Wall clock time and date at job start Mon Mar 30 2020 03:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46903 * 109.47394 * 2 1 4 4 C 1.47476 * 111.00049 * 94.02869 * 3 2 1 5 5 C 1.53631 * 87.95351 * 138.65093 * 4 3 2 6 6 C 1.47484 * 110.99990 * 190.00144 * 3 2 1 7 7 H 1.09001 * 113.47545 * 336.12278 * 6 3 2 8 8 C 1.53002 * 113.47351 * 106.53002 * 6 3 2 9 9 N 1.46901 * 109.47317 * 303.89039 * 8 6 3 10 10 C 1.46896 * 110.99913 * 180.02562 * 9 8 6 11 11 H 1.09002 * 109.47220 * 325.00418 * 10 9 8 12 12 C 1.52997 * 109.46848 * 85.00348 * 10 9 8 13 13 C 1.50701 * 109.47239 * 205.00362 * 10 9 8 14 14 H 1.07999 * 119.99742 * 0.02562 * 13 10 9 15 15 C 1.37875 * 120.00221 * 180.02562 * 13 10 9 16 16 N 1.31519 * 119.99615 * 359.97438 * 15 13 10 17 17 Si 1.86792 * 119.99983 * 179.97438 * 15 13 10 18 18 H 1.48494 * 109.47366 * 359.97438 * 17 15 13 19 19 H 1.48506 * 109.47271 * 119.99753 * 17 15 13 20 20 H 1.48496 * 109.47166 * 239.99582 * 17 15 13 21 21 H 1.09004 * 109.47175 * 59.99884 * 1 2 3 22 22 H 1.09002 * 109.47365 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47036 * 299.99980 * 1 2 3 24 24 H 1.09006 * 109.46984 * 240.00273 * 2 1 3 25 25 H 1.08997 * 109.47420 * 120.00409 * 2 1 3 26 26 H 1.09003 * 113.47594 * 253.47149 * 4 3 2 27 27 H 1.09010 * 113.47515 * 23.93897 * 4 3 2 28 28 H 1.08996 * 114.20435 * 220.39312 * 5 4 3 29 29 H 1.08999 * 114.16946 * 87.65008 * 5 4 3 30 30 H 1.09007 * 109.46416 * 183.89197 * 8 6 3 31 31 H 1.08990 * 109.47033 * 63.89895 * 8 6 3 32 32 H 1.00902 * 110.99781 * 56.05007 * 9 8 6 33 33 H 1.08996 * 109.47853 * 300.00000 * 12 10 9 34 34 H 1.09002 * 109.47153 * 60.00028 * 12 10 9 35 35 H 1.08998 * 109.47533 * 179.97438 * 12 10 9 36 36 H 0.96997 * 119.99545 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.2871 1.8510 1.3734 5 6 3.5624 2.5205 0.8390 6 6 3.4743 1.4312 -0.2391 7 1 3.9885 0.5092 0.0321 8 6 3.8465 1.9267 -1.6380 9 7 3.1870 1.0866 -2.6467 10 6 3.5227 1.5335 -4.0051 11 1 3.6187 2.6192 -4.0171 12 6 4.8462 0.8997 -4.4380 13 6 2.4307 1.1153 -4.9558 14 1 1.5730 0.5722 -4.5875 15 6 2.5268 1.4259 -6.2957 16 7 3.5712 2.0878 -6.7439 17 14 1.1736 0.9069 -7.4741 18 1 0.1172 0.1799 -6.7254 19 1 0.5869 2.1109 -8.1155 20 1 1.7412 0.0167 -8.5184 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 1.5462 2.5597 1.7434 27 1 2.4847 1.0413 2.0760 28 1 4.4257 2.4274 1.4979 29 1 3.4115 3.5328 0.4640 30 1 4.9273 1.8696 -1.7680 31 1 3.5205 2.9600 -1.7562 32 1 2.1877 1.0715 -2.5072 33 1 5.6360 1.2021 -3.7504 34 1 4.7502 -0.1860 -4.4260 35 1 5.0952 1.2309 -5.4461 36 1 3.6385 2.3066 -7.6865 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712556889.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:20 Heat of formation + Delta-G solvation = 28.380811 kcal Electronic energy + Delta-G solvation = -14625.062821 eV Core-core repulsion = 12337.980580 eV Total energy + Delta-G solvation = -2287.082241 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.02752 -35.53834 -32.77967 -32.23063 -29.18954 -27.12108 -26.08821 -25.02496 -22.31950 -21.66085 -19.63998 -19.38850 -16.57582 -15.99669 -15.29444 -14.62811 -14.51660 -14.01998 -13.53860 -13.07728 -12.71250 -12.46159 -12.14400 -11.94279 -11.53040 -11.35229 -11.10595 -11.00425 -10.80535 -10.55541 -10.42779 -10.28071 -10.17513 -10.05494 -9.60212 -8.78948 -8.61268 -8.41445 -7.13351 -5.97019 -4.02550 3.32064 3.39556 3.44372 4.15586 4.44960 4.61879 4.89795 5.16064 5.32921 5.34914 5.39332 5.56837 5.60931 5.72315 5.78859 5.87111 5.92527 5.97716 6.08154 6.23031 6.38517 6.44273 6.54779 6.70389 6.94945 7.20646 7.30752 7.34532 7.58974 7.85129 7.98955 8.35325 8.51494 8.79740 9.10232 9.63084 11.09536 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.035199 B = 0.007834 C = 0.006774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.286853 B = 3573.090743 C = 4132.683069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.014 3.986 3 N -0.464 5.464 4 C -0.004 4.004 5 C -0.145 4.145 6 C 0.035 3.965 7 H 0.076 0.924 8 C 0.078 3.922 9 N -0.688 5.688 10 C 0.211 3.789 11 H -0.001 1.001 12 C -0.124 4.124 13 C -0.513 4.513 14 H 0.059 0.941 15 C 0.060 3.940 16 N -0.891 5.891 17 Si 0.895 3.105 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.284 1.284 21 H 0.064 0.936 22 H 0.053 0.947 23 H 0.046 0.954 24 H 0.087 0.913 25 H 0.035 0.965 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.024 0.976 32 H 0.337 0.663 33 H 0.003 0.997 34 H 0.030 0.970 35 H 0.079 0.921 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.442 -1.290 13.889 14.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.115 4.115 3 N -0.187 5.187 4 C -0.133 4.133 5 C -0.183 4.183 6 C -0.074 4.074 7 H 0.094 0.906 8 C -0.053 4.053 9 N -0.320 5.320 10 C 0.103 3.897 11 H 0.017 0.983 12 C -0.182 4.182 13 C -0.552 4.552 14 H 0.077 0.923 15 C -0.141 4.141 16 N -0.531 5.531 17 Si 0.723 3.277 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.210 1.210 21 H 0.083 0.917 22 H 0.072 0.928 23 H 0.065 0.935 24 H 0.106 0.894 25 H 0.054 0.946 26 H 0.097 0.903 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.110 0.890 30 H 0.081 0.919 31 H 0.042 0.958 32 H 0.155 0.845 33 H 0.022 0.978 34 H 0.049 0.951 35 H 0.098 0.902 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.374 -1.383 13.266 13.409 hybrid contribution -0.691 -0.038 -0.256 0.738 sum -2.065 -1.422 13.010 13.250 Atomic orbital electron populations 1.21644 0.95051 1.00951 1.02177 1.22680 0.96618 0.90576 1.01589 1.68851 1.14664 1.19808 1.15347 1.23808 0.97630 0.99523 0.92337 1.23260 0.97462 0.99529 0.98048 1.23447 0.89662 0.97846 0.96464 0.90586 1.21787 0.98909 0.94758 0.89815 1.60696 1.14246 1.53226 1.03824 1.19086 0.94110 0.93141 0.83374 0.98312 1.21708 0.96112 0.99038 1.01334 1.21314 1.05185 1.35953 0.92713 0.92290 1.24923 0.95849 0.95108 0.98243 1.69915 1.28511 1.40039 1.14602 0.86486 0.82028 0.78232 0.80926 1.19769 1.21128 1.21041 0.91684 0.92819 0.93465 0.89423 0.94636 0.90273 0.91910 0.91050 0.89002 0.91877 0.95797 0.84548 0.97813 0.95126 0.90208 0.93084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 10.24 37.16 0.38 -1.43 16 2 C 0.01 0.20 5.27 -3.82 -0.02 0.18 16 3 N -0.46 -6.93 5.52 -236.28 -1.31 -8.23 16 4 C 0.00 -0.05 7.71 -7.48 -0.06 -0.10 16 5 C -0.14 -1.77 8.01 -26.14 -0.21 -1.98 16 6 C 0.04 0.54 3.34 -71.43 -0.24 0.30 16 7 H 0.08 1.13 7.91 -51.93 -0.41 0.72 16 8 C 0.08 1.47 5.64 -3.82 -0.02 1.45 16 9 N -0.69 -15.31 6.15 -107.95 -0.66 -15.98 16 10 C 0.21 5.54 2.60 -68.87 -0.18 5.36 16 11 H 0.00 -0.02 7.80 -51.93 -0.41 -0.43 16 12 C -0.12 -3.17 9.19 37.16 0.34 -2.83 16 13 C -0.51 -14.53 8.59 -34.44 -0.30 -14.82 16 14 H 0.06 1.66 7.62 -52.49 -0.40 1.26 16 15 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 16 N -0.89 -26.09 11.32 55.43 0.63 -25.46 16 17 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.09 1.41 7.56 -51.93 -0.39 1.01 16 25 H 0.04 0.45 7.30 -51.93 -0.38 0.07 16 26 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.67 7.42 -51.92 -0.39 0.29 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.09 1.16 7.95 -51.93 -0.41 0.75 16 30 H 0.06 1.19 7.44 -51.93 -0.39 0.80 16 31 H 0.02 0.48 7.81 -51.93 -0.41 0.07 16 32 H 0.34 7.59 7.02 -39.29 -0.28 7.32 16 33 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 36 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 286.25 15.07 4.31 4.31 Total: -1.00 -29.04 286.25 -8.67 -37.71 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -6.23 Total: 3.19 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -0.39 Total: -12.28 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: -1.34 Total: -49.67 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.04 -8.67 -37.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712556889.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.087 kcal (2) G-P(sol) polarization free energy of solvation -29.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds