Wall clock time and date at job start Mon Mar 30 2020 03:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46903 * 109.47394 * 2 1 4 4 C 1.47476 * 111.00049 * 94.02869 * 3 2 1 5 5 C 1.53631 * 87.95351 * 138.65093 * 4 3 2 6 6 C 1.47484 * 110.99990 * 190.00144 * 3 2 1 7 7 H 1.09001 * 113.47545 * 336.12278 * 6 3 2 8 8 C 1.53002 * 113.47351 * 106.53002 * 6 3 2 9 9 N 1.46901 * 109.47317 * 303.89039 * 8 6 3 10 10 C 1.46896 * 110.99913 * 180.02562 * 9 8 6 11 11 H 1.09002 * 109.47220 * 325.00418 * 10 9 8 12 12 C 1.52997 * 109.46848 * 85.00348 * 10 9 8 13 13 C 1.50701 * 109.47239 * 205.00362 * 10 9 8 14 14 H 1.07999 * 119.99742 * 0.02562 * 13 10 9 15 15 C 1.37875 * 120.00221 * 180.02562 * 13 10 9 16 16 N 1.31519 * 119.99615 * 359.97438 * 15 13 10 17 17 Si 1.86792 * 119.99983 * 179.97438 * 15 13 10 18 18 H 1.48494 * 109.47366 * 359.97438 * 17 15 13 19 19 H 1.48506 * 109.47271 * 119.99753 * 17 15 13 20 20 H 1.48496 * 109.47166 * 239.99582 * 17 15 13 21 21 H 1.09004 * 109.47175 * 59.99884 * 1 2 3 22 22 H 1.09002 * 109.47365 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47036 * 299.99980 * 1 2 3 24 24 H 1.09006 * 109.46984 * 240.00273 * 2 1 3 25 25 H 1.08997 * 109.47420 * 120.00409 * 2 1 3 26 26 H 1.09003 * 113.47594 * 253.47149 * 4 3 2 27 27 H 1.09010 * 113.47515 * 23.93897 * 4 3 2 28 28 H 1.08996 * 114.20435 * 220.39312 * 5 4 3 29 29 H 1.08999 * 114.16946 * 87.65008 * 5 4 3 30 30 H 1.09007 * 109.46416 * 183.89197 * 8 6 3 31 31 H 1.08990 * 109.47033 * 63.89895 * 8 6 3 32 32 H 1.00902 * 110.99781 * 56.05007 * 9 8 6 33 33 H 1.08996 * 109.47853 * 300.00000 * 12 10 9 34 34 H 1.09002 * 109.47153 * 60.00028 * 12 10 9 35 35 H 1.08998 * 109.47533 * 179.97438 * 12 10 9 36 36 H 0.96997 * 119.99545 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.2871 1.8510 1.3734 5 6 3.5624 2.5205 0.8390 6 6 3.4743 1.4312 -0.2391 7 1 3.9885 0.5092 0.0321 8 6 3.8465 1.9267 -1.6380 9 7 3.1870 1.0866 -2.6467 10 6 3.5227 1.5335 -4.0051 11 1 3.6187 2.6192 -4.0171 12 6 4.8462 0.8997 -4.4380 13 6 2.4307 1.1153 -4.9558 14 1 1.5730 0.5722 -4.5875 15 6 2.5268 1.4259 -6.2957 16 7 3.5712 2.0878 -6.7439 17 14 1.1736 0.9069 -7.4741 18 1 0.1172 0.1799 -6.7254 19 1 0.5869 2.1109 -8.1155 20 1 1.7412 0.0167 -8.5184 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 1.5462 2.5597 1.7434 27 1 2.4847 1.0413 2.0760 28 1 4.4257 2.4274 1.4979 29 1 3.4115 3.5328 0.4640 30 1 4.9273 1.8696 -1.7680 31 1 3.5205 2.9600 -1.7562 32 1 2.1877 1.0715 -2.5072 33 1 5.6360 1.2021 -3.7504 34 1 4.7502 -0.1860 -4.4260 35 1 5.0952 1.2309 -5.4461 36 1 3.6385 2.3066 -7.6865 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712556889.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:20 Heat of formation + Delta-G solvation = 7.792296 kcal Electronic energy + Delta-G solvation = -14625.955606 eV Core-core repulsion = 12337.980580 eV Total energy + Delta-G solvation = -2287.975026 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.14642 -37.45174 -34.51630 -33.60994 -31.03599 -28.22501 -27.71081 -27.06828 -23.64343 -22.78317 -21.66045 -20.51726 -18.59104 -17.23645 -16.89165 -16.27322 -15.89736 -15.59305 -15.04617 -14.59791 -14.42561 -13.76005 -13.46269 -13.14807 -13.07768 -12.97849 -12.89519 -12.65658 -12.30346 -12.19223 -12.13025 -12.05938 -11.68297 -11.50765 -11.06377 -10.86474 -10.58446 -9.74221 -9.00575 -8.13955 -6.28013 1.39951 1.41032 1.53621 2.40846 3.06540 3.14659 3.51102 3.70970 4.05922 4.20356 4.30799 4.32640 4.49712 4.52469 4.68500 4.72670 4.81173 4.87732 4.93013 4.93853 5.01216 5.07544 5.17740 5.22944 5.24724 5.39256 5.47179 5.58710 5.67417 5.87498 6.21823 6.27087 6.50668 6.80509 7.02728 7.42377 8.92121 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.035199 B = 0.007834 C = 0.006774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.286853 B = 3573.090743 C = 4132.683069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.015 3.985 3 N -0.490 5.490 4 C 0.004 3.996 5 C -0.133 4.133 6 C 0.035 3.965 7 H 0.083 0.917 8 C 0.078 3.922 9 N -0.682 5.682 10 C 0.214 3.786 11 H -0.036 1.036 12 C -0.111 4.111 13 C -0.535 4.535 14 H 0.055 0.945 15 C 0.012 3.988 16 N -0.919 5.919 17 Si 0.963 3.037 18 H -0.267 1.267 19 H -0.279 1.279 20 H -0.278 1.278 21 H 0.042 0.958 22 H 0.067 0.933 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.009 0.991 32 H 0.334 0.666 33 H 0.022 0.978 34 H 0.027 0.973 35 H 0.056 0.944 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.025 -1.866 15.262 15.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.113 4.113 3 N -0.214 5.214 4 C -0.124 4.124 5 C -0.171 4.171 6 C -0.075 4.075 7 H 0.101 0.899 8 C -0.052 4.052 9 N -0.313 5.313 10 C 0.105 3.895 11 H -0.019 1.019 12 C -0.170 4.170 13 C -0.574 4.574 14 H 0.073 0.927 15 C -0.187 4.187 16 N -0.558 5.558 17 Si 0.788 3.212 18 H -0.192 1.192 19 H -0.205 1.205 20 H -0.203 1.203 21 H 0.061 0.939 22 H 0.086 0.914 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.106 0.894 27 H 0.101 0.899 28 H 0.115 0.885 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.027 0.973 32 H 0.151 0.849 33 H 0.041 0.959 34 H 0.046 0.954 35 H 0.075 0.925 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.955 -1.960 14.662 14.921 hybrid contribution -0.485 0.168 -0.650 0.828 sum -2.440 -1.792 14.013 14.336 Atomic orbital electron populations 1.21603 0.94313 1.01751 1.01658 1.22651 0.97222 0.90225 1.01206 1.68840 1.14306 1.20455 1.17786 1.23843 0.97483 1.00019 0.91095 1.23220 0.98815 0.98114 0.96927 1.23407 0.90315 0.99259 0.94522 0.89918 1.21865 0.98402 0.93619 0.91323 1.60635 1.14224 1.53681 1.02714 1.18919 0.94141 0.90961 0.85447 1.01885 1.21521 0.96439 0.98566 1.00429 1.21597 1.05721 1.36370 0.93666 0.92695 1.25751 0.98148 0.94948 0.99875 1.70036 1.30077 1.40580 1.15128 0.85431 0.79161 0.78001 0.78580 1.19174 1.20528 1.20324 0.93855 0.91405 0.92228 0.92024 0.92692 0.89417 0.89919 0.88450 0.89718 0.92053 0.97278 0.84866 0.95904 0.95355 0.92503 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 10.24 71.98 0.74 -2.56 16 2 C 0.02 0.41 5.27 86.30 0.45 0.87 16 3 N -0.49 -13.94 5.52 -901.47 -4.98 -18.92 16 4 C 0.00 0.09 7.71 83.62 0.64 0.73 16 5 C -0.13 -2.92 8.01 30.98 0.25 -2.67 16 6 C 0.03 1.00 3.34 42.19 0.14 1.14 16 7 H 0.08 2.29 7.91 -2.39 -0.02 2.27 16 8 C 0.08 2.95 5.64 86.30 0.49 3.44 16 9 N -0.68 -30.78 6.15 -495.46 -3.05 -33.83 16 10 C 0.21 11.53 2.60 44.17 0.11 11.64 16 11 H -0.04 -2.18 7.80 -2.39 -0.02 -2.20 16 12 C -0.11 -5.78 9.19 71.98 0.66 -5.12 16 13 C -0.54 -30.80 8.59 25.60 0.22 -30.58 16 14 H 0.05 3.13 7.62 -2.91 -0.02 3.11 16 15 C 0.01 0.67 5.30 84.65 0.45 1.12 16 16 N -0.92 -54.48 11.32 21.45 0.24 -54.23 16 17 Si 0.96 44.76 29.54 68.60 2.03 46.78 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 22 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 24 H 0.06 1.95 7.56 -2.38 -0.02 1.93 16 25 H 0.05 1.23 7.30 -2.39 -0.02 1.22 16 26 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.08 1.44 7.42 -2.38 -0.02 1.42 16 28 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.08 2.00 7.95 -2.39 -0.02 1.98 16 30 H 0.06 2.30 7.44 -2.38 -0.02 2.29 16 31 H 0.01 0.37 7.81 -2.39 -0.02 0.35 16 32 H 0.33 15.37 7.02 -89.69 -0.63 14.74 16 33 H 0.02 1.04 7.45 -2.39 -0.02 1.03 16 34 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.06 3.21 6.07 -2.39 -0.01 3.20 16 36 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -62.33 286.25 -1.20 -63.53 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.40 Total: 18.66 kcal Atomic # 6 Polarization: -26.15 SS G_CDS: 4.16 Total: -21.99 kcal Atomic # 7 Polarization: -99.20 SS G_CDS: -7.78 Total: -106.98 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -62.33 -1.20 -63.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712556889.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.321 kcal (2) G-P(sol) polarization free energy of solvation -62.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds