Wall clock time and date at job start Mon Mar 30 2020 03:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47188 * 2 1 4 4 C 1.53002 * 109.47442 * 239.99281 * 2 1 3 5 5 C 1.50696 * 109.46997 * 174.99707 * 4 2 1 6 6 H 1.07999 * 120.00319 * 0.02562 * 5 4 2 7 7 C 1.37885 * 119.99717 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99913 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47353 * 269.99586 * 9 7 5 11 11 H 1.48501 * 109.47293 * 30.00037 * 9 7 5 12 12 H 1.48504 * 109.46680 * 149.99835 * 9 7 5 13 13 N 1.46900 * 109.47017 * 119.99647 * 2 1 3 14 14 C 1.46907 * 111.00200 * 275.00169 * 13 2 1 15 15 C 1.52998 * 109.47207 * 180.02562 * 14 13 2 16 16 H 1.08994 * 112.74429 * 304.66390 * 15 14 13 17 17 C 1.53521 * 113.47330 * 173.89601 * 15 14 13 18 18 C 1.53632 * 83.53297 * 219.22711 * 17 15 14 19 19 N 1.47476 * 113.47878 * 75.43916 * 15 14 13 20 20 C 1.46899 * 110.99765 * 253.47018 * 19 15 14 21 21 H 1.09006 * 109.47001 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47663 * 300.00497 * 1 2 3 23 23 H 1.08999 * 109.47159 * 60.00509 * 1 2 3 24 24 H 1.09005 * 109.46767 * 55.00058 * 4 2 1 25 25 H 1.09002 * 109.47113 * 295.00398 * 4 2 1 26 26 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 27 27 H 1.00904 * 111.00551 * 38.95134 * 13 2 1 28 28 H 1.09001 * 109.46925 * 299.99954 * 14 13 2 29 29 H 1.08998 * 109.46731 * 59.99564 * 14 13 2 30 30 H 1.08999 * 114.16909 * 332.85751 * 17 15 14 31 31 H 1.08996 * 114.16786 * 105.55812 * 17 15 14 32 32 H 1.09004 * 113.41680 * 271.21142 * 18 17 15 33 33 H 1.08996 * 113.56886 * 140.76827 * 18 17 15 34 34 H 1.08994 * 109.47315 * 59.99811 * 20 19 15 35 35 H 1.09001 * 109.47001 * 180.02562 * 20 19 15 36 36 H 1.09001 * 109.46855 * 299.99578 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5419 -0.6150 -1.3126 6 1 4.0789 -0.0861 -0.5391 7 6 4.2304 -1.1928 -2.3582 8 7 5.5411 -1.1004 -2.4133 9 14 3.3013 -2.1069 -3.6963 10 1 3.1698 -3.5372 -3.3190 11 1 1.9506 -1.5110 -3.8567 12 1 4.0452 -1.9993 -4.9771 13 7 2.0196 -0.6924 1.1995 14 6 2.0823 0.2227 2.3470 15 6 2.5961 -0.5327 3.5743 16 1 2.0032 -1.4182 3.8027 17 6 2.8392 0.3712 4.7911 18 6 4.0724 -0.5232 4.9907 19 7 4.0478 -0.7902 3.5405 20 6 4.3250 -2.2055 3.2610 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 1.6054 -0.2619 -2.1369 25 1 1.7516 -1.7717 -1.2054 26 1 6.0255 -1.5072 -3.1487 27 1 1.4495 -1.4979 1.4102 28 1 2.7587 1.0463 2.1183 29 1 1.0869 0.6164 2.5525 30 1 3.0740 1.4053 4.5391 31 1 2.0872 0.2769 5.5744 32 1 3.8734 -1.4061 5.5982 33 1 4.9580 0.0221 5.3169 34 1 3.8996 -2.4750 2.2943 35 1 5.4027 -2.3678 3.2422 36 1 3.8783 -2.8238 4.0397 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712556739.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:54 Heat of formation + Delta-G solvation = 7.350954 kcal Electronic energy + Delta-G solvation = -14607.780964 eV Core-core repulsion = 12319.786800 eV Total energy + Delta-G solvation = -2287.994164 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.01469 -38.07172 -34.73427 -32.70326 -31.35205 -29.59387 -27.64327 -25.04351 -24.68701 -23.28878 -21.53278 -20.34914 -18.74242 -16.93657 -16.78670 -16.40961 -16.03258 -15.66187 -14.93817 -14.80254 -14.30553 -13.98303 -13.85449 -13.64835 -13.39322 -13.10575 -12.55394 -12.48866 -12.33139 -12.17818 -11.99255 -11.70934 -11.67173 -11.56887 -11.23949 -10.99951 -10.65311 -9.66064 -8.89447 -8.14150 -6.12776 1.37326 1.39445 1.50614 2.43982 3.11708 3.19764 3.41289 3.66184 4.02488 4.20580 4.30342 4.32916 4.42285 4.49331 4.50953 4.55026 4.62281 4.67902 4.81976 4.96120 4.98332 5.01093 5.12498 5.16759 5.22647 5.29919 5.33349 5.54978 5.62133 5.79196 6.28444 6.39681 6.56423 6.81704 6.96358 7.47082 9.03773 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.031736 B = 0.008499 C = 0.007180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.066099 B = 3293.545214 C = 3898.854182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.102 3.898 3 H 0.049 0.951 4 C -0.001 4.001 5 C -0.485 4.485 6 H 0.028 0.972 7 C -0.009 4.009 8 N -0.961 5.961 9 Si 0.949 3.051 10 H -0.273 1.273 11 H -0.247 1.247 12 H -0.289 1.289 13 N -0.681 5.681 14 C 0.084 3.916 15 C 0.032 3.968 16 H 0.084 0.916 17 C -0.126 4.126 18 C -0.007 4.007 19 N -0.495 5.495 20 C 0.001 3.999 21 H 0.060 0.940 22 H 0.063 0.937 23 H 0.061 0.939 24 H 0.018 0.982 25 H 0.014 0.986 26 H 0.259 0.741 27 H 0.334 0.666 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.086 -0.022 13.973 17.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.007 4.007 3 H 0.067 0.933 4 C -0.039 4.039 5 C -0.523 4.523 6 H 0.047 0.953 7 C -0.203 4.203 8 N -0.604 5.604 9 Si 0.774 3.226 10 H -0.198 1.198 11 H -0.170 1.170 12 H -0.216 1.216 13 N -0.312 5.312 14 C -0.046 4.046 15 C -0.078 4.078 16 H 0.102 0.898 17 C -0.164 4.164 18 C -0.135 4.135 19 N -0.218 5.218 20 C -0.148 4.148 21 H 0.079 0.921 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.036 0.964 25 H 0.032 0.968 26 H 0.068 0.932 27 H 0.152 0.848 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.106 0.894 31 H 0.120 0.880 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.827 0.353 13.228 16.482 hybrid contribution -0.854 -0.939 -0.278 1.300 sum -10.681 -0.586 12.950 16.796 Atomic orbital electron populations 1.22418 0.95831 1.02256 1.02273 1.21315 0.92392 0.96500 0.90542 0.93305 1.19566 0.94340 0.95779 0.94209 1.21298 0.92217 1.32162 1.06651 0.95335 1.26013 0.95549 0.97794 1.00922 1.70116 1.08541 1.48205 1.33540 0.85682 0.79631 0.79213 0.78111 1.19805 1.17018 1.21572 1.60268 1.58068 1.09537 1.03288 1.21833 0.98368 0.94906 0.89469 1.23446 0.90392 0.98805 0.95125 0.89823 1.23152 0.97812 0.98720 0.96718 1.23892 0.99703 0.99919 0.90004 1.68901 1.15689 1.20916 1.16292 1.22712 1.01365 0.89566 1.01165 0.92071 0.91757 0.92018 0.96359 0.96767 0.93212 0.84762 0.93496 0.93562 0.89373 0.88014 0.90097 0.90000 0.92660 0.92691 0.93203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.88 9.16 71.98 0.66 -4.22 16 2 C 0.10 4.00 2.53 44.91 0.11 4.11 16 3 H 0.05 2.08 7.80 -2.39 -0.02 2.06 16 4 C 0.00 -0.06 3.72 29.85 0.11 0.06 16 5 C -0.48 -29.22 9.39 25.60 0.24 -28.98 16 6 H 0.03 1.95 7.99 -2.91 -0.02 1.93 16 7 C -0.01 -0.53 5.47 84.66 0.46 -0.07 16 8 N -0.96 -63.75 13.96 21.45 0.30 -63.45 16 9 Si 0.95 46.51 27.47 68.60 1.88 48.39 16 10 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.25 -11.09 6.54 99.48 0.65 -10.44 16 12 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 13 N -0.68 -25.24 5.96 -491.57 -2.93 -28.17 16 14 C 0.08 2.61 5.50 86.30 0.47 3.09 16 15 C 0.03 0.85 3.26 42.19 0.14 0.99 16 16 H 0.08 1.99 7.91 -2.39 -0.02 1.97 16 17 C -0.13 -2.57 8.02 30.98 0.25 -2.32 16 18 C -0.01 -0.15 7.70 83.62 0.64 0.49 16 19 N -0.50 -15.88 6.52 -927.79 -6.05 -21.93 16 20 C 0.00 0.03 9.69 127.69 1.24 1.27 16 21 H 0.06 1.64 8.13 -2.38 -0.02 1.62 16 22 H 0.06 1.57 7.45 -2.39 -0.02 1.55 16 23 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.02 0.86 7.20 -2.38 -0.02 0.84 16 25 H 0.01 0.66 7.57 -2.39 -0.02 0.65 16 26 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 27 H 0.33 10.95 8.47 -89.69 -0.76 10.19 16 28 H 0.05 1.74 8.06 -2.39 -0.02 1.72 16 29 H 0.05 1.20 7.44 -2.39 -0.02 1.18 16 30 H 0.09 1.89 8.12 -2.39 -0.02 1.87 16 31 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.08 1.53 7.54 -2.38 -0.02 1.52 16 33 H 0.08 1.83 8.14 -2.39 -0.02 1.82 16 34 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.05 1.26 7.52 -2.39 -0.02 1.25 16 Total: -1.00 -71.90 289.32 -2.26 -74.16 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.21 Total: 16.57 kcal Atomic # 6 Polarization: -29.90 SS G_CDS: 4.33 Total: -25.57 kcal Atomic # 7 Polarization: -104.87 SS G_CDS: -8.68 Total: -113.55 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 1.88 Total: 48.39 kcal Total: -71.90 -2.26 -74.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712556739.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.507 kcal (2) G-P(sol) polarization free energy of solvation -71.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds