Wall clock time and date at job start Mon Mar 30 2020 03:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46904 * 109.47064 * 2 1 4 4 C 1.48187 * 111.07571 * 269.29417 * 3 2 1 5 5 C 1.53939 * 86.22165 * 222.53734 * 4 3 2 6 6 C 1.47961 * 110.99883 * 169.99845 * 3 2 1 7 7 H 1.08994 * 113.75921 * 23.16372 * 6 3 2 8 8 C 1.53000 * 113.75916 * 251.89993 * 6 3 2 9 9 N 1.46894 * 109.46850 * 56.98494 * 8 6 3 10 10 C 1.46898 * 110.99985 * 179.97438 * 9 8 6 11 11 H 1.09003 * 109.47185 * 34.99869 * 10 9 8 12 12 C 1.53003 * 109.47269 * 274.99971 * 10 9 8 13 13 C 1.50704 * 109.47293 * 154.99820 * 10 9 8 14 14 H 1.07997 * 120.00051 * 34.00813 * 13 10 9 15 15 C 1.37876 * 119.99866 * 214.28302 * 13 10 9 16 16 N 1.31517 * 119.99997 * 181.85529 * 15 13 10 17 17 Si 1.86803 * 120.00176 * 1.85304 * 15 13 10 18 18 H 1.48499 * 109.47305 * 85.07926 * 17 15 13 19 19 H 1.48500 * 109.47119 * 205.08224 * 17 15 13 20 20 H 1.48499 * 109.46848 * 325.07762 * 17 15 13 21 21 H 1.08997 * 109.47193 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47054 * 299.99906 * 1 2 3 23 23 H 1.09006 * 109.47340 * 59.99549 * 1 2 3 24 24 H 1.09002 * 109.46939 * 240.00827 * 2 1 3 25 25 H 1.09000 * 109.47253 * 120.00058 * 2 1 3 26 26 H 1.08992 * 113.82693 * 108.19143 * 4 3 2 27 27 H 1.09001 * 113.75713 * 336.86812 * 4 3 2 28 28 H 1.08999 * 113.73476 * 269.27314 * 5 4 3 29 29 H 1.08996 * 113.83231 * 138.00005 * 5 4 3 30 30 H 1.08997 * 109.47602 * 296.98062 * 8 6 3 31 31 H 1.08999 * 109.46681 * 176.98310 * 8 6 3 32 32 H 1.00895 * 111.00482 * 56.04490 * 9 8 6 33 33 H 1.08996 * 109.47380 * 184.49997 * 12 10 9 34 34 H 1.09003 * 109.46876 * 304.49847 * 12 10 9 35 35 H 1.08994 * 109.47231 * 64.49801 * 12 10 9 36 36 H 0.97003 * 120.00026 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 2.2133 1.8818 -1.3826 5 6 3.5264 2.4990 -0.8682 6 6 3.4789 1.4315 0.2399 7 1 3.9960 0.5074 -0.0183 8 6 3.8596 1.9620 1.6236 9 7 3.2156 1.1405 2.6571 10 6 3.5597 1.6212 4.0019 11 1 3.6472 2.7076 3.9880 12 6 4.8919 1.0077 4.4374 13 6 2.4794 1.2166 4.9717 14 1 1.9564 0.2812 4.8381 15 6 2.1550 2.0433 6.0263 16 7 1.2378 1.6738 6.8935 17 14 3.0180 3.6883 6.2236 18 1 2.3284 4.7113 5.3971 19 1 2.9821 4.0981 7.6504 20 1 4.4296 3.5628 5.7800 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5137 -0.8901 25 1 1.8933 -0.5138 0.8900 26 1 1.4734 2.6193 -1.6932 27 1 2.3587 1.0899 -2.1174 28 1 3.4169 3.5189 -0.4997 29 1 4.3658 2.3828 -1.5536 30 1 3.5265 2.9953 1.7209 31 1 4.9418 1.9162 1.7451 32 1 3.4579 0.1671 2.5484 33 1 5.1081 1.3004 5.4648 34 1 4.8294 -0.0787 4.3746 35 1 5.6873 1.3643 3.7830 36 1 1.0098 2.2552 7.6357 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712556890.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:23 Heat of formation + Delta-G solvation = 30.281662 kcal Electronic energy + Delta-G solvation = -14654.697451 eV Core-core repulsion = 12367.697637 eV Total energy + Delta-G solvation = -2286.999814 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.76684 -35.90494 -32.65133 -32.12514 -29.90994 -26.94867 -26.25997 -25.10031 -22.41899 -21.56754 -20.01785 -19.30397 -16.88696 -15.97417 -15.35069 -14.85845 -14.34462 -13.78681 -13.57740 -13.20493 -12.92656 -12.35444 -12.23496 -12.16725 -11.92614 -11.60931 -11.18188 -11.06084 -10.88692 -10.78572 -10.56451 -10.44539 -10.33432 -9.89506 -9.65055 -9.04327 -8.48775 -8.39825 -7.19996 -5.97093 -3.93376 3.34808 3.41951 3.42481 4.07192 4.49566 4.63174 4.84122 5.12945 5.28648 5.37398 5.39784 5.49879 5.65551 5.71022 5.73618 5.83713 5.88490 6.03154 6.06236 6.17847 6.25764 6.31795 6.39863 6.47890 6.61004 6.66364 6.75518 6.90558 7.18728 7.41282 7.80034 8.08228 8.48097 8.77114 9.10958 9.66166 11.16840 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.032827 B = 0.008446 C = 0.007707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.753530 B = 3314.237062 C = 3632.353793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.023 3.977 3 N -0.448 5.448 4 C -0.006 4.006 5 C -0.141 4.141 6 C 0.036 3.964 7 H 0.068 0.932 8 C 0.076 3.924 9 N -0.661 5.661 10 C 0.181 3.819 11 H 0.035 0.965 12 C -0.171 4.171 13 C -0.486 4.486 14 H 0.075 0.925 15 C 0.068 3.932 16 N -0.903 5.903 17 Si 0.876 3.124 18 H -0.276 1.276 19 H -0.290 1.290 20 H -0.269 1.269 21 H 0.050 0.950 22 H 0.069 0.931 23 H 0.044 0.956 24 H 0.028 0.972 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.061 0.939 28 H 0.090 0.910 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.018 0.982 32 H 0.320 0.680 33 H 0.051 0.949 34 H 0.044 0.956 35 H 0.018 0.982 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.829 -0.343 -15.170 15.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.105 4.105 3 N -0.171 5.171 4 C -0.135 4.135 5 C -0.180 4.180 6 C -0.074 4.074 7 H 0.086 0.914 8 C -0.054 4.054 9 N -0.290 5.290 10 C 0.072 3.928 11 H 0.053 0.947 12 C -0.230 4.230 13 C -0.524 4.524 14 H 0.093 0.907 15 C -0.133 4.133 16 N -0.542 5.542 17 Si 0.704 3.296 18 H -0.202 1.202 19 H -0.217 1.217 20 H -0.194 1.194 21 H 0.069 0.931 22 H 0.088 0.912 23 H 0.063 0.937 24 H 0.046 0.954 25 H 0.099 0.901 26 H 0.102 0.898 27 H 0.079 0.921 28 H 0.109 0.891 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.036 0.964 32 H 0.137 0.863 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.037 0.963 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.659 0.382 -14.562 15.020 hybrid contribution 1.828 0.024 -0.238 1.843 sum 5.487 0.406 -14.800 15.790 Atomic orbital electron populations 1.21622 0.94974 1.00771 1.02356 1.22549 0.96876 0.90620 1.00480 1.68592 1.13763 1.19347 1.15426 1.23976 0.97560 0.99602 0.92355 1.23388 0.97181 0.99937 0.97473 1.23465 0.90440 0.97516 0.96004 0.91367 1.21855 0.94792 0.98783 0.89998 1.60832 1.60924 1.04680 1.02569 1.19635 0.92145 0.94820 0.86192 0.94743 1.22680 0.99161 1.00575 1.00632 1.20858 1.17774 1.06805 1.07003 0.90719 1.24968 0.94789 0.97700 0.95836 1.69894 1.31990 1.37527 1.14830 0.86906 0.80553 0.85240 0.76932 1.20201 1.21675 1.19391 0.93069 0.91201 0.93666 0.95368 0.90094 0.89846 0.92069 0.89129 0.91614 0.91232 0.96373 0.86297 0.93019 0.93673 0.96289 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 10.22 37.16 0.38 -1.57 16 2 C 0.02 0.34 5.52 -3.82 -0.02 0.32 16 3 N -0.45 -6.91 5.87 -229.70 -1.35 -8.26 16 4 C -0.01 -0.07 7.97 -2.64 -0.02 -0.09 16 5 C -0.14 -1.69 7.84 -25.78 -0.20 -1.90 16 6 C 0.04 0.51 3.49 -66.65 -0.23 0.28 16 7 H 0.07 0.91 7.92 -51.93 -0.41 0.50 16 8 C 0.08 1.33 5.63 -3.83 -0.02 1.31 16 9 N -0.66 -13.80 6.14 -107.95 -0.66 -14.46 16 10 C 0.18 4.32 2.17 -68.86 -0.15 4.17 16 11 H 0.03 0.86 5.13 -51.93 -0.27 0.59 16 12 C -0.17 -3.65 9.12 37.16 0.34 -3.31 16 13 C -0.49 -13.93 9.20 -34.44 -0.32 -14.24 16 14 H 0.07 2.35 8.06 -52.49 -0.42 1.92 16 15 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 16 N -0.90 -28.21 13.96 55.43 0.77 -27.44 16 17 Si 0.88 22.12 26.71 -169.99 -4.54 17.58 16 18 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 20 H -0.27 -6.46 6.87 56.52 0.39 -6.07 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.03 0.36 7.38 -51.93 -0.38 -0.03 16 25 H 0.08 1.29 8.00 -51.93 -0.42 0.88 16 26 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.06 0.66 7.48 -51.93 -0.39 0.27 16 28 H 0.09 1.12 7.92 -51.93 -0.41 0.71 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 1.30 7.79 -51.93 -0.40 0.90 16 31 H 0.02 0.30 7.52 -51.93 -0.39 -0.09 16 32 H 0.32 6.28 8.34 -39.29 -0.33 5.96 16 33 H 0.05 1.15 7.90 -51.93 -0.41 0.74 16 34 H 0.04 0.92 8.05 -51.93 -0.42 0.50 16 35 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 36 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 288.49 15.07 4.35 4.35 Total: -1.00 -30.76 288.49 -8.08 -38.85 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -6.31 Total: 2.53 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -0.34 Total: -13.14 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: -1.24 Total: -50.16 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.54 Total: 17.58 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.76 -8.08 -38.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712556890.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.127 kcal (2) G-P(sol) polarization free energy of solvation -30.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds