Wall clock time and date at job start Mon Mar 30 2020 03:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47507 * 2 1 4 4 C 1.53004 * 109.47199 * 239.99658 * 2 1 3 5 5 N 1.46899 * 109.47066 * 185.00074 * 4 2 1 6 6 C 1.46897 * 110.99754 * 170.00575 * 5 4 2 7 7 C 1.46899 * 111.00092 * 293.95716 * 5 4 2 8 8 N 1.46504 * 109.46979 * 120.00100 * 2 1 3 9 9 C 1.36934 * 120.00022 * 244.05544 * 8 2 1 10 10 H 1.08001 * 120.00085 * 210.55112 * 9 8 2 11 11 C 1.38817 * 119.99833 * 30.55526 * 9 8 2 12 12 N 1.31624 * 119.99872 * 15.89454 * 11 9 8 13 13 Si 1.86802 * 119.99931 * 195.90240 * 11 9 8 14 14 H 1.48501 * 109.47235 * 89.99684 * 13 11 9 15 15 H 1.48497 * 109.46801 * 209.99651 * 13 11 9 16 16 H 1.48503 * 109.46958 * 329.99460 * 13 11 9 17 17 C 1.46506 * 120.00202 * 64.05898 * 8 2 1 18 18 C 1.52991 * 117.51869 * 176.76485 * 17 8 2 19 19 C 1.52995 * 117.49742 * 245.39800 * 17 8 2 20 20 H 1.09002 * 109.47036 * 60.00359 * 1 2 3 21 21 H 1.09000 * 109.47008 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46925 * 299.99591 * 1 2 3 23 23 H 1.09006 * 109.47238 * 305.00386 * 4 2 1 24 24 H 1.08994 * 109.46633 * 65.00190 * 4 2 1 25 25 H 1.09001 * 109.47848 * 59.99593 * 6 5 4 26 26 H 1.09003 * 109.47257 * 180.02562 * 6 5 4 27 27 H 1.09005 * 109.47365 * 299.99758 * 6 5 4 28 28 H 1.08993 * 109.47322 * 59.99910 * 7 5 4 29 29 H 1.09000 * 109.47340 * 180.02562 * 7 5 4 30 30 H 1.09005 * 109.46931 * 300.00327 * 7 5 4 31 31 H 0.96996 * 119.99169 * 184.56410 * 12 11 9 32 32 H 1.08999 * 115.54556 * 31.06356 * 17 8 2 33 33 H 1.09000 * 117.50183 * 214.96760 * 18 17 8 34 34 H 1.09000 * 117.50025 * 359.97438 * 18 17 8 35 35 H 1.09001 * 117.49984 * 359.96784 * 19 17 8 36 36 H 1.09003 * 117.50085 * 144.99431 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5041 -0.8267 -1.1903 6 6 4.0107 -1.7144 -2.2454 7 6 4.1311 0.4992 -1.2719 8 7 2.0183 -0.6907 1.1962 9 6 2.7357 -0.0035 2.1387 10 1 3.4880 -0.5132 2.7223 11 6 2.4958 1.3483 2.3440 12 7 1.3947 1.8994 1.8789 13 14 3.7358 2.3852 3.2803 14 1 4.7208 2.9587 2.3283 15 1 3.0296 3.4854 3.9846 16 1 4.4428 1.5358 4.2723 17 6 1.7392 -2.1166 1.3841 18 6 2.3399 -2.7982 2.6150 19 6 0.8381 -2.5116 2.5557 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.6054 -1.7199 -1.2951 24 1 1.7517 -0.1584 -2.1369 25 1 3.7278 -1.3182 -3.2207 26 1 5.0970 -1.7750 -2.1787 27 1 3.5834 -2.7093 -2.1196 28 1 3.7911 1.1137 -0.4384 29 1 5.2148 0.3921 -1.2265 30 1 3.8524 0.9757 -2.2119 31 1 1.2578 2.8559 1.9641 32 1 1.6630 -2.7050 0.4698 33 1 2.6588 -3.8353 2.5107 34 1 2.9433 -2.1860 3.2852 35 1 0.4533 -1.7107 3.1870 36 1 0.1690 -3.3601 2.4123 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714003593.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:07 Heat of formation + Delta-G solvation = 43.098147 kcal Electronic energy + Delta-G solvation = -15479.656455 eV Core-core repulsion = 13193.212405 eV Total energy + Delta-G solvation = -2286.444050 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.44978 -37.63103 -35.29796 -33.28662 -30.55773 -28.33292 -27.48925 -25.96305 -23.24465 -22.91416 -22.20872 -20.60083 -18.02844 -17.07512 -16.58393 -16.17865 -15.75707 -15.47932 -15.30675 -14.52113 -13.84223 -13.62252 -13.37535 -13.13702 -12.95163 -12.72136 -12.63194 -12.52420 -12.41731 -12.32336 -12.06392 -11.85746 -11.49762 -11.14798 -11.03781 -10.77730 -10.27057 -8.95040 -8.32607 -7.69537 -5.15776 1.47276 1.50429 1.56478 2.58403 3.25043 3.31656 3.58028 3.67793 4.24092 4.39839 4.43238 4.55285 4.56157 4.59624 4.70012 4.78942 4.86476 4.93428 4.98670 5.01213 5.06544 5.08101 5.15405 5.24484 5.26955 5.50471 5.60633 5.79760 5.82931 5.98667 6.35052 6.45071 6.60953 7.34525 8.08304 8.54461 9.30354 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.021534 B = 0.015069 C = 0.012019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.961116 B = 1857.613440 C = 2329.122329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.193 3.807 3 H 0.066 0.934 4 C 0.051 3.949 5 N -0.541 5.541 6 C 0.030 3.970 7 C 0.039 3.961 8 N -0.544 5.544 9 C -0.226 4.226 10 H 0.054 0.946 11 C -0.042 4.042 12 N -0.920 5.920 13 Si 0.943 3.057 14 H -0.287 1.287 15 H -0.301 1.301 16 H -0.278 1.278 17 C 0.127 3.873 18 C -0.188 4.188 19 C -0.223 4.223 20 H 0.041 0.959 21 H 0.038 0.962 22 H 0.042 0.958 23 H 0.069 0.931 24 H 0.025 0.975 25 H 0.023 0.977 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.045 0.955 29 H 0.067 0.933 30 H 0.021 0.979 31 H 0.243 0.757 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.169 -6.417 -7.077 9.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.086 3.914 3 H 0.084 0.916 4 C -0.079 4.079 5 N -0.264 5.264 6 C -0.118 4.118 7 C -0.109 4.109 8 N -0.260 5.260 9 C -0.358 4.358 10 H 0.072 0.928 11 C -0.237 4.237 12 N -0.567 5.567 13 Si 0.773 3.227 14 H -0.214 1.214 15 H -0.228 1.228 16 H -0.204 1.204 17 C 0.018 3.982 18 C -0.226 4.226 19 C -0.264 4.264 20 H 0.060 0.940 21 H 0.057 0.943 22 H 0.061 0.939 23 H 0.088 0.912 24 H 0.043 0.957 25 H 0.042 0.958 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.039 0.961 31 H 0.053 0.947 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.249 -6.444 -6.579 9.480 hybrid contribution 0.229 1.359 0.073 1.380 sum 2.478 -5.085 -6.506 8.621 Atomic orbital electron populations 1.21944 0.97943 0.99173 1.00153 1.20209 0.91564 0.95954 0.83660 0.91646 1.22607 0.87655 1.00338 0.97283 1.61745 1.05724 1.11848 1.47121 1.22381 1.00792 0.97023 0.91596 1.22197 0.99260 0.90416 0.99050 1.43262 1.60434 1.03488 1.18864 1.19184 1.10797 0.92325 1.13449 0.92794 1.25473 0.97487 0.99667 1.01074 1.70185 1.24291 1.09959 1.52225 0.85633 0.79490 0.78835 0.78725 1.21445 1.22846 1.20362 1.21115 1.00117 0.86254 0.90711 1.22981 0.95735 1.00492 1.03425 1.23307 0.92934 1.02355 1.07821 0.93988 0.94303 0.93891 0.91247 0.95673 0.95804 0.91189 0.91227 0.93576 0.91408 0.96061 0.94728 0.87934 0.87797 0.91083 0.92764 0.88505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.72 9.05 71.98 0.65 -5.07 16 2 C 0.19 8.66 1.54 44.99 0.07 8.73 16 3 H 0.07 3.41 4.64 -2.39 -0.01 3.40 16 4 C 0.05 1.86 4.14 86.30 0.36 2.22 16 5 N -0.54 -19.44 4.74 -948.84 -4.50 -23.94 16 6 C 0.03 0.82 9.57 127.69 1.22 2.04 16 7 C 0.04 1.42 9.32 127.69 1.19 2.61 16 8 N -0.54 -25.91 2.43 -654.24 -1.59 -27.50 16 9 C -0.23 -12.09 8.84 84.04 0.74 -11.35 16 10 H 0.05 2.96 6.30 -2.91 -0.02 2.94 16 11 C -0.04 -2.27 4.90 84.86 0.42 -1.86 16 12 N -0.92 -52.17 10.07 21.65 0.22 -51.95 16 13 Si 0.94 45.13 29.59 68.60 2.03 47.16 16 14 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 15 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 16 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 17 C 0.13 5.25 5.60 44.99 0.25 5.50 16 18 C -0.19 -7.28 9.80 30.59 0.30 -6.98 16 19 C -0.22 -8.86 10.36 30.59 0.32 -8.55 16 20 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 21 H 0.04 1.52 7.77 -2.39 -0.02 1.51 16 22 H 0.04 2.16 7.11 -2.39 -0.02 2.14 16 23 H 0.07 2.38 6.89 -2.38 -0.02 2.36 16 24 H 0.03 0.88 8.12 -2.39 -0.02 0.86 16 25 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.07 1.75 8.12 -2.39 -0.02 1.73 16 27 H 0.07 1.76 8.12 -2.38 -0.02 1.74 16 28 H 0.05 2.04 6.58 -2.39 -0.02 2.02 16 29 H 0.07 2.21 8.12 -2.39 -0.02 2.19 16 30 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.24 13.64 8.32 -92.71 -0.77 12.87 16 32 H 0.10 3.83 6.83 -2.39 -0.02 3.82 16 33 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 34 H 0.07 3.10 6.28 -2.39 -0.01 3.09 16 35 H 0.05 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -58.27 283.32 2.70 -55.57 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 1.03 Total: 13.36 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: 5.52 Total: -12.69 kcal Atomic # 7 Polarization: -97.52 SS G_CDS: -5.87 Total: -103.39 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -58.27 2.70 -55.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714003593.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.663 kcal (2) G-P(sol) polarization free energy of solvation -58.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds