 0.95 16 25 H 0.08 1.23 7.78 -2.39 -0.02 1.22 16 26 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.09 1.66 7.94 -2.39 -0.02 1.64 16 29 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 2.03 7.91 -2.39 -0.02 2.01 16 31 H 0.33 12.16 8.73 -89.69 -0.78 11.38 16 32 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.05 2.41 8.14 -2.38 -0.02 2.39 16 34 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 35 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 36 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -66.46 294.66 -2.01 -68.47 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.24 Total: 13.78 kcal Atomic # 6 Polarization: -28.32 SS G_CDS: 4.05 Total: -24.26 kcal Atomic # 7 Polarization: -96.79 SS G_CDS: -8.33 Total: -105.12 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -66.46 -2.01 -68.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712555801.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.406 kcal (2) G-P(sol) polarization free energy of solvation -66.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds