Wall clock time and date at job start Mon Mar 30 2020 03:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46906 * 109.47302 * 2 1 4 4 C 1.47475 * 110.99610 * 265.97156 * 3 2 1 5 5 C 1.53511 * 87.93065 * 221.29404 * 4 3 2 6 6 C 1.47475 * 111.00114 * 169.99705 * 3 2 1 7 7 H 1.09002 * 113.47780 * 23.93729 * 6 3 2 8 8 C 1.52994 * 113.47811 * 253.52392 * 6 3 2 9 9 N 1.46904 * 109.46715 * 55.00635 * 8 6 3 10 10 C 1.46903 * 110.99795 * 179.97438 * 9 8 6 11 11 H 1.08999 * 109.46989 * 324.99668 * 10 9 8 12 12 C 1.52998 * 109.47142 * 84.99960 * 10 9 8 13 13 C 1.50704 * 109.46919 * 204.99648 * 10 9 8 14 14 H 1.07997 * 119.99910 * 359.97438 * 13 10 9 15 15 C 1.37877 * 119.99777 * 179.97438 * 13 10 9 16 16 N 1.31512 * 120.00385 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 119.99870 * 180.02562 * 15 13 10 18 18 H 1.48498 * 109.47061 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47118 * 120.00023 * 17 15 13 20 20 H 1.48495 * 109.47160 * 240.00317 * 17 15 13 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00356 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00337 * 1 2 3 24 24 H 1.08998 * 109.47533 * 119.99464 * 2 1 3 25 25 H 1.08996 * 109.47853 * 239.99807 * 2 1 3 26 26 H 1.08998 * 113.47903 * 336.05888 * 4 3 2 27 27 H 1.09001 * 113.47939 * 106.52660 * 4 3 2 28 28 H 1.09005 * 114.17221 * 272.37298 * 5 4 3 29 29 H 1.09000 * 114.34444 * 139.68600 * 5 4 3 30 30 H 1.09004 * 109.47287 * 174.99886 * 8 6 3 31 31 H 1.08993 * 109.47530 * 295.00279 * 8 6 3 32 32 H 1.00895 * 111.00310 * 56.04288 * 9 8 6 33 33 H 1.08999 * 109.47176 * 179.97438 * 12 10 9 34 34 H 1.09000 * 109.47006 * 299.99860 * 12 10 9 35 35 H 1.08999 * 109.47417 * 59.99970 * 12 10 9 36 36 H 0.96995 * 120.00385 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.2870 1.8510 -1.3734 5 6 3.5605 2.5210 -0.8387 6 6 3.4742 1.4313 0.2391 7 1 3.9886 0.5097 -0.0330 8 6 3.8464 1.9255 1.6384 9 7 3.1661 1.1008 2.6459 10 6 3.5012 1.5469 4.0049 11 1 4.5347 1.8923 4.0294 12 6 2.5710 2.6923 4.4096 13 6 3.3321 0.3989 4.9664 14 1 3.0077 -0.5655 4.6043 15 6 3.5915 0.5798 6.3084 16 7 3.9860 1.7543 6.7495 17 14 3.3827 -0.8434 7.5002 18 1 2.9334 -2.0486 6.7581 19 1 4.6800 -1.1270 8.1648 20 1 2.3691 -0.4862 8.5251 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.8934 -0.5137 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 2.4846 1.0413 -2.0759 27 1 1.5461 2.5596 -1.7436 28 1 3.4085 3.5331 -0.4635 29 1 4.4254 2.4312 -1.4960 30 1 4.9252 1.8500 1.7754 31 1 3.5377 2.9648 1.7508 32 1 3.3857 0.1239 2.5219 33 1 2.8193 3.0230 5.4181 34 1 2.6932 3.5226 3.7141 35 1 1.5374 2.3470 4.3851 36 1 4.1682 1.8816 7.6937 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712556887.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:17 Heat of formation + Delta-G solvation = 9.225792 kcal Electronic energy + Delta-G solvation = -14618.996563 eV Core-core repulsion = 12331.083698 eV Total energy + Delta-G solvation = -2287.912865 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.08004 -37.47505 -34.53092 -33.54954 -31.04289 -28.16289 -27.71229 -27.06578 -23.61532 -22.73707 -21.66291 -20.59080 -18.52702 -17.11942 -16.89204 -16.19755 -16.02476 -15.57079 -14.94044 -14.73317 -14.15161 -13.96134 -13.50360 -13.28189 -13.08121 -12.88539 -12.65113 -12.53919 -12.42546 -12.19908 -12.13770 -11.93863 -11.64667 -11.48796 -11.15569 -10.82580 -10.57818 -9.60596 -8.93737 -8.13503 -6.27852 1.40148 1.41786 1.53758 2.40859 3.09372 3.15186 3.56119 3.72444 3.99936 4.18424 4.35513 4.42251 4.44948 4.55211 4.68119 4.74829 4.82445 4.84217 4.96028 4.99790 5.02893 5.09911 5.19191 5.24748 5.27433 5.43670 5.47402 5.62988 5.70773 5.86986 6.22713 6.35354 6.50451 6.81967 7.03245 7.42770 8.92573 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.039879 B = 0.007340 C = 0.006683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.958252 B = 3813.717783 C = 4188.727548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.020 3.980 3 N -0.472 5.472 4 C -0.001 4.001 5 C -0.130 4.130 6 C 0.031 3.969 7 H 0.078 0.922 8 C 0.080 3.920 9 N -0.672 5.672 10 C 0.216 3.784 11 H -0.035 1.035 12 C -0.107 4.107 13 C -0.535 4.535 14 H 0.058 0.942 15 C 0.011 3.989 16 N -0.919 5.919 17 Si 0.964 3.036 18 H -0.267 1.267 19 H -0.279 1.279 20 H -0.280 1.280 21 H 0.065 0.935 22 H 0.057 0.943 23 H 0.040 0.960 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.014 0.986 31 H 0.055 0.945 32 H 0.325 0.675 33 H 0.055 0.945 34 H 0.017 0.983 35 H 0.023 0.977 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.928 -1.904 -15.204 15.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.108 4.108 3 N -0.195 5.195 4 C -0.130 4.130 5 C -0.168 4.168 6 C -0.079 4.079 7 H 0.096 0.904 8 C -0.050 4.050 9 N -0.302 5.302 10 C 0.107 3.893 11 H -0.017 1.017 12 C -0.165 4.165 13 C -0.574 4.574 14 H 0.076 0.924 15 C -0.188 4.188 16 N -0.559 5.559 17 Si 0.789 3.211 18 H -0.191 1.191 19 H -0.205 1.205 20 H -0.206 1.206 21 H 0.084 0.916 22 H 0.076 0.924 23 H 0.059 0.941 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.098 0.902 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.113 0.887 30 H 0.032 0.968 31 H 0.073 0.927 32 H 0.141 0.859 33 H 0.074 0.926 34 H 0.036 0.964 35 H 0.042 0.958 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.962 -1.123 -14.618 14.957 hybrid contribution 1.388 -1.311 0.691 2.030 sum -1.573 -2.433 -13.928 14.226 Atomic orbital electron populations 1.21559 0.94518 1.01491 1.01460 1.22585 0.97243 0.90418 1.00596 1.68909 1.13797 1.20237 1.16524 1.23869 0.97526 1.00029 0.91575 1.23162 0.98685 0.98198 0.96773 1.23406 0.90822 0.99113 0.94574 0.90393 1.21874 0.94161 0.97770 0.91235 1.60583 1.60964 1.05818 1.02799 1.18906 0.91091 0.93835 0.85429 1.01704 1.21475 0.98239 0.96758 1.00068 1.21614 1.45526 0.96911 0.93304 0.92415 1.25761 0.94625 0.98359 1.00008 1.70037 1.46765 1.23923 1.15169 0.85423 0.77701 0.79391 0.78589 1.19074 1.20483 1.20570 0.91580 0.92384 0.94060 0.92314 0.93009 0.90197 0.89544 0.89536 0.88677 0.96773 0.92651 0.85868 0.92603 0.96388 0.95763 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 10.24 71.98 0.74 -2.62 16 2 C 0.02 0.55 5.54 86.30 0.48 1.02 16 3 N -0.47 -13.70 5.98 -902.20 -5.39 -19.10 16 4 C 0.00 -0.03 7.71 83.58 0.64 0.61 16 5 C -0.13 -2.87 8.00 30.94 0.25 -2.62 16 6 C 0.03 0.88 3.28 42.19 0.14 1.02 16 7 H 0.08 2.06 7.91 -2.39 -0.02 2.04 16 8 C 0.08 2.97 5.63 86.30 0.49 3.46 16 9 N -0.67 -29.80 6.00 -495.45 -2.97 -32.77 16 10 C 0.22 11.53 2.60 44.17 0.11 11.64 16 11 H -0.03 -2.03 7.80 -2.39 -0.02 -2.05 16 12 C -0.11 -5.68 9.19 71.98 0.66 -5.02 16 13 C -0.54 -30.35 8.59 25.60 0.22 -30.13 16 14 H 0.06 3.21 7.62 -2.91 -0.02 3.19 16 15 C 0.01 0.65 5.30 84.65 0.45 1.09 16 16 N -0.92 -54.36 11.32 21.45 0.24 -54.11 16 17 Si 0.96 44.33 29.54 68.60 2.03 46.36 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 21 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 22 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 24 H 0.06 1.84 7.55 -2.39 -0.02 1.83 16 25 H 0.05 1.17 7.30 -2.39 -0.02 1.15 16 26 H 0.08 1.42 7.42 -2.39 -0.02 1.40 16 27 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.09 2.03 7.94 -2.38 -0.02 2.01 16 29 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.01 0.54 8.05 -2.39 -0.02 0.52 16 31 H 0.05 2.19 7.17 -2.39 -0.02 2.17 16 32 H 0.32 14.09 7.87 -89.70 -0.71 13.38 16 33 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 34 H 0.02 0.85 7.45 -2.39 -0.02 0.83 16 35 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -62.42 287.55 -1.59 -64.01 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 0.33 Total: 17.15 kcal Atomic # 6 Polarization: -25.71 SS G_CDS: 4.18 Total: -21.53 kcal Atomic # 7 Polarization: -97.86 SS G_CDS: -8.12 Total: -105.98 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -62.42 -1.59 -64.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712556887.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.240 kcal (2) G-P(sol) polarization free energy of solvation -62.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds