Wall clock time and date at job start Mon Mar 30 2020 03:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47481 * 2 1 4 4 C 1.52998 * 109.47095 * 119.99917 * 2 1 3 5 5 C 1.50706 * 109.47348 * 184.99906 * 4 2 1 6 6 H 1.08005 * 119.99758 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00102 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00217 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47483 * 269.99808 * 9 7 5 11 11 H 1.48499 * 109.47134 * 30.00322 * 9 7 5 12 12 H 1.48507 * 109.46904 * 150.00145 * 9 7 5 13 13 N 1.46904 * 109.47130 * 239.99725 * 2 1 3 14 14 C 1.46898 * 110.99865 * 85.00265 * 13 2 1 15 15 C 1.53001 * 109.47011 * 180.02562 * 14 13 2 16 16 H 1.08995 * 112.96326 * 53.34872 * 15 14 13 17 17 C 1.53940 * 113.75793 * 184.99927 * 15 14 13 18 18 C 1.53935 * 86.33841 * 138.03382 * 17 15 14 19 19 N 1.47955 * 86.18176 * 336.27782 * 18 17 15 20 20 C 1.46902 * 110.99776 * 137.58449 * 19 18 17 21 21 H 1.08995 * 109.47138 * 60.00392 * 1 2 3 22 22 H 1.09003 * 109.47481 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47321 * 300.00432 * 1 2 3 24 24 H 1.09001 * 109.47671 * 65.00115 * 4 2 1 25 25 H 1.09006 * 109.47297 * 304.99834 * 4 2 1 26 26 H 0.97001 * 119.99646 * 359.97438 * 8 7 5 27 27 H 1.00900 * 110.99786 * 208.95174 * 13 2 1 28 28 H 1.09006 * 109.46900 * 299.99782 * 14 13 2 29 29 H 1.09002 * 109.47166 * 59.99870 * 14 13 2 30 30 H 1.08999 * 113.72889 * 252.39006 * 17 15 14 31 31 H 1.08995 * 113.73566 * 23.67865 * 17 15 14 32 32 H 1.09002 * 113.76060 * 90.60084 * 18 17 15 33 33 H 1.08999 * 113.75741 * 221.84680 * 18 17 15 34 34 H 1.08997 * 109.47273 * 320.63400 * 20 19 18 35 35 H 1.08997 * 109.47484 * 80.64346 * 20 19 18 36 36 H 1.09007 * 109.47051 * 200.63973 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5419 -0.6149 1.3128 6 1 4.0790 -0.0862 0.5392 7 6 4.2303 -1.1926 2.3583 8 7 3.5763 -1.8369 3.3001 9 14 6.0920 -1.0614 2.4366 10 1 6.6999 -2.2148 1.7256 11 1 6.5267 0.2032 1.7909 12 1 6.5295 -1.0684 3.8558 13 7 2.0196 -0.6926 -1.1994 14 6 2.0825 0.2225 -2.3469 15 6 2.5950 -0.5333 -3.5744 16 1 2.0249 -1.4380 -3.7855 17 6 2.8156 0.3624 -4.8068 18 6 4.1154 -0.4319 -5.0287 19 7 4.0609 -0.7344 -3.5814 20 6 4.4006 -2.1403 -3.3244 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.7516 -1.7715 1.2057 25 1 1.6053 -0.2617 2.1370 26 1 2.6096 -1.9053 3.2592 27 1 2.9173 -1.1205 -1.0287 28 1 1.0870 0.6162 -2.5525 29 1 2.7589 1.0461 -2.1182 30 1 2.0738 0.2181 -5.5923 31 1 2.9791 1.4120 -4.5627 32 1 3.9916 -1.3078 -5.6655 33 1 4.9644 0.1874 -5.3180 34 1 3.9579 -2.7683 -4.0975 35 1 5.4839 -2.2602 -3.3350 36 1 4.0119 -2.4357 -2.3498 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712556738.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:52 Heat of formation + Delta-G solvation = -7.333063 kcal Electronic energy + Delta-G solvation = -14630.564444 eV Core-core repulsion = 12341.933533 eV Total energy + Delta-G solvation = -2288.630911 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.90378 -38.15719 -35.10411 -32.53152 -31.34369 -28.96961 -27.81299 -25.10953 -25.01632 -23.49276 -21.42030 -20.37535 -18.90440 -17.35949 -16.72174 -16.34499 -15.78892 -15.64479 -15.60821 -14.87572 -14.33315 -14.00568 -13.62056 -13.39088 -13.33403 -13.02974 -12.78986 -12.54875 -12.36563 -12.30406 -12.24508 -11.97957 -11.62031 -11.50591 -11.23865 -10.65634 -10.56516 -9.71976 -9.27284 -8.69143 -6.38588 1.49143 1.57849 1.75846 2.53613 2.96074 3.12376 3.34135 3.65386 3.98237 4.15106 4.21298 4.27181 4.38343 4.44266 4.51348 4.55391 4.62080 4.70940 4.79245 4.85266 4.92536 4.97217 5.00048 5.06454 5.14049 5.27394 5.29425 5.42323 5.50033 5.96398 6.12924 6.17009 6.32518 6.52787 6.61397 7.41913 8.71767 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.025593 B = 0.009348 C = 0.007307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.805647 B = 2994.518517 C = 3830.768733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.099 3.901 3 H 0.018 0.982 4 C 0.011 3.989 5 C -0.606 4.606 6 H 0.043 0.957 7 C -0.035 4.035 8 N -0.937 5.937 9 Si 1.116 2.884 10 H -0.272 1.272 11 H -0.275 1.275 12 H -0.282 1.282 13 N -0.684 5.684 14 C 0.080 3.920 15 C 0.033 3.967 16 H 0.084 0.916 17 C -0.127 4.127 18 C 0.004 3.996 19 N -0.511 5.511 20 C -0.006 4.006 21 H 0.066 0.934 22 H 0.050 0.950 23 H 0.052 0.948 24 H -0.007 1.007 25 H -0.008 1.008 26 H 0.256 0.744 27 H 0.341 0.659 28 H 0.083 0.917 29 H 0.015 0.985 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.048 0.952 35 H 0.070 0.930 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.375 3.152 -17.083 17.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.011 4.011 3 H 0.036 0.964 4 C -0.026 4.026 5 C -0.644 4.644 6 H 0.061 0.939 7 C -0.233 4.233 8 N -0.574 5.574 9 Si 0.938 3.062 10 H -0.197 1.197 11 H -0.200 1.200 12 H -0.207 1.207 13 N -0.316 5.316 14 C -0.050 4.050 15 C -0.077 4.077 16 H 0.102 0.898 17 C -0.166 4.166 18 C -0.124 4.124 19 N -0.234 5.234 20 C -0.155 4.155 21 H 0.084 0.916 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.012 0.988 25 H 0.010 0.990 26 H 0.065 0.935 27 H 0.160 0.840 28 H 0.101 0.899 29 H 0.034 0.966 30 H 0.114 0.886 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.264 2.826 -15.890 16.142 hybrid contribution -1.102 0.183 -0.569 1.254 sum -1.367 3.009 -16.459 16.788 Atomic orbital electron populations 1.21708 0.93966 1.01548 1.01211 1.21321 0.95326 0.94448 0.90003 0.96380 1.19317 0.95614 0.94463 0.93237 1.22314 0.93199 1.37837 1.11060 0.93859 1.27283 1.11051 0.92681 0.92261 1.70881 1.09730 1.41619 1.35190 0.82942 0.69497 0.77278 0.76514 1.19704 1.19968 1.20717 1.60704 1.33749 1.32623 1.04538 1.21893 0.99700 0.93419 0.90010 1.23515 0.89656 0.99211 0.95290 0.89827 1.23317 0.97509 0.99441 0.96295 1.23942 0.99228 1.00172 0.89104 1.68493 1.14503 1.21727 1.18674 1.22808 1.01975 0.89763 1.00998 0.91551 0.93059 0.92874 0.98831 0.98999 0.93487 0.83997 0.89887 0.96645 0.88647 0.89310 0.89903 0.88913 0.93334 0.91158 0.93196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 9.41 71.98 0.68 -3.84 16 2 C 0.10 4.31 2.59 44.91 0.12 4.43 16 3 H 0.02 0.83 7.80 -2.39 -0.02 0.81 16 4 C 0.01 0.59 3.88 29.85 0.12 0.71 16 5 C -0.61 -35.29 8.12 25.60 0.21 -35.08 16 6 H 0.04 2.51 7.49 -2.91 -0.02 2.49 16 7 C -0.04 -2.08 5.46 84.65 0.46 -1.61 16 8 N -0.94 -59.27 13.65 21.45 0.29 -58.97 16 9 Si 1.12 52.11 29.90 68.60 2.05 54.16 16 10 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 13 N -0.68 -27.47 6.31 -491.56 -3.10 -30.57 16 14 C 0.08 2.58 5.52 86.30 0.48 3.06 16 15 C 0.03 0.88 3.50 45.02 0.16 1.04 16 16 H 0.08 2.23 7.93 -2.39 -0.02 2.21 16 17 C -0.13 -2.51 7.85 31.24 0.25 -2.27 16 18 C 0.00 0.08 7.97 86.41 0.69 0.77 16 19 N -0.51 -14.63 6.36 -909.96 -5.79 -20.41 16 20 C -0.01 -0.18 9.65 127.69 1.23 1.05 16 21 H 0.07 2.00 7.45 -2.39 -0.02 1.98 16 22 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 24 H -0.01 -0.38 8.01 -2.39 -0.02 -0.40 16 25 H -0.01 -0.47 8.01 -2.38 -0.02 -0.49 16 26 H 0.26 16.41 7.22 -92.71 -0.67 15.74 16 27 H 0.34 15.54 6.31 -89.69 -0.57 14.97 16 28 H 0.08 2.39 7.44 -2.38 -0.02 2.37 16 29 H 0.02 0.55 8.06 -2.39 -0.02 0.53 16 30 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.09 1.78 8.10 -2.39 -0.02 1.76 16 32 H 0.08 1.41 7.62 -2.39 -0.02 1.39 16 33 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.05 1.14 7.62 -2.39 -0.02 1.12 16 35 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.05 1.67 7.24 -2.38 -0.02 1.66 16 Total: -1.00 -66.00 288.49 -1.60 -67.60 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.56 Total: 19.94 kcal Atomic # 6 Polarization: -36.13 SS G_CDS: 4.38 Total: -31.75 kcal Atomic # 7 Polarization: -101.36 SS G_CDS: -8.60 Total: -109.95 kcal Atomic # 14 Polarization: 52.11 SS G_CDS: 2.05 Total: 54.16 kcal Total: -66.00 -1.60 -67.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712556738.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.264 kcal (2) G-P(sol) polarization free energy of solvation -65.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds