Wall clock time and date at job start Mon Mar 30 2020 03:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46904 * 109.46885 * 2 1 4 4 C 1.47479 * 110.99886 * 94.02983 * 3 2 1 5 5 C 1.53635 * 87.95042 * 138.64951 * 4 3 2 6 6 C 1.47488 * 110.99772 * 190.00185 * 3 2 1 7 7 H 1.09000 * 113.47346 * 336.12360 * 6 3 2 8 8 C 1.53000 * 113.47525 * 106.53049 * 6 3 2 9 9 N 1.46898 * 109.47374 * 303.89540 * 8 6 3 10 10 C 1.46893 * 111.00092 * 180.02562 * 9 8 6 11 11 H 1.09008 * 109.47138 * 34.99902 * 10 9 8 12 12 C 1.52992 * 109.47451 * 274.99685 * 10 9 8 13 13 C 1.50707 * 109.47341 * 154.99591 * 10 9 8 14 14 H 1.08002 * 119.99349 * 35.04146 * 13 10 9 15 15 C 1.37869 * 120.00116 * 215.31919 * 13 10 9 16 16 N 1.31521 * 120.00106 * 182.86617 * 15 13 10 17 17 Si 1.86798 * 120.00379 * 2.86807 * 15 13 10 18 18 H 1.48496 * 109.47073 * 85.15019 * 17 15 13 19 19 H 1.48502 * 109.46968 * 205.15181 * 17 15 13 20 20 H 1.48503 * 109.47083 * 325.14976 * 17 15 13 21 21 H 1.09009 * 109.47304 * 60.00188 * 1 2 3 22 22 H 1.08998 * 109.47224 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47192 * 299.99976 * 1 2 3 24 24 H 1.09000 * 109.47321 * 240.00560 * 2 1 3 25 25 H 1.08997 * 109.47677 * 119.99872 * 2 1 3 26 26 H 1.08999 * 113.47636 * 253.46674 * 4 3 2 27 27 H 1.09000 * 113.47573 * 23.93905 * 4 3 2 28 28 H 1.08999 * 114.20279 * 220.38988 * 5 4 3 29 29 H 1.08999 * 114.16904 * 87.65257 * 5 4 3 30 30 H 1.08999 * 109.46956 * 183.89542 * 8 6 3 31 31 H 1.09000 * 109.47301 * 63.89974 * 8 6 3 32 32 H 1.00903 * 110.99414 * 303.95574 * 9 8 6 33 33 H 1.08998 * 109.47797 * 185.42596 * 12 10 9 34 34 H 1.08999 * 109.46995 * 305.43176 * 12 10 9 35 35 H 1.09001 * 109.47067 * 65.42588 * 12 10 9 36 36 H 0.96996 * 120.00478 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 2.2869 1.8511 1.3734 5 6 3.5622 2.5206 0.8390 6 6 3.4742 1.4314 -0.2391 7 1 3.9884 0.5093 0.0321 8 6 3.8464 1.9268 -1.6380 9 7 3.1868 1.0868 -2.6466 10 6 3.5225 1.5337 -4.0051 11 1 4.5501 1.8970 -4.0246 12 6 2.5751 2.6611 -4.4199 13 6 3.3796 0.3794 -4.9634 14 1 2.6034 -0.3559 -4.8110 15 6 4.2433 0.2590 -6.0313 16 7 4.0839 -0.7161 -6.8993 17 14 5.6400 1.4808 -6.2454 18 1 6.8078 1.0440 -5.4388 19 1 6.0247 1.5467 -7.6782 20 1 5.1977 2.8231 -5.7894 21 1 -0.3634 0.5138 -0.8901 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.5460 2.5597 1.7435 27 1 2.4845 1.0414 2.0759 28 1 4.4255 2.4276 1.4979 29 1 3.4113 3.5329 0.4640 30 1 4.9271 1.8697 -1.7681 31 1 3.5203 2.9602 -1.7562 32 1 3.4228 0.1143 -2.5175 33 1 2.7603 2.9271 -5.4605 34 1 1.5432 2.3282 -4.3080 35 1 2.7467 3.5314 -3.7864 36 1 4.6913 -0.8006 -7.6508 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712556886.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:15 Heat of formation + Delta-G solvation = 29.541652 kcal Electronic energy + Delta-G solvation = -14652.397824 eV Core-core repulsion = 12365.365921 eV Total energy + Delta-G solvation = -2287.031903 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.00908 -35.76296 -32.72440 -32.19694 -29.91876 -27.09284 -26.31621 -25.05843 -22.33121 -21.61575 -19.66721 -19.42102 -16.96642 -16.03050 -15.42989 -14.89069 -14.39238 -13.89127 -13.69063 -13.02050 -12.87348 -12.48401 -12.31255 -12.18872 -11.95302 -11.40959 -11.14746 -11.02989 -10.86862 -10.70620 -10.57191 -10.45250 -10.20200 -10.02958 -9.69991 -8.92836 -8.61284 -8.53919 -7.27705 -6.09083 -4.09215 3.25852 3.35006 3.38501 4.15322 4.40028 4.57551 4.84196 5.11426 5.24191 5.32890 5.38103 5.48290 5.60749 5.68509 5.74358 5.81995 5.85656 5.99937 6.04312 6.17843 6.29202 6.35470 6.47069 6.53732 6.73065 6.78460 6.91989 6.98401 7.37705 7.49253 7.68631 8.06139 8.47337 8.72269 9.00733 9.55664 11.04100 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.039126 B = 0.007931 C = 0.007192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.460817 B = 3529.601988 C = 3892.051795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.019 3.981 3 N -0.442 5.442 4 C -0.009 4.009 5 C -0.142 4.142 6 C 0.032 3.968 7 H 0.069 0.931 8 C 0.075 3.925 9 N -0.672 5.672 10 C 0.180 3.820 11 H 0.000 1.000 12 C -0.122 4.122 13 C -0.515 4.515 14 H 0.079 0.921 15 C 0.072 3.928 16 N -0.899 5.899 17 Si 0.876 3.124 18 H -0.279 1.279 19 H -0.288 1.288 20 H -0.265 1.265 21 H 0.066 0.934 22 H 0.051 0.949 23 H 0.044 0.956 24 H 0.083 0.917 25 H 0.031 0.969 26 H 0.079 0.921 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.018 0.982 31 H 0.068 0.932 32 H 0.333 0.667 33 H 0.040 0.960 34 H 0.051 0.949 35 H 0.017 0.983 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.092 4.487 15.084 15.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.109 4.109 3 N -0.165 5.165 4 C -0.138 4.138 5 C -0.180 4.180 6 C -0.078 4.078 7 H 0.087 0.913 8 C -0.056 4.056 9 N -0.303 5.303 10 C 0.072 3.928 11 H 0.018 0.982 12 C -0.180 4.180 13 C -0.554 4.554 14 H 0.097 0.903 15 C -0.131 4.131 16 N -0.537 5.537 17 Si 0.704 3.296 18 H -0.205 1.205 19 H -0.215 1.215 20 H -0.190 1.190 21 H 0.085 0.915 22 H 0.070 0.930 23 H 0.064 0.936 24 H 0.102 0.898 25 H 0.050 0.950 26 H 0.097 0.903 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.111 0.889 30 H 0.036 0.964 31 H 0.087 0.913 32 H 0.150 0.850 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.036 0.964 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.109 5.079 14.465 15.475 hybrid contribution 2.235 -0.345 0.186 2.269 sum 0.125 4.735 14.651 15.397 Atomic orbital electron populations 1.21603 0.95003 1.00806 1.02113 1.22607 0.96823 0.90572 1.00937 1.68920 1.13751 1.19710 1.14085 1.23866 0.97547 0.99573 0.92844 1.23222 0.97536 0.99430 0.97856 1.23408 0.90523 0.97684 0.96203 0.91275 1.21884 0.94867 0.98691 0.90111 1.60643 1.60961 1.05738 1.02924 1.19548 0.92274 0.94777 0.86194 0.98233 1.21810 1.00978 0.96749 0.98500 1.21099 1.16486 1.09068 1.08738 0.90325 1.25032 0.97348 0.95088 0.95597 1.69903 1.38064 1.31756 1.13933 0.86876 0.82882 0.82726 0.77129 1.20495 1.21459 1.18955 0.91532 0.92981 0.93643 0.89813 0.95050 0.90256 0.92099 0.91199 0.88943 0.96358 0.91337 0.84952 0.94047 0.93025 0.96385 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 10.24 37.15 0.38 -1.42 16 2 C 0.02 0.27 5.54 -3.83 -0.02 0.25 16 3 N -0.44 -6.52 6.00 -236.27 -1.42 -7.93 16 4 C -0.01 -0.11 7.71 -7.47 -0.06 -0.16 16 5 C -0.14 -1.66 8.01 -26.14 -0.21 -1.87 16 6 C 0.03 0.46 3.27 -71.42 -0.23 0.22 16 7 H 0.07 0.96 7.91 -51.93 -0.41 0.55 16 8 C 0.07 1.32 5.61 -3.83 -0.02 1.30 16 9 N -0.67 -14.07 6.02 -107.96 -0.65 -14.72 16 10 C 0.18 4.35 2.24 -68.87 -0.15 4.20 16 11 H 0.00 0.00 5.02 -51.92 -0.26 -0.26 16 12 C -0.12 -2.79 9.36 37.15 0.35 -2.44 16 13 C -0.52 -14.52 8.84 -34.44 -0.30 -14.83 16 14 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 15 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 16 N -0.90 -27.46 13.96 55.43 0.77 -26.68 16 17 Si 0.88 21.76 26.95 -169.99 -4.58 17.18 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.26 -6.38 6.88 56.52 0.39 -5.99 16 21 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.08 1.33 7.61 -51.93 -0.40 0.94 16 25 H 0.03 0.39 7.30 -51.93 -0.38 0.01 16 26 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 0.65 7.42 -51.93 -0.39 0.26 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.09 1.10 7.95 -51.93 -0.41 0.68 16 30 H 0.02 0.33 8.05 -51.93 -0.42 -0.09 16 31 H 0.07 1.23 7.30 -51.93 -0.38 0.86 16 32 H 0.33 7.07 8.06 -39.29 -0.32 6.75 16 33 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.02 0.36 7.60 -51.93 -0.39 -0.03 16 36 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 287.87 15.07 4.34 4.34 Total: -1.00 -29.75 287.87 -8.19 -37.94 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -6.28 Total: 2.67 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -0.37 Total: -12.79 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: -1.29 Total: -49.34 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.58 Total: 17.18 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.75 -8.19 -37.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712556886.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.478 kcal (2) G-P(sol) polarization free energy of solvation -29.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds