Wall clock time and date at job start Mon Mar 30 2020 03:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47481 * 2 1 4 4 C 1.52998 * 109.47095 * 119.99917 * 2 1 3 5 5 C 1.50706 * 109.47348 * 184.99906 * 4 2 1 6 6 H 1.08005 * 119.99758 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00102 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00217 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47057 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47389 * 300.00068 * 9 7 5 12 12 H 1.48504 * 109.47102 * 60.00417 * 9 7 5 13 13 N 1.46904 * 109.47130 * 239.99725 * 2 1 3 14 14 C 1.46898 * 110.99865 * 85.00265 * 13 2 1 15 15 C 1.53001 * 109.47011 * 180.02562 * 14 13 2 16 16 H 1.09003 * 112.74350 * 304.65827 * 15 14 13 17 17 C 1.53510 * 113.47664 * 173.89545 * 15 14 13 18 18 C 1.53625 * 83.53647 * 219.22341 * 17 15 14 19 19 N 1.47476 * 113.48227 * 75.43488 * 15 14 13 20 20 C 1.46895 * 111.00008 * 253.47361 * 19 15 14 21 21 H 1.08995 * 109.47138 * 60.00392 * 1 2 3 22 22 H 1.09003 * 109.47481 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47321 * 300.00432 * 1 2 3 24 24 H 1.09001 * 109.47671 * 65.00115 * 4 2 1 25 25 H 1.09006 * 109.47297 * 304.99834 * 4 2 1 26 26 H 0.97001 * 119.99646 * 359.97438 * 8 7 5 27 27 H 1.00899 * 111.00235 * 321.04660 * 13 2 1 28 28 H 1.09006 * 109.46900 * 299.99782 * 14 13 2 29 29 H 1.09002 * 109.47166 * 59.99870 * 14 13 2 30 30 H 1.09003 * 114.17243 * 332.85079 * 17 15 14 31 31 H 1.09003 * 114.17461 * 105.55823 * 17 15 14 32 32 H 1.09003 * 113.42622 * 271.21395 * 18 17 15 33 33 H 1.08999 * 113.57191 * 140.76230 * 18 17 15 34 34 H 1.09003 * 109.47715 * 59.99661 * 20 19 15 35 35 H 1.09001 * 109.47094 * 179.97438 * 20 19 15 36 36 H 1.09004 * 109.47167 * 299.99395 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5419 -0.6149 1.3128 6 1 4.0790 -0.0862 0.5392 7 6 4.2303 -1.1926 2.3583 8 7 3.5763 -1.8369 3.3001 9 14 6.0920 -1.0614 2.4366 10 1 6.5869 -1.7603 3.6498 11 1 6.6838 -1.6885 1.2275 12 1 6.4854 0.3694 2.4951 13 7 2.0196 -0.6926 -1.1994 14 6 2.0825 0.2225 -2.3469 15 6 2.5950 -0.5333 -3.5744 16 1 3.5547 -1.0197 -3.3995 17 6 2.5569 0.2980 -4.8644 18 6 2.1118 -1.0279 -5.4999 19 7 1.5870 -1.4235 -4.1797 20 6 1.8890 -2.8323 -3.8936 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.7516 -1.7715 1.2057 25 1 1.6053 -0.2617 2.1370 26 1 2.6096 -1.9053 3.2592 27 1 1.4495 -1.4980 -1.4100 28 1 1.0870 0.6162 -2.5525 29 1 2.7589 1.0461 -2.1182 30 1 1.7928 1.0753 -4.8721 31 1 3.5335 0.6481 -5.1988 32 1 2.9427 -1.6461 -5.8398 33 1 1.3370 -0.9097 -6.2575 34 1 1.8933 -2.9913 -2.8152 35 1 1.1299 -3.4668 -4.3510 36 1 2.8678 -3.0842 -4.3018 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712556737.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:49 Heat of formation + Delta-G solvation = 22.148875 kcal Electronic energy + Delta-G solvation = -14540.038514 eV Core-core repulsion = 12252.686035 eV Total energy + Delta-G solvation = -2287.352478 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.11730 -36.51049 -32.96675 -31.04892 -30.27479 -26.85162 -26.42883 -24.14622 -22.95644 -22.16337 -20.02932 -19.40287 -16.70977 -16.10020 -15.29262 -14.98182 -14.59694 -13.80990 -13.63383 -13.19479 -13.08973 -12.87049 -12.34585 -12.09049 -11.55151 -11.51438 -11.37522 -11.13988 -10.99457 -10.73805 -10.64747 -10.46277 -10.06605 -9.99916 -9.47052 -8.87159 -8.40245 -8.16587 -7.51558 -6.16616 -3.80972 3.52724 3.55800 3.74018 4.03090 4.43414 4.67186 4.69320 5.00756 5.22292 5.38321 5.40134 5.48912 5.54566 5.60327 5.60801 5.72869 5.74904 5.89008 5.94887 5.98840 6.04890 6.11258 6.26781 6.40696 6.47361 6.60669 6.95443 7.10108 7.38850 7.50811 7.96016 8.15256 8.47279 8.70846 9.09651 9.87569 11.23877 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.030986 B = 0.007648 C = 0.006879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.428354 B = 3660.056420 C = 4069.547989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.096 3.904 3 H 0.064 0.936 4 C 0.020 3.980 5 C -0.568 4.568 6 H 0.051 0.949 7 C 0.006 3.994 8 N -0.924 5.924 9 Si 1.068 2.932 10 H -0.286 1.286 11 H -0.290 1.290 12 H -0.291 1.291 13 N -0.663 5.663 14 C 0.077 3.923 15 C 0.032 3.968 16 H 0.086 0.914 17 C -0.143 4.143 18 C -0.004 4.004 19 N -0.476 5.476 20 C -0.012 4.012 21 H 0.040 0.960 22 H 0.049 0.951 23 H 0.054 0.946 24 H 0.006 0.994 25 H 0.006 0.994 26 H 0.265 0.735 27 H 0.330 0.670 28 H 0.027 0.973 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.329 2.483 -15.653 16.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.013 4.013 3 H 0.082 0.918 4 C -0.017 4.017 5 C -0.606 4.606 6 H 0.069 0.931 7 C -0.196 4.196 8 N -0.562 5.562 9 Si 0.897 3.103 10 H -0.211 1.211 11 H -0.217 1.217 12 H -0.218 1.218 13 N -0.293 5.293 14 C -0.053 4.053 15 C -0.077 4.077 16 H 0.104 0.896 17 C -0.181 4.181 18 C -0.133 4.133 19 N -0.199 5.199 20 C -0.161 4.161 21 H 0.059 0.941 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.024 0.976 25 H 0.025 0.975 26 H 0.075 0.925 27 H 0.148 0.852 28 H 0.045 0.955 29 H 0.089 0.911 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.042 2.170 -14.406 14.711 hybrid contribution -1.491 0.185 -1.327 2.005 sum -3.533 2.355 -15.734 16.297 Atomic orbital electron populations 1.22555 0.99540 1.01121 1.00651 1.21605 0.89759 0.97981 0.91974 0.91797 1.19232 0.97282 0.94689 0.90542 1.21937 0.91634 1.37091 1.09980 0.93087 1.25768 1.06586 0.94150 0.93074 1.70784 1.10033 1.40952 1.34480 0.83557 0.74953 0.75971 0.75773 1.21125 1.21688 1.21774 1.60560 1.57509 1.08767 1.02496 1.21845 0.98673 0.95279 0.89479 1.23493 0.95424 0.94395 0.94415 0.89596 1.23208 1.01976 0.96788 0.96178 1.23773 0.98926 0.96519 0.94057 1.68859 1.41502 1.04877 1.04618 1.22907 0.99435 0.90728 1.03049 0.94079 0.93206 0.92699 0.97588 0.97546 0.92452 0.85178 0.95504 0.91069 0.89092 0.90686 0.91571 0.90117 0.90412 0.91622 0.94725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.22 9.16 37.15 0.34 -2.88 16 2 C 0.10 2.04 2.53 -67.71 -0.17 1.87 16 3 H 0.06 1.39 7.80 -51.93 -0.40 0.98 16 4 C 0.02 0.52 3.97 -27.88 -0.11 0.41 16 5 C -0.57 -16.54 8.84 -34.44 -0.30 -16.85 16 6 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 7 C 0.01 0.18 5.46 -17.82 -0.10 0.08 16 8 N -0.92 -29.24 13.65 55.43 0.76 -28.48 16 9 Si 1.07 26.38 29.90 -169.99 -5.08 21.29 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 N -0.66 -13.00 5.96 -106.72 -0.64 -13.63 16 14 C 0.08 1.26 5.50 -3.82 -0.02 1.24 16 15 C 0.03 0.45 3.26 -71.44 -0.23 0.22 16 16 H 0.09 1.30 7.91 -51.93 -0.41 0.89 16 17 C -0.14 -1.58 8.02 -26.14 -0.21 -1.79 16 18 C 0.00 -0.04 7.70 -7.50 -0.06 -0.10 16 19 N -0.48 -6.37 6.52 -244.63 -1.60 -7.97 16 20 C -0.01 -0.15 9.68 60.06 0.58 0.43 16 21 H 0.04 0.66 7.45 -51.93 -0.39 0.27 16 22 H 0.05 0.88 8.13 -51.93 -0.42 0.46 16 23 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.01 0.16 8.01 -51.93 -0.42 -0.25 16 25 H 0.01 0.18 8.01 -51.93 -0.42 -0.24 16 26 H 0.27 8.37 7.22 -40.82 -0.29 8.07 16 27 H 0.33 6.29 7.33 -39.29 -0.29 6.00 16 28 H 0.03 0.43 7.44 -51.93 -0.39 0.04 16 29 H 0.07 1.19 8.06 -51.93 -0.42 0.77 16 30 H 0.09 0.97 8.12 -51.93 -0.42 0.55 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.66 7.54 -51.93 -0.39 0.27 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.12 7.01 -51.93 -0.36 0.76 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.03 0.41 7.52 -51.93 -0.39 0.02 16 LS Contribution 289.32 15.07 4.36 4.36 Total: -1.00 -31.39 289.32 -8.79 -40.17 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.30 Total: 1.63 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: -0.28 Total: -17.36 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: -1.47 Total: -50.09 kcal Atomic # 14 Polarization: 26.38 SS G_CDS: -5.08 Total: 21.29 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.39 -8.79 -40.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712556737.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.319 kcal (2) G-P(sol) polarization free energy of solvation -31.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds