Wall clock time and date at job start Mon Mar 30 2020 03:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47481 * 2 1 4 4 C 1.52998 * 109.47095 * 119.99917 * 2 1 3 5 5 C 1.50706 * 109.47348 * 184.99906 * 4 2 1 6 6 H 1.08005 * 119.99758 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00102 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00217 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47057 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47389 * 300.00068 * 9 7 5 12 12 H 1.48504 * 109.47102 * 60.00417 * 9 7 5 13 13 N 1.46904 * 109.47130 * 239.99725 * 2 1 3 14 14 C 1.46898 * 110.99865 * 85.00265 * 13 2 1 15 15 C 1.53001 * 109.47011 * 180.02562 * 14 13 2 16 16 H 1.09003 * 112.74350 * 304.65827 * 15 14 13 17 17 C 1.53510 * 113.47664 * 173.89545 * 15 14 13 18 18 C 1.53625 * 83.53647 * 219.22341 * 17 15 14 19 19 N 1.47476 * 113.48227 * 75.43488 * 15 14 13 20 20 C 1.46895 * 111.00008 * 253.47361 * 19 15 14 21 21 H 1.08995 * 109.47138 * 60.00392 * 1 2 3 22 22 H 1.09003 * 109.47481 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47321 * 300.00432 * 1 2 3 24 24 H 1.09001 * 109.47671 * 65.00115 * 4 2 1 25 25 H 1.09006 * 109.47297 * 304.99834 * 4 2 1 26 26 H 0.97001 * 119.99646 * 359.97438 * 8 7 5 27 27 H 1.00899 * 111.00235 * 321.04660 * 13 2 1 28 28 H 1.09006 * 109.46900 * 299.99782 * 14 13 2 29 29 H 1.09002 * 109.47166 * 59.99870 * 14 13 2 30 30 H 1.09003 * 114.17243 * 332.85079 * 17 15 14 31 31 H 1.09003 * 114.17461 * 105.55823 * 17 15 14 32 32 H 1.09003 * 113.42622 * 271.21395 * 18 17 15 33 33 H 1.08999 * 113.57191 * 140.76230 * 18 17 15 34 34 H 1.09003 * 109.47715 * 59.99661 * 20 19 15 35 35 H 1.09001 * 109.47094 * 179.97438 * 20 19 15 36 36 H 1.09004 * 109.47167 * 299.99395 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5419 -0.6149 1.3128 6 1 4.0790 -0.0862 0.5392 7 6 4.2303 -1.1926 2.3583 8 7 3.5763 -1.8369 3.3001 9 14 6.0920 -1.0614 2.4366 10 1 6.5869 -1.7603 3.6498 11 1 6.6838 -1.6885 1.2275 12 1 6.4854 0.3694 2.4951 13 7 2.0196 -0.6926 -1.1994 14 6 2.0825 0.2225 -2.3469 15 6 2.5950 -0.5333 -3.5744 16 1 3.5547 -1.0197 -3.3995 17 6 2.5569 0.2980 -4.8644 18 6 2.1118 -1.0279 -5.4999 19 7 1.5870 -1.4235 -4.1797 20 6 1.8890 -2.8323 -3.8936 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.7516 -1.7715 1.2057 25 1 1.6053 -0.2617 2.1370 26 1 2.6096 -1.9053 3.2592 27 1 1.4495 -1.4980 -1.4100 28 1 1.0870 0.6162 -2.5525 29 1 2.7589 1.0461 -2.1182 30 1 1.7928 1.0753 -4.8721 31 1 3.5335 0.6481 -5.1988 32 1 2.9427 -1.6461 -5.8398 33 1 1.3370 -0.9097 -6.2575 34 1 1.8933 -2.9913 -2.8152 35 1 1.1299 -3.4668 -4.3510 36 1 2.8678 -3.0842 -4.3018 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712556737.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:49 Heat of formation + Delta-G solvation = -1.289774 kcal Electronic energy + Delta-G solvation = -14541.054890 eV Core-core repulsion = 12252.686035 eV Total energy + Delta-G solvation = -2288.368854 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.12721 -38.16567 -35.10139 -32.49406 -31.43554 -28.83509 -27.68225 -25.11381 -25.01941 -23.43608 -21.71096 -20.49154 -18.87704 -17.22040 -16.46388 -16.34600 -15.84326 -15.61083 -15.31750 -14.97163 -14.48465 -14.08747 -13.64074 -13.45759 -13.29717 -13.02284 -12.80346 -12.50170 -12.43882 -12.29016 -12.15088 -11.92567 -11.72713 -11.58962 -11.09202 -10.60308 -10.46572 -9.87662 -9.06236 -8.56577 -6.21722 1.52992 1.62523 1.81310 2.62530 3.04058 3.22051 3.33966 3.59916 3.98692 4.09218 4.19072 4.25878 4.32618 4.39810 4.46153 4.51305 4.54344 4.73494 4.77406 4.81592 4.88712 4.97861 4.99010 5.07216 5.14227 5.23865 5.26229 5.40187 5.46714 6.09494 6.13333 6.31745 6.38085 6.63026 6.74641 7.55921 8.84276 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.030986 B = 0.007648 C = 0.006879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.428354 B = 3660.056420 C = 4069.547989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.104 3.896 3 H 0.058 0.942 4 C 0.022 3.978 5 C -0.576 4.576 6 H 0.048 0.952 7 C -0.049 4.049 8 N -0.949 5.949 9 Si 1.117 2.883 10 H -0.286 1.286 11 H -0.274 1.274 12 H -0.270 1.270 13 N -0.680 5.680 14 C 0.082 3.918 15 C 0.027 3.973 16 H 0.071 0.929 17 C -0.130 4.130 18 C 0.001 3.999 19 N -0.490 5.490 20 C -0.010 4.010 21 H 0.064 0.936 22 H 0.049 0.951 23 H 0.057 0.943 24 H -0.017 1.017 25 H -0.013 1.013 26 H 0.251 0.749 27 H 0.332 0.668 28 H 0.034 0.966 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.054 0.946 35 H 0.078 0.922 36 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.877 3.225 -17.686 18.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.006 4.006 3 H 0.076 0.924 4 C -0.015 4.015 5 C -0.614 4.614 6 H 0.066 0.934 7 C -0.245 4.245 8 N -0.589 5.589 9 Si 0.939 3.061 10 H -0.212 1.212 11 H -0.199 1.199 12 H -0.196 1.196 13 N -0.310 5.310 14 C -0.048 4.048 15 C -0.083 4.083 16 H 0.089 0.911 17 C -0.168 4.168 18 C -0.127 4.127 19 N -0.213 5.213 20 C -0.159 4.159 21 H 0.083 0.917 22 H 0.068 0.932 23 H 0.076 0.924 24 H 0.001 0.999 25 H 0.005 0.995 26 H 0.060 0.940 27 H 0.150 0.850 28 H 0.052 0.948 29 H 0.083 0.917 30 H 0.115 0.885 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.113 0.887 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.613 2.925 -16.469 16.805 hybrid contribution -1.674 -0.053 -0.719 1.822 sum -3.287 2.872 -17.188 17.733 Atomic orbital electron populations 1.22398 0.96805 1.01539 1.01939 1.21325 0.91924 0.96701 0.90632 0.92381 1.19165 0.96094 0.93723 0.92554 1.22271 0.93183 1.36365 1.09589 0.93381 1.27320 1.11063 0.93384 0.92696 1.70925 1.09317 1.42862 1.35769 0.82936 0.69685 0.77226 0.76276 1.21211 1.19925 1.19562 1.60434 1.57784 1.09591 1.03207 1.21865 0.98995 0.94794 0.89100 1.23448 0.94762 0.95404 0.94674 0.91109 1.23196 1.03134 0.96826 0.93647 1.23826 0.99623 0.96197 0.93097 1.68854 1.41490 1.04804 1.06156 1.22869 1.00306 0.91015 1.01692 0.91715 0.93232 0.92413 0.99869 0.99482 0.93956 0.84982 0.94762 0.91714 0.88483 0.89049 0.90550 0.88672 0.92688 0.90334 0.94075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.84 9.16 71.98 0.66 -5.18 16 2 C 0.10 4.41 2.53 44.91 0.11 4.52 16 3 H 0.06 2.51 7.80 -2.39 -0.02 2.49 16 4 C 0.02 1.19 3.97 29.85 0.12 1.31 16 5 C -0.58 -33.98 8.84 25.60 0.23 -33.75 16 6 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 7 C -0.05 -2.98 5.46 84.65 0.46 -2.51 16 8 N -0.95 -61.25 13.65 21.45 0.29 -60.96 16 9 Si 1.12 52.75 29.90 68.60 2.05 54.80 16 10 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 13 N -0.68 -26.50 5.96 -491.56 -2.93 -29.43 16 14 C 0.08 2.58 5.50 86.30 0.47 3.05 16 15 C 0.03 0.71 3.26 42.18 0.14 0.85 16 16 H 0.07 2.09 7.91 -2.39 -0.02 2.07 16 17 C -0.13 -2.48 8.02 30.98 0.25 -2.24 16 18 C 0.00 0.02 7.70 83.61 0.64 0.66 16 19 N -0.49 -12.19 6.52 -927.88 -6.05 -18.24 16 20 C -0.01 -0.24 9.68 127.69 1.24 1.00 16 21 H 0.06 1.95 7.45 -2.39 -0.02 1.93 16 22 H 0.05 1.71 8.13 -2.39 -0.02 1.69 16 23 H 0.06 1.95 8.14 -2.39 -0.02 1.94 16 24 H -0.02 -0.98 8.01 -2.39 -0.02 -1.00 16 25 H -0.01 -0.74 8.01 -2.38 -0.02 -0.76 16 26 H 0.25 16.43 7.22 -92.71 -0.67 15.76 16 27 H 0.33 12.65 7.33 -89.69 -0.66 11.99 16 28 H 0.03 1.03 7.44 -2.38 -0.02 1.01 16 29 H 0.06 2.09 8.06 -2.39 -0.02 2.07 16 30 H 0.10 1.77 8.12 -2.39 -0.02 1.75 16 31 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.08 1.29 7.54 -2.39 -0.02 1.27 16 33 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.05 1.58 7.01 -2.39 -0.02 1.57 16 35 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.04 0.93 7.52 -2.38 -0.02 0.91 16 Total: -1.00 -67.48 289.32 -1.85 -69.33 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.47 Total: 16.79 kcal Atomic # 6 Polarization: -36.61 SS G_CDS: 4.32 Total: -32.29 kcal Atomic # 7 Polarization: -99.94 SS G_CDS: -8.69 Total: -108.63 kcal Atomic # 14 Polarization: 52.75 SS G_CDS: 2.05 Total: 54.80 kcal Total: -67.48 -1.85 -69.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712556737.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.039 kcal (2) G-P(sol) polarization free energy of solvation -67.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds