Wall clock time and date at job start Mon Mar 30 2020 03:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46970 * 2 1 4 4 C 1.52992 * 109.47690 * 239.99213 * 2 1 3 5 5 C 1.50704 * 109.47222 * 174.99848 * 4 2 1 6 6 H 1.08001 * 119.99794 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99871 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00088 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99973 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47016 * 90.00331 * 9 7 5 11 11 H 1.48494 * 109.47042 * 210.00537 * 9 7 5 12 12 H 1.48497 * 109.46808 * 329.99950 * 9 7 5 13 13 N 1.46904 * 109.46798 * 119.98794 * 2 1 3 14 14 C 1.46898 * 111.00216 * 275.00357 * 13 2 1 15 15 C 1.53005 * 109.47158 * 180.02562 * 14 13 2 16 16 H 1.08998 * 112.95649 * 53.35227 * 15 14 13 17 17 C 1.53927 * 113.75941 * 185.00452 * 15 14 13 18 18 C 1.53935 * 86.34331 * 138.03902 * 17 15 14 19 19 N 1.47962 * 86.30001 * 336.22106 * 18 17 15 20 20 C 1.46903 * 111.00056 * 137.63674 * 19 18 17 21 21 H 1.08998 * 109.46841 * 60.01079 * 1 2 3 22 22 H 1.09001 * 109.46508 * 180.02562 * 1 2 3 23 23 H 1.08992 * 109.47361 * 300.00740 * 1 2 3 24 24 H 1.08997 * 109.46976 * 295.00142 * 4 2 1 25 25 H 1.08999 * 109.47366 * 55.00009 * 4 2 1 26 26 H 0.97001 * 120.00078 * 179.97438 * 8 7 5 27 27 H 1.00899 * 111.00025 * 38.95959 * 13 2 1 28 28 H 1.08999 * 109.46837 * 60.00259 * 14 13 2 29 29 H 1.08997 * 109.47467 * 299.99851 * 14 13 2 30 30 H 1.09000 * 113.73841 * 23.67625 * 17 15 14 31 31 H 1.09008 * 113.73043 * 252.39570 * 17 15 14 32 32 H 1.09002 * 113.76229 * 90.59503 * 18 17 15 33 33 H 1.09005 * 113.75703 * 221.85028 * 18 17 15 34 34 H 1.09001 * 109.46717 * 81.53018 * 20 19 18 35 35 H 1.08995 * 109.47238 * 201.52309 * 20 19 18 36 36 H 1.09000 * 109.46983 * 321.53195 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2490 5 6 3.5421 -0.6149 -1.3124 6 1 4.0791 -0.0860 -0.5389 7 6 4.2307 -1.1937 -2.3574 8 7 3.5768 -1.8381 -3.2990 9 14 6.0925 -1.0624 -2.4356 10 1 6.7003 -2.2149 -1.7233 11 1 6.5300 -1.0707 -3.8546 12 1 6.5269 0.2030 -1.7911 13 7 2.0196 -0.6923 1.1996 14 6 2.0823 0.2230 2.3469 15 6 2.5960 -0.5323 3.5744 16 1 3.5390 -1.0479 3.3925 17 6 2.5858 0.3042 4.8665 18 6 2.0545 -0.9608 5.5644 19 7 1.5678 -1.3762 4.2303 20 6 1.8266 -2.8032 3.9962 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8898 24 1 1.7518 -1.7716 -1.2052 25 1 1.6056 -0.2620 -2.1369 26 1 4.0612 -2.2450 -4.0343 27 1 1.4495 -1.4977 1.4103 28 1 1.0869 0.6166 2.5524 29 1 2.7587 1.0465 2.1183 30 1 1.8727 1.1285 4.8499 31 1 3.5782 0.6061 5.2015 32 1 2.8385 -1.6032 5.9654 33 1 1.2572 -0.7648 6.2813 34 1 1.0493 -3.3970 4.4771 35 1 1.8248 -3.0018 2.9245 36 1 2.7977 -3.0695 4.4135 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712556735.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:46 Heat of formation + Delta-G solvation = 0.748013 kcal Electronic energy + Delta-G solvation = -14482.938604 eV Core-core repulsion = 12194.658114 eV Total energy + Delta-G solvation = -2288.280489 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.83865 -37.99851 -34.80270 -32.51486 -31.31912 -29.18403 -27.69277 -25.07780 -24.97534 -23.44785 -21.46366 -20.32342 -18.38858 -17.17020 -16.63460 -16.29565 -16.15970 -15.73723 -15.15522 -14.56172 -14.21910 -13.98818 -13.58726 -13.48538 -13.24707 -13.11523 -12.76370 -12.60402 -12.38261 -12.32194 -12.15804 -11.90785 -11.57317 -11.50786 -11.10235 -11.00919 -10.48340 -9.73662 -8.97747 -8.08938 -6.14040 1.41349 1.42895 1.53533 2.47775 2.98155 3.22699 3.39362 3.69509 4.03395 4.20213 4.26538 4.32383 4.41556 4.47431 4.53049 4.59213 4.62594 4.79514 4.81737 4.88695 4.98925 5.01466 5.03926 5.22000 5.29352 5.31818 5.47693 5.52096 5.68556 5.90592 6.13441 6.35449 6.52370 6.73868 6.99974 7.51427 9.03418 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.031250 B = 0.007523 C = 0.006782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.789359 B = 3720.881633 C = 4127.579438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.098 3.902 3 H 0.059 0.941 4 C 0.038 3.962 5 C -0.498 4.498 6 H 0.057 0.943 7 C -0.009 4.009 8 N -0.942 5.942 9 Si 0.959 3.041 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.265 1.265 13 N -0.680 5.680 14 C 0.084 3.916 15 C 0.030 3.970 16 H 0.072 0.928 17 C -0.131 4.131 18 C 0.004 3.996 19 N -0.498 5.498 20 C -0.008 4.008 21 H 0.056 0.944 22 H 0.048 0.952 23 H 0.062 0.938 24 H -0.013 1.013 25 H -0.008 1.008 26 H 0.258 0.742 27 H 0.332 0.668 28 H 0.034 0.966 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.055 0.945 36 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.995 2.965 17.126 17.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.011 4.011 3 H 0.078 0.922 4 C 0.000 4.000 5 C -0.536 4.536 6 H 0.075 0.925 7 C -0.204 4.204 8 N -0.585 5.585 9 Si 0.785 3.215 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.190 1.190 13 N -0.310 5.310 14 C -0.045 4.045 15 C -0.079 4.079 16 H 0.090 0.910 17 C -0.170 4.170 18 C -0.124 4.124 19 N -0.221 5.221 20 C -0.157 4.157 21 H 0.075 0.925 22 H 0.067 0.933 23 H 0.081 0.919 24 H 0.006 0.994 25 H 0.010 0.990 26 H 0.067 0.933 27 H 0.150 0.850 28 H 0.052 0.948 29 H 0.085 0.915 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.116 0.884 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.992 3.018 16.635 17.169 hybrid contribution 0.734 -0.517 -0.308 0.949 sum -2.259 2.501 16.327 16.671 Atomic orbital electron populations 1.22384 0.97011 1.01458 1.01753 1.21459 0.91910 0.96881 0.90892 0.92241 1.18997 0.95251 0.94009 0.91722 1.21488 0.93316 1.32299 1.06528 0.92512 1.25904 1.03099 0.95692 0.95743 1.70105 1.37130 1.38102 1.13117 0.85531 0.80390 0.78643 0.76922 1.20399 1.21118 1.18963 1.60453 1.57825 1.09544 1.03181 1.21802 0.99000 0.94765 0.88967 1.23556 0.94359 0.95573 0.94457 0.90978 1.23337 1.02648 0.97479 0.93489 1.23929 0.99639 0.96275 0.92563 1.68565 1.42301 1.05208 1.05988 1.22833 1.00337 0.90719 1.01847 0.92457 0.93312 0.91940 0.99439 0.99006 0.93287 0.84991 0.94765 0.91545 0.88726 0.89631 0.90513 0.88389 0.90490 0.92595 0.94330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.82 9.16 71.98 0.66 -5.16 16 2 C 0.10 4.12 2.53 44.91 0.11 4.24 16 3 H 0.06 2.52 7.80 -2.39 -0.02 2.50 16 4 C 0.04 2.03 4.65 29.85 0.14 2.17 16 5 C -0.50 -29.02 8.84 25.60 0.23 -28.79 16 6 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 7 C -0.01 -0.52 5.46 84.65 0.46 -0.06 16 8 N -0.94 -59.14 13.29 21.45 0.28 -58.85 16 9 Si 0.96 46.18 29.54 68.60 2.03 48.21 16 10 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 11 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 13 N -0.68 -26.17 5.96 -491.57 -2.93 -29.10 16 14 C 0.08 2.62 5.52 86.31 0.48 3.09 16 15 C 0.03 0.80 3.51 44.95 0.16 0.95 16 16 H 0.07 2.12 7.94 -2.39 -0.02 2.10 16 17 C -0.13 -2.54 7.85 31.23 0.25 -2.30 16 18 C 0.00 0.08 7.96 86.41 0.69 0.77 16 19 N -0.50 -12.28 6.37 -906.52 -5.78 -18.06 16 20 C -0.01 -0.20 9.68 127.69 1.24 1.04 16 21 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 22 H 0.05 1.69 8.13 -2.39 -0.02 1.68 16 23 H 0.06 1.88 7.45 -2.39 -0.02 1.86 16 24 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 25 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 26 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 27 H 0.33 12.54 7.59 -89.69 -0.68 11.85 16 28 H 0.03 1.02 7.44 -2.39 -0.02 1.00 16 29 H 0.07 2.11 8.05 -2.39 -0.02 2.09 16 30 H 0.09 1.74 8.10 -2.39 -0.02 1.72 16 31 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.08 1.28 7.60 -2.39 -0.02 1.26 16 33 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.06 1.57 7.26 -2.39 -0.02 1.55 16 36 H 0.04 0.86 7.60 -2.39 -0.02 0.84 16 Total: -1.00 -65.34 291.50 -1.65 -66.99 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.35 Total: 14.87 kcal Atomic # 6 Polarization: -28.45 SS G_CDS: 4.40 Total: -24.05 kcal Atomic # 7 Polarization: -97.59 SS G_CDS: -8.42 Total: -106.02 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -65.34 -1.65 -66.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712556735.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.739 kcal (2) G-P(sol) polarization free energy of solvation -65.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds