Wall clock time and date at job start Mon Mar 30 2020 03:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46904 * 109.47064 * 2 1 4 4 C 1.48187 * 111.07571 * 269.29417 * 3 2 1 5 5 C 1.53939 * 86.22165 * 222.53734 * 4 3 2 6 6 C 1.47961 * 110.99883 * 169.99845 * 3 2 1 7 7 H 1.08994 * 113.75921 * 23.16372 * 6 3 2 8 8 C 1.53000 * 113.75916 * 251.89993 * 6 3 2 9 9 N 1.46894 * 109.46850 * 56.98494 * 8 6 3 10 10 C 1.46898 * 110.99985 * 179.97438 * 9 8 6 11 11 H 1.09003 * 109.47185 * 34.99869 * 10 9 8 12 12 C 1.53003 * 109.47269 * 274.99971 * 10 9 8 13 13 C 1.50704 * 109.47293 * 154.99820 * 10 9 8 14 14 H 1.07997 * 120.00051 * 34.00813 * 13 10 9 15 15 C 1.37876 * 119.99866 * 214.28302 * 13 10 9 16 16 N 1.31517 * 119.99997 * 181.85529 * 15 13 10 17 17 Si 1.86803 * 120.00176 * 1.85304 * 15 13 10 18 18 H 1.48499 * 109.47305 * 85.07926 * 17 15 13 19 19 H 1.48500 * 109.47119 * 205.08224 * 17 15 13 20 20 H 1.48499 * 109.46848 * 325.07762 * 17 15 13 21 21 H 1.08997 * 109.47193 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47054 * 299.99906 * 1 2 3 23 23 H 1.09006 * 109.47340 * 59.99549 * 1 2 3 24 24 H 1.09002 * 109.46939 * 240.00827 * 2 1 3 25 25 H 1.09000 * 109.47253 * 120.00058 * 2 1 3 26 26 H 1.08992 * 113.82693 * 108.19143 * 4 3 2 27 27 H 1.09001 * 113.75713 * 336.86812 * 4 3 2 28 28 H 1.08999 * 113.73476 * 269.27314 * 5 4 3 29 29 H 1.08996 * 113.83231 * 138.00005 * 5 4 3 30 30 H 1.08997 * 109.47602 * 296.98062 * 8 6 3 31 31 H 1.08999 * 109.46681 * 176.98310 * 8 6 3 32 32 H 1.00895 * 111.00482 * 56.04490 * 9 8 6 33 33 H 1.08996 * 109.47380 * 184.49997 * 12 10 9 34 34 H 1.09003 * 109.46876 * 304.49847 * 12 10 9 35 35 H 1.08994 * 109.47231 * 64.49801 * 12 10 9 36 36 H 0.97003 * 120.00026 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 2.2133 1.8818 -1.3826 5 6 3.5264 2.4990 -0.8682 6 6 3.4789 1.4315 0.2399 7 1 3.9960 0.5074 -0.0183 8 6 3.8596 1.9620 1.6236 9 7 3.2156 1.1405 2.6571 10 6 3.5597 1.6212 4.0019 11 1 3.6472 2.7076 3.9880 12 6 4.8919 1.0077 4.4374 13 6 2.4794 1.2166 4.9717 14 1 1.9564 0.2812 4.8381 15 6 2.1550 2.0433 6.0263 16 7 1.2378 1.6738 6.8935 17 14 3.0180 3.6883 6.2236 18 1 2.3284 4.7113 5.3971 19 1 2.9821 4.0981 7.6504 20 1 4.4296 3.5628 5.7800 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5137 -0.8901 25 1 1.8933 -0.5138 0.8900 26 1 1.4734 2.6193 -1.6932 27 1 2.3587 1.0899 -2.1174 28 1 3.4169 3.5189 -0.4997 29 1 4.3658 2.3828 -1.5536 30 1 3.5265 2.9953 1.7209 31 1 4.9418 1.9162 1.7451 32 1 3.4579 0.1671 2.5484 33 1 5.1081 1.3004 5.4648 34 1 4.8294 -0.0787 4.3746 35 1 5.6873 1.3643 3.7830 36 1 1.0098 2.2552 7.6357 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712556890.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:22 Heat of formation + Delta-G solvation = 6.639152 kcal Electronic energy + Delta-G solvation = -14655.722668 eV Core-core repulsion = 12367.697637 eV Total energy + Delta-G solvation = -2288.025030 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.84824 -37.64142 -34.47118 -33.55697 -31.57990 -28.05315 -27.60148 -27.17806 -23.65409 -22.70930 -21.86103 -20.45308 -18.99917 -17.05993 -16.82286 -16.24615 -16.07497 -15.30878 -15.02858 -14.62590 -14.44875 -14.10233 -13.78562 -13.42195 -13.19008 -12.98040 -12.89738 -12.67061 -12.38911 -12.20648 -12.02336 -11.79324 -11.65998 -11.43530 -11.31369 -11.06187 -10.69297 -9.48780 -8.83709 -8.23692 -6.24683 1.34117 1.36129 1.45478 2.36854 2.97332 3.11524 3.57957 3.75667 3.99762 4.19980 4.35080 4.38495 4.42673 4.48085 4.55306 4.64963 4.69652 4.75887 4.82360 4.86132 4.96297 5.00407 5.00900 5.08926 5.19730 5.29541 5.43756 5.44929 5.67944 5.73307 6.12251 6.35819 6.74012 6.80926 6.87098 7.38954 8.94149 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.032827 B = 0.008446 C = 0.007707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.753530 B = 3314.237062 C = 3632.353793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.025 3.975 3 N -0.486 5.486 4 C 0.000 4.000 5 C -0.129 4.129 6 C 0.034 3.966 7 H 0.083 0.917 8 C 0.078 3.922 9 N -0.676 5.676 10 C 0.184 3.816 11 H 0.030 0.970 12 C -0.163 4.163 13 C -0.490 4.490 14 H 0.028 0.972 15 C 0.005 3.995 16 N -0.954 5.954 17 Si 0.944 3.056 18 H -0.274 1.274 19 H -0.287 1.287 20 H -0.244 1.244 21 H 0.064 0.936 22 H 0.035 0.965 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.053 0.947 31 H 0.035 0.965 32 H 0.327 0.673 33 H 0.040 0.960 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.830 0.516 -17.371 18.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.104 4.104 3 N -0.210 5.210 4 C -0.128 4.128 5 C -0.167 4.167 6 C -0.076 4.076 7 H 0.101 0.899 8 C -0.052 4.052 9 N -0.305 5.305 10 C 0.074 3.926 11 H 0.048 0.952 12 C -0.222 4.222 13 C -0.529 4.529 14 H 0.047 0.953 15 C -0.191 4.191 16 N -0.596 5.596 17 Si 0.768 3.232 18 H -0.199 1.199 19 H -0.213 1.213 20 H -0.168 1.168 21 H 0.083 0.917 22 H 0.054 0.946 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.104 0.896 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.144 0.856 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.679 1.232 -16.795 17.772 hybrid contribution 1.138 -0.338 0.385 1.248 sum 6.817 0.894 -16.410 17.792 Atomic orbital electron populations 1.21580 0.95116 1.01378 1.01232 1.22512 0.96770 0.90624 1.00462 1.68568 1.14508 1.19836 1.18055 1.24022 0.97682 1.00009 0.91123 1.23316 0.98091 0.98664 0.96605 1.23471 0.90220 0.99052 0.94820 0.89884 1.21899 0.95406 0.97356 0.90568 1.60573 1.62356 1.05539 1.02052 1.19452 0.91696 0.94607 0.86810 0.95209 1.22503 0.98418 1.00762 1.00553 1.21165 1.18455 1.05040 1.08223 0.95339 1.25867 0.95739 1.01951 0.95524 1.70059 1.34296 1.39330 1.15884 0.85810 0.80518 0.79858 0.77008 1.19943 1.21289 1.16784 0.91669 0.94618 0.92335 0.92948 0.92383 0.89637 0.90058 0.89783 0.88817 0.92845 0.94697 0.85594 0.94116 0.93280 0.93002 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 10.22 71.98 0.74 -2.99 16 2 C 0.02 0.69 5.52 86.30 0.48 1.17 16 3 N -0.49 -14.19 5.87 -880.63 -5.17 -19.36 16 4 C 0.00 0.00 7.97 86.36 0.69 0.69 16 5 C -0.13 -2.64 7.84 31.24 0.25 -2.39 16 6 C 0.03 0.90 3.49 45.02 0.16 1.05 16 7 H 0.08 1.95 7.92 -2.39 -0.02 1.93 16 8 C 0.08 2.55 5.63 86.30 0.49 3.04 16 9 N -0.68 -27.81 6.14 -495.46 -3.04 -30.85 16 10 C 0.18 8.66 2.17 44.17 0.10 8.75 16 11 H 0.03 1.44 5.13 -2.39 -0.01 1.42 16 12 C -0.16 -6.63 9.12 71.98 0.66 -5.97 16 13 C -0.49 -28.85 9.20 25.60 0.24 -28.62 16 14 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 15 C 0.01 0.32 5.47 84.65 0.46 0.78 16 16 N -0.95 -61.61 13.96 21.45 0.30 -61.31 16 17 Si 0.94 45.74 26.71 68.60 1.83 47.57 16 18 H -0.27 -13.08 7.11 99.48 0.71 -12.38 16 19 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 20 H -0.24 -10.78 6.87 99.48 0.68 -10.09 16 21 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 22 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 24 H 0.05 1.18 7.38 -2.39 -0.02 1.16 16 25 H 0.06 1.84 8.00 -2.39 -0.02 1.83 16 26 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.08 1.41 7.48 -2.39 -0.02 1.39 16 28 H 0.08 1.85 7.92 -2.39 -0.02 1.83 16 29 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.05 1.92 7.79 -2.39 -0.02 1.90 16 31 H 0.04 1.04 7.52 -2.39 -0.02 1.02 16 32 H 0.33 12.67 8.34 -89.70 -0.75 11.92 16 33 H 0.04 1.72 7.90 -2.39 -0.02 1.70 16 34 H 0.05 1.92 8.05 -2.39 -0.02 1.90 16 35 H 0.05 1.77 7.57 -2.39 -0.02 1.75 16 36 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -68.19 288.49 -1.58 -69.78 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.26 Total: 18.67 kcal Atomic # 6 Polarization: -28.74 SS G_CDS: 4.24 Total: -24.50 kcal Atomic # 7 Polarization: -103.61 SS G_CDS: -7.92 Total: -111.53 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.83 Total: 47.57 kcal Total: -68.19 -1.58 -69.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712556890.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.415 kcal (2) G-P(sol) polarization free energy of solvation -68.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds