Wall clock time and date at job start Mon Mar 30 2020 03:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47481 * 2 1 4 4 C 1.52998 * 109.47095 * 119.99917 * 2 1 3 5 5 C 1.50706 * 109.47348 * 184.99906 * 4 2 1 6 6 H 1.08005 * 119.99758 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00102 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00217 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47483 * 269.99808 * 9 7 5 11 11 H 1.48499 * 109.47134 * 30.00322 * 9 7 5 12 12 H 1.48507 * 109.46904 * 150.00145 * 9 7 5 13 13 N 1.46904 * 109.47130 * 239.99725 * 2 1 3 14 14 C 1.46898 * 110.99865 * 85.00265 * 13 2 1 15 15 C 1.53001 * 109.47011 * 180.02562 * 14 13 2 16 16 H 1.08995 * 112.96326 * 53.34872 * 15 14 13 17 17 C 1.53940 * 113.75793 * 184.99927 * 15 14 13 18 18 C 1.53935 * 86.33841 * 138.03382 * 17 15 14 19 19 N 1.47955 * 86.18176 * 336.27782 * 18 17 15 20 20 C 1.46902 * 110.99776 * 137.58449 * 19 18 17 21 21 H 1.08995 * 109.47138 * 60.00392 * 1 2 3 22 22 H 1.09003 * 109.47481 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47321 * 300.00432 * 1 2 3 24 24 H 1.09001 * 109.47671 * 65.00115 * 4 2 1 25 25 H 1.09006 * 109.47297 * 304.99834 * 4 2 1 26 26 H 0.97001 * 119.99646 * 359.97438 * 8 7 5 27 27 H 1.00900 * 110.99786 * 208.95174 * 13 2 1 28 28 H 1.09006 * 109.46900 * 299.99782 * 14 13 2 29 29 H 1.09002 * 109.47166 * 59.99870 * 14 13 2 30 30 H 1.08999 * 113.72889 * 252.39006 * 17 15 14 31 31 H 1.08995 * 113.73566 * 23.67865 * 17 15 14 32 32 H 1.09002 * 113.76060 * 90.60084 * 18 17 15 33 33 H 1.08999 * 113.75741 * 221.84680 * 18 17 15 34 34 H 1.08997 * 109.47273 * 320.63400 * 20 19 18 35 35 H 1.08997 * 109.47484 * 80.64346 * 20 19 18 36 36 H 1.09007 * 109.47051 * 200.63973 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5419 -0.6149 1.3128 6 1 4.0790 -0.0862 0.5392 7 6 4.2303 -1.1926 2.3583 8 7 3.5763 -1.8369 3.3001 9 14 6.0920 -1.0614 2.4366 10 1 6.6999 -2.2148 1.7256 11 1 6.5267 0.2032 1.7909 12 1 6.5295 -1.0684 3.8558 13 7 2.0196 -0.6926 -1.1994 14 6 2.0825 0.2225 -2.3469 15 6 2.5950 -0.5333 -3.5744 16 1 2.0249 -1.4380 -3.7855 17 6 2.8156 0.3624 -4.8068 18 6 4.1154 -0.4319 -5.0287 19 7 4.0609 -0.7344 -3.5814 20 6 4.4006 -2.1403 -3.3244 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.7516 -1.7715 1.2057 25 1 1.6053 -0.2617 2.1370 26 1 2.6096 -1.9053 3.2592 27 1 2.9173 -1.1205 -1.0287 28 1 1.0870 0.6162 -2.5525 29 1 2.7589 1.0461 -2.1182 30 1 2.0738 0.2181 -5.5923 31 1 2.9791 1.4120 -4.5627 32 1 3.9916 -1.3078 -5.6655 33 1 4.9644 0.1874 -5.3180 34 1 3.9579 -2.7683 -4.0975 35 1 5.4839 -2.2602 -3.3350 36 1 4.0119 -2.4357 -2.3498 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712556738.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:52 Heat of formation + Delta-G solvation = 15.154767 kcal Electronic energy + Delta-G solvation = -14629.589298 eV Core-core repulsion = 12341.933533 eV Total energy + Delta-G solvation = -2287.655766 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.83123 -36.43218 -32.99543 -30.99179 -30.17307 -27.05373 -26.44296 -23.95998 -23.07325 -22.13680 -19.76773 -19.20202 -16.69547 -16.11471 -15.42898 -14.98712 -14.37483 -14.25300 -13.67865 -13.08612 -12.97240 -12.58457 -12.22428 -12.08483 -11.55342 -11.37465 -11.28974 -11.08851 -10.98522 -10.73143 -10.62010 -10.49112 -10.12654 -10.09003 -9.44085 -8.65646 -8.49456 -8.30004 -7.63988 -6.32820 -4.01714 3.46293 3.49695 3.65625 4.00155 4.52092 4.57451 4.73287 5.08691 5.32264 5.40177 5.45821 5.50751 5.55354 5.63534 5.68398 5.74019 5.86310 6.03807 6.05722 6.16274 6.18720 6.30091 6.31937 6.50215 6.58788 6.83421 6.87062 7.19650 7.34323 7.46128 7.99326 8.21830 8.32211 8.49469 8.92272 9.70387 11.07889 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.025593 B = 0.009348 C = 0.007307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.805647 B = 2994.518517 C = 3830.768733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.094 3.906 3 H 0.030 0.970 4 C 0.007 3.993 5 C -0.601 4.601 6 H 0.047 0.953 7 C 0.017 3.983 8 N -0.913 5.913 9 Si 1.068 2.932 10 H -0.288 1.288 11 H -0.289 1.289 12 H -0.285 1.285 13 N -0.684 5.684 14 C 0.078 3.922 15 C 0.036 3.964 16 H 0.082 0.918 17 C -0.142 4.142 18 C -0.002 4.002 19 N -0.479 5.479 20 C -0.010 4.010 21 H 0.038 0.962 22 H 0.053 0.947 23 H 0.047 0.953 24 H 0.015 0.985 25 H 0.011 0.989 26 H 0.269 0.731 27 H 0.356 0.644 28 H 0.066 0.934 29 H 0.033 0.967 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.029 0.971 35 H 0.067 0.933 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.684 2.571 -14.954 15.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.016 4.016 3 H 0.048 0.952 4 C -0.031 4.031 5 C -0.639 4.639 6 H 0.066 0.934 7 C -0.187 4.187 8 N -0.549 5.549 9 Si 0.897 3.103 10 H -0.214 1.214 11 H -0.215 1.215 12 H -0.211 1.211 13 N -0.319 5.319 14 C -0.053 4.053 15 C -0.073 4.073 16 H 0.100 0.900 17 C -0.181 4.181 18 C -0.130 4.130 19 N -0.202 5.202 20 C -0.159 4.159 21 H 0.057 0.943 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.033 0.967 25 H 0.029 0.971 26 H 0.080 0.920 27 H 0.178 0.822 28 H 0.084 0.916 29 H 0.051 0.949 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.048 0.952 35 H 0.085 0.915 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.544 2.234 -13.734 13.925 hybrid contribution -0.978 0.351 -1.210 1.594 sum -1.521 2.585 -14.943 15.241 Atomic orbital electron populations 1.21809 0.96825 1.01193 0.99544 1.21438 0.93068 0.95893 0.91178 0.95223 1.19407 0.96619 0.95451 0.91583 1.22037 0.91882 1.38528 1.11452 0.93426 1.25779 1.06735 0.93492 0.92681 1.70747 1.10423 1.39777 1.33980 0.83551 0.74561 0.76112 0.76059 1.21445 1.21540 1.21098 1.60621 1.34865 1.32028 1.04346 1.21787 0.98968 0.94197 0.90305 1.23534 0.89912 0.98574 0.95300 0.89965 1.23378 0.97093 1.00160 0.97454 1.23864 0.98740 0.99449 0.90996 1.68499 1.14118 1.21617 1.15916 1.22878 1.01792 0.89259 1.01980 0.94311 0.92786 0.93438 0.96664 0.97089 0.92039 0.82206 0.91606 0.94909 0.91260 0.89249 0.91655 0.89703 0.95225 0.91469 0.90258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.41 37.15 0.35 -2.15 16 2 C 0.09 2.04 2.59 -67.71 -0.18 1.86 16 3 H 0.03 0.67 7.80 -51.93 -0.40 0.27 16 4 C 0.01 0.17 3.88 -27.88 -0.11 0.06 16 5 C -0.60 -17.15 8.12 -34.44 -0.28 -17.43 16 6 H 0.05 1.36 7.49 -52.48 -0.39 0.97 16 7 C 0.02 0.50 5.46 -17.82 -0.10 0.40 16 8 N -0.91 -28.30 13.65 55.43 0.76 -27.54 16 9 Si 1.07 25.92 29.90 -169.99 -5.08 20.84 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 N -0.68 -13.77 6.31 -106.72 -0.67 -14.44 16 14 C 0.08 1.31 5.52 -3.82 -0.02 1.29 16 15 C 0.04 0.52 3.50 -66.65 -0.23 0.29 16 16 H 0.08 1.18 7.93 -51.93 -0.41 0.77 16 17 C -0.14 -1.63 7.85 -25.80 -0.20 -1.83 16 18 C 0.00 -0.02 7.97 -2.77 -0.02 -0.04 16 19 N -0.48 -7.21 6.36 -238.97 -1.52 -8.73 16 20 C -0.01 -0.15 9.65 60.07 0.58 0.43 16 21 H 0.04 0.63 7.45 -51.93 -0.39 0.24 16 22 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.02 0.42 8.01 -51.93 -0.42 0.00 16 25 H 0.01 0.30 8.01 -51.93 -0.42 -0.12 16 26 H 0.27 8.33 7.22 -40.82 -0.29 8.04 16 27 H 0.36 7.97 6.31 -39.29 -0.25 7.72 16 28 H 0.07 1.02 7.44 -51.93 -0.39 0.64 16 29 H 0.03 0.60 8.06 -51.93 -0.42 0.18 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 1.02 8.10 -51.93 -0.42 0.60 16 32 H 0.07 0.68 7.62 -51.93 -0.40 0.28 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.03 0.37 7.62 -51.93 -0.40 -0.02 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.08 1.31 7.24 -51.93 -0.38 0.94 16 LS Contribution 288.49 15.07 4.35 4.35 Total: -1.00 -30.39 288.49 -8.65 -39.05 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -6.27 Total: 3.60 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -0.21 Total: -17.12 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: -1.44 Total: -50.72 kcal Atomic # 14 Polarization: 25.92 SS G_CDS: -5.08 Total: 20.84 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.39 -8.65 -39.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712556738.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.203 kcal (2) G-P(sol) polarization free energy of solvation -30.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds