Wall clock time and date at job start Mon Mar 30 2020 03:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47507 * 2 1 4 4 C 1.53004 * 109.47199 * 239.99658 * 2 1 3 5 5 N 1.46899 * 109.47066 * 185.00074 * 4 2 1 6 6 C 1.46897 * 110.99754 * 170.00575 * 5 4 2 7 7 C 1.46899 * 111.00092 * 293.95716 * 5 4 2 8 8 N 1.46504 * 109.46979 * 120.00100 * 2 1 3 9 9 C 1.36934 * 120.00022 * 244.05544 * 8 2 1 10 10 H 1.08001 * 120.00085 * 210.55112 * 9 8 2 11 11 C 1.38817 * 119.99833 * 30.55526 * 9 8 2 12 12 N 1.31624 * 119.99872 * 15.89454 * 11 9 8 13 13 Si 1.86802 * 119.99931 * 195.90240 * 11 9 8 14 14 H 1.48501 * 109.47235 * 89.99684 * 13 11 9 15 15 H 1.48497 * 109.46801 * 209.99651 * 13 11 9 16 16 H 1.48503 * 109.46958 * 329.99460 * 13 11 9 17 17 C 1.46506 * 120.00202 * 64.05898 * 8 2 1 18 18 C 1.52991 * 117.51869 * 176.76485 * 17 8 2 19 19 C 1.52995 * 117.49742 * 245.39800 * 17 8 2 20 20 H 1.09002 * 109.47036 * 60.00359 * 1 2 3 21 21 H 1.09000 * 109.47008 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46925 * 299.99591 * 1 2 3 23 23 H 1.09006 * 109.47238 * 305.00386 * 4 2 1 24 24 H 1.08994 * 109.46633 * 65.00190 * 4 2 1 25 25 H 1.09001 * 109.47848 * 59.99593 * 6 5 4 26 26 H 1.09003 * 109.47257 * 180.02562 * 6 5 4 27 27 H 1.09005 * 109.47365 * 299.99758 * 6 5 4 28 28 H 1.08993 * 109.47322 * 59.99910 * 7 5 4 29 29 H 1.09000 * 109.47340 * 180.02562 * 7 5 4 30 30 H 1.09005 * 109.46931 * 300.00327 * 7 5 4 31 31 H 0.96996 * 119.99169 * 184.56410 * 12 11 9 32 32 H 1.08999 * 115.54556 * 31.06356 * 17 8 2 33 33 H 1.09000 * 117.50183 * 214.96760 * 18 17 8 34 34 H 1.09000 * 117.50025 * 359.97438 * 18 17 8 35 35 H 1.09001 * 117.49984 * 359.96784 * 19 17 8 36 36 H 1.09003 * 117.50085 * 144.99431 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5041 -0.8267 -1.1903 6 6 4.0107 -1.7144 -2.2454 7 6 4.1311 0.4992 -1.2719 8 7 2.0183 -0.6907 1.1962 9 6 2.7357 -0.0035 2.1387 10 1 3.4880 -0.5132 2.7223 11 6 2.4958 1.3483 2.3440 12 7 1.3947 1.8994 1.8789 13 14 3.7358 2.3852 3.2803 14 1 4.7208 2.9587 2.3283 15 1 3.0296 3.4854 3.9846 16 1 4.4428 1.5358 4.2723 17 6 1.7392 -2.1166 1.3841 18 6 2.3399 -2.7982 2.6150 19 6 0.8381 -2.5116 2.5557 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.6054 -1.7199 -1.2951 24 1 1.7517 -0.1584 -2.1369 25 1 3.7278 -1.3182 -3.2207 26 1 5.0970 -1.7750 -2.1787 27 1 3.5834 -2.7093 -2.1196 28 1 3.7911 1.1137 -0.4384 29 1 5.2148 0.3921 -1.2265 30 1 3.8524 0.9757 -2.2119 31 1 1.2578 2.8559 1.9641 32 1 1.6630 -2.7050 0.4698 33 1 2.6588 -3.8353 2.5107 34 1 2.9433 -2.1860 3.2852 35 1 0.4533 -1.7107 3.1870 36 1 0.1690 -3.3601 2.4123 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714003593.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:07 Heat of formation + Delta-G solvation = 58.904878 kcal Electronic energy + Delta-G solvation = -15478.971023 eV Core-core repulsion = 13193.212405 eV Total energy + Delta-G solvation = -2285.758618 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -37.78740 -36.06924 -33.53415 -31.40641 -28.68828 -26.98315 -25.93466 -24.00413 -21.69345 -21.25638 -20.55351 -18.80136 -16.17686 -15.29279 -14.90117 -14.59892 -14.13372 -13.91698 -13.61158 -12.84036 -12.08969 -11.92992 -11.79049 -11.70757 -11.27710 -11.04905 -10.94770 -10.81842 -10.70892 -10.60795 -10.33444 -9.99584 -9.67699 -9.41078 -9.25160 -9.10102 -8.29569 -7.53258 -6.40655 -5.68357 -3.13239 3.41626 3.49757 3.50957 4.54737 4.69423 5.09282 5.39604 5.49254 5.64493 5.74894 5.89703 6.01962 6.06783 6.16972 6.20877 6.25043 6.30016 6.42705 6.54043 6.61519 6.68429 6.75458 6.78434 6.92017 6.98007 7.20246 7.31222 7.60244 7.65889 7.85104 7.90284 7.97549 8.59700 9.34168 9.97176 10.51382 11.35622 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.021534 B = 0.015069 C = 0.012019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.961116 B = 1857.613440 C = 2329.122329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.194 3.806 3 H 0.099 0.901 4 C 0.038 3.962 5 N -0.519 5.519 6 C 0.027 3.973 7 C 0.031 3.969 8 N -0.534 5.534 9 C -0.229 4.229 10 H 0.066 0.934 11 C 0.000 4.000 12 N -0.900 5.900 13 Si 0.894 3.106 14 H -0.289 1.289 15 H -0.294 1.294 16 H -0.280 1.280 17 C 0.142 3.858 18 C -0.198 4.198 19 C -0.230 4.230 20 H 0.024 0.976 21 H 0.025 0.975 22 H 0.079 0.921 23 H 0.057 0.943 24 H 0.016 0.984 25 H 0.011 0.989 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.085 0.915 29 H 0.054 0.946 30 H 0.007 0.993 31 H 0.250 0.750 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.650 -4.706 -5.907 7.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.087 3.913 3 H 0.117 0.883 4 C -0.091 4.091 5 N -0.242 5.242 6 C -0.122 4.122 7 C -0.117 4.117 8 N -0.249 5.249 9 C -0.359 4.359 10 H 0.083 0.917 11 C -0.197 4.197 12 N -0.545 5.545 13 Si 0.724 3.276 14 H -0.216 1.216 15 H -0.221 1.221 16 H -0.206 1.206 17 C 0.032 3.968 18 C -0.237 4.237 19 C -0.271 4.271 20 H 0.043 0.957 21 H 0.044 0.956 22 H 0.098 0.902 23 H 0.075 0.925 24 H 0.034 0.966 25 H 0.029 0.971 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.104 0.896 29 H 0.072 0.928 30 H 0.026 0.974 31 H 0.060 0.940 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.721 -4.709 -5.402 7.370 hybrid contribution 0.387 0.885 -0.286 1.008 sum 2.107 -3.824 -5.688 7.171 Atomic orbital electron populations 1.22112 0.98252 0.98791 1.01168 1.20285 0.91364 0.97188 0.82489 0.88307 1.22855 0.87041 1.00217 0.98999 1.61807 1.06069 1.11442 1.44875 1.22355 1.00133 0.97478 0.92198 1.22352 0.98615 0.90642 1.00079 1.43163 1.60414 1.02543 1.18812 1.19128 1.11146 0.92059 1.13564 0.91683 1.24988 0.96226 0.98759 0.99771 1.70053 1.23188 1.10468 1.50784 0.86410 0.81103 0.80302 0.79753 1.21639 1.22051 1.20576 1.20881 0.99155 0.87288 0.89499 1.22986 0.96431 0.99275 1.04974 1.23400 0.92160 1.02390 1.09176 0.95688 0.95582 0.90197 0.92478 0.96592 0.97099 0.92292 0.92239 0.89633 0.92758 0.97407 0.93974 0.89929 0.91122 0.88718 0.89381 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 9.05 37.16 0.34 -2.80 16 2 C 0.19 4.38 1.54 -67.93 -0.10 4.28 16 3 H 0.10 2.53 4.64 -51.93 -0.24 2.28 16 4 C 0.04 0.74 4.14 -3.82 -0.02 0.73 16 5 N -0.52 -9.89 4.74 -251.26 -1.19 -11.08 16 6 C 0.03 0.42 9.57 60.06 0.57 0.99 16 7 C 0.03 0.59 9.32 60.06 0.56 1.15 16 8 N -0.53 -12.78 2.43 -158.14 -0.38 -13.16 16 9 C -0.23 -6.03 8.84 -15.06 -0.13 -6.17 16 10 H 0.07 1.76 6.30 -52.49 -0.33 1.43 16 11 C 0.00 0.01 4.90 -17.43 -0.09 -0.08 16 12 N -0.90 -24.78 10.07 55.49 0.56 -24.22 16 13 Si 0.89 21.49 29.59 -169.99 -5.03 16.46 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 C 0.14 3.06 5.60 -67.93 -0.38 2.68 16 18 C -0.20 -4.03 9.80 -26.73 -0.26 -4.30 16 19 C -0.23 -4.76 10.36 -26.73 -0.28 -5.03 16 20 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 21 H 0.03 0.52 7.77 -51.93 -0.40 0.12 16 22 H 0.08 1.98 7.11 -51.93 -0.37 1.62 16 23 H 0.06 1.07 6.89 -51.93 -0.36 0.71 16 24 H 0.02 0.30 8.12 -51.93 -0.42 -0.12 16 25 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 26 H 0.06 0.84 8.12 -51.93 -0.42 0.42 16 27 H 0.06 0.87 8.12 -51.93 -0.42 0.45 16 28 H 0.09 1.87 6.58 -51.93 -0.34 1.53 16 29 H 0.05 0.93 8.12 -51.93 -0.42 0.50 16 30 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.25 6.78 8.32 -40.82 -0.34 6.44 16 32 H 0.08 1.69 6.83 -51.93 -0.35 1.33 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.09 2.09 6.28 -51.93 -0.33 1.77 16 35 H 0.09 2.05 8.14 -51.93 -0.42 1.63 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 283.32 15.07 4.27 4.27 Total: -1.00 -27.06 283.32 -7.65 -34.71 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -6.08 Total: 1.56 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: 0.21 Total: -8.54 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: -1.02 Total: -48.46 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -27.06 -7.65 -34.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714003593.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.611 kcal (2) G-P(sol) polarization free energy of solvation -27.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds