Wall clock time and date at job start Mon Mar 30 2020 03:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46970 * 2 1 4 4 C 1.52992 * 109.47690 * 239.99213 * 2 1 3 5 5 C 1.50704 * 109.47222 * 174.99848 * 4 2 1 6 6 H 1.08001 * 119.99794 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99871 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00088 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99973 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47016 * 90.00331 * 9 7 5 11 11 H 1.48494 * 109.47042 * 210.00537 * 9 7 5 12 12 H 1.48497 * 109.46808 * 329.99950 * 9 7 5 13 13 N 1.46904 * 109.46798 * 119.98794 * 2 1 3 14 14 C 1.46898 * 111.00216 * 275.00357 * 13 2 1 15 15 C 1.53005 * 109.47158 * 180.02562 * 14 13 2 16 16 H 1.08998 * 112.95649 * 53.35227 * 15 14 13 17 17 C 1.53927 * 113.75941 * 185.00452 * 15 14 13 18 18 C 1.53935 * 86.34331 * 138.03902 * 17 15 14 19 19 N 1.47962 * 86.30001 * 336.22106 * 18 17 15 20 20 C 1.46903 * 111.00056 * 137.63674 * 19 18 17 21 21 H 1.08998 * 109.46841 * 60.01079 * 1 2 3 22 22 H 1.09001 * 109.46508 * 180.02562 * 1 2 3 23 23 H 1.08992 * 109.47361 * 300.00740 * 1 2 3 24 24 H 1.08997 * 109.46976 * 295.00142 * 4 2 1 25 25 H 1.08999 * 109.47366 * 55.00009 * 4 2 1 26 26 H 0.97001 * 120.00078 * 179.97438 * 8 7 5 27 27 H 1.00899 * 111.00025 * 38.95959 * 13 2 1 28 28 H 1.08999 * 109.46837 * 60.00259 * 14 13 2 29 29 H 1.08997 * 109.47467 * 299.99851 * 14 13 2 30 30 H 1.09000 * 113.73841 * 23.67625 * 17 15 14 31 31 H 1.09008 * 113.73043 * 252.39570 * 17 15 14 32 32 H 1.09002 * 113.76229 * 90.59503 * 18 17 15 33 33 H 1.09005 * 113.75703 * 221.85028 * 18 17 15 34 34 H 1.09001 * 109.46717 * 81.53018 * 20 19 18 35 35 H 1.08995 * 109.47238 * 201.52309 * 20 19 18 36 36 H 1.09000 * 109.46983 * 321.53195 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2490 5 6 3.5421 -0.6149 -1.3124 6 1 4.0791 -0.0860 -0.5389 7 6 4.2307 -1.1937 -2.3574 8 7 3.5768 -1.8381 -3.2990 9 14 6.0925 -1.0624 -2.4356 10 1 6.7003 -2.2149 -1.7233 11 1 6.5300 -1.0707 -3.8546 12 1 6.5269 0.2030 -1.7911 13 7 2.0196 -0.6923 1.1996 14 6 2.0823 0.2230 2.3469 15 6 2.5960 -0.5323 3.5744 16 1 3.5390 -1.0479 3.3925 17 6 2.5858 0.3042 4.8665 18 6 2.0545 -0.9608 5.5644 19 7 1.5678 -1.3762 4.2303 20 6 1.8266 -2.8032 3.9962 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8898 24 1 1.7518 -1.7716 -1.2052 25 1 1.6056 -0.2620 -2.1369 26 1 4.0612 -2.2450 -4.0343 27 1 1.4495 -1.4977 1.4103 28 1 1.0869 0.6166 2.5524 29 1 2.7587 1.0465 2.1183 30 1 1.8727 1.1285 4.8499 31 1 3.5782 0.6061 5.2015 32 1 2.8385 -1.6032 5.9654 33 1 1.2572 -0.7648 6.2813 34 1 1.0493 -3.3970 4.4771 35 1 1.8248 -3.0018 2.9245 36 1 2.7977 -3.0695 4.4135 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712556735.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:47 Heat of formation + Delta-G solvation = 23.165378 kcal Electronic energy + Delta-G solvation = -14481.966514 eV Core-core repulsion = 12194.658114 eV Total energy + Delta-G solvation = -2287.308399 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.83284 -36.38160 -32.68907 -31.02671 -30.19751 -27.21453 -26.46045 -24.01519 -23.13001 -22.16409 -19.83443 -19.19447 -16.27994 -15.96574 -15.29483 -14.94252 -14.52298 -14.34426 -13.73970 -13.08126 -12.91024 -12.53066 -12.28261 -11.76704 -11.63613 -11.45024 -11.39470 -11.29430 -11.02678 -10.69096 -10.57690 -10.47011 -10.15306 -9.95685 -9.20946 -8.92172 -8.73510 -8.20800 -7.45294 -5.83073 -3.80302 3.41823 3.47336 3.51170 3.95703 4.51950 4.60298 4.72344 5.05551 5.26018 5.42557 5.43550 5.52694 5.56737 5.59430 5.64428 5.75767 5.84447 5.95337 6.03435 6.05008 6.10595 6.18918 6.32889 6.48333 6.56505 6.72496 7.09839 7.14739 7.65216 7.76797 8.11658 8.13553 8.27425 8.66653 9.25095 9.80498 11.29173 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.031250 B = 0.007523 C = 0.006782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.789359 B = 3720.881633 C = 4127.579438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.089 3.911 3 H 0.062 0.938 4 C 0.033 3.967 5 C -0.485 4.485 6 H 0.058 0.942 7 C 0.048 3.952 8 N -0.905 5.905 9 Si 0.889 3.111 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.276 1.276 13 N -0.664 5.664 14 C 0.079 3.921 15 C 0.036 3.964 16 H 0.087 0.913 17 C -0.143 4.143 18 C -0.001 4.001 19 N -0.483 5.483 20 C -0.010 4.010 21 H 0.054 0.946 22 H 0.049 0.951 23 H 0.038 0.962 24 H 0.015 0.985 25 H 0.017 0.983 26 H 0.256 0.744 27 H 0.331 0.669 28 H 0.027 0.973 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.504 2.277 15.213 15.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.020 4.020 3 H 0.081 0.919 4 C -0.005 4.005 5 C -0.524 4.524 6 H 0.076 0.924 7 C -0.151 4.151 8 N -0.546 5.546 9 Si 0.718 3.282 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.201 1.201 13 N -0.294 5.294 14 C -0.051 4.051 15 C -0.073 4.073 16 H 0.105 0.895 17 C -0.181 4.181 18 C -0.130 4.130 19 N -0.206 5.206 20 C -0.160 4.160 21 H 0.073 0.927 22 H 0.068 0.932 23 H 0.057 0.943 24 H 0.034 0.966 25 H 0.035 0.965 26 H 0.066 0.934 27 H 0.149 0.851 28 H 0.046 0.954 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -3.496 2.321 14.697 15.285 hybrid contribution 0.924 -0.286 0.275 1.006 sum -2.572 2.035 14.973 15.328 Atomic orbital electron populations 1.22535 0.99565 1.01128 1.00506 1.21774 0.89903 0.98050 0.92303 0.91922 1.19112 0.96157 0.95358 0.89841 1.21162 0.91966 1.32628 1.06661 0.92413 1.25014 0.97918 0.96037 0.96089 1.69969 1.35093 1.37140 1.12423 0.86637 0.86586 0.78229 0.76719 1.21000 1.21631 1.20122 1.60591 1.57577 1.08756 1.02493 1.21798 0.98691 0.95247 0.89387 1.23638 0.94936 0.94568 0.94172 0.89478 1.23370 1.01542 0.97455 0.95780 1.23858 0.98946 0.96671 0.93534 1.68572 1.42370 1.05204 1.04477 1.22867 0.99489 0.90535 1.03061 0.92658 0.93169 0.94322 0.96620 0.96527 0.93401 0.85148 0.95447 0.91022 0.89322 0.91121 0.91583 0.89832 0.91745 0.90479 0.94951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.18 9.16 37.16 0.34 -2.84 16 2 C 0.09 1.86 2.53 -67.71 -0.17 1.69 16 3 H 0.06 1.33 7.80 -51.93 -0.40 0.93 16 4 C 0.03 0.86 4.65 -27.89 -0.13 0.73 16 5 C -0.49 -13.95 8.84 -34.44 -0.30 -14.25 16 6 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 8 N -0.91 -27.89 13.29 55.43 0.74 -27.15 16 9 Si 0.89 22.42 29.54 -169.99 -5.02 17.40 16 10 H -0.28 -7.10 7.11 56.52 0.40 -6.69 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 13 N -0.66 -12.83 5.96 -106.73 -0.64 -13.46 16 14 C 0.08 1.27 5.52 -3.82 -0.02 1.25 16 15 C 0.04 0.50 3.51 -66.46 -0.23 0.27 16 16 H 0.09 1.31 7.94 -51.93 -0.41 0.90 16 17 C -0.14 -1.59 7.85 -25.79 -0.20 -1.79 16 18 C 0.00 -0.01 7.96 -2.77 -0.02 -0.03 16 19 N -0.48 -6.42 6.37 -237.88 -1.52 -7.94 16 20 C -0.01 -0.13 9.68 60.07 0.58 0.45 16 21 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 22 H 0.05 0.88 8.13 -51.93 -0.42 0.46 16 23 H 0.04 0.62 7.45 -51.93 -0.39 0.23 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 27 H 0.33 6.22 7.59 -39.29 -0.30 5.92 16 28 H 0.03 0.44 7.44 -51.93 -0.39 0.05 16 29 H 0.07 1.18 8.05 -51.93 -0.42 0.76 16 30 H 0.09 0.95 8.10 -51.93 -0.42 0.53 16 31 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 32 H 0.07 0.65 7.60 -51.93 -0.39 0.26 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 1.08 7.26 -51.93 -0.38 0.71 16 36 H 0.03 0.38 7.60 -51.93 -0.39 -0.01 16 LS Contribution 291.50 15.07 4.39 4.39 Total: -1.00 -30.52 291.50 -8.70 -39.22 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -6.39 Total: 0.74 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -0.26 Total: -13.20 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: -1.42 Total: -48.55 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.52 -8.70 -39.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712556735.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.382 kcal (2) G-P(sol) polarization free energy of solvation -30.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds