Wall clock time and date at job start Mon Mar 30 2020 03:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.47236 * 2 1 4 4 C 1.53004 * 109.46914 * 120.00156 * 2 1 3 5 5 N 1.46895 * 109.46805 * 176.43390 * 4 2 1 6 6 C 1.46899 * 111.00405 * 76.10494 * 5 4 2 7 7 C 1.46899 * 110.99514 * 200.05760 * 5 4 2 8 8 N 1.46497 * 109.46708 * 240.00026 * 2 1 3 9 9 C 1.36943 * 119.99979 * 115.77498 * 8 2 1 10 10 H 1.07997 * 120.00101 * 144.74753 * 9 8 2 11 11 C 1.38811 * 119.99770 * 324.75257 * 9 8 2 12 12 N 1.31627 * 119.99880 * 346.42764 * 11 9 8 13 13 Si 1.86797 * 120.00101 * 166.43262 * 11 9 8 14 14 H 1.48498 * 109.47243 * 89.99422 * 13 11 9 15 15 H 1.48500 * 109.47263 * 210.00084 * 13 11 9 16 16 H 1.48506 * 109.46867 * 329.99431 * 13 11 9 17 17 C 1.46500 * 120.00273 * 295.76828 * 8 2 1 18 18 C 1.52996 * 117.49887 * 193.39415 * 17 8 2 19 19 C 1.52994 * 117.49776 * 124.73332 * 17 8 2 20 20 H 1.08999 * 109.47139 * 59.99679 * 1 2 3 21 21 H 1.08998 * 109.47236 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46991 * 299.99936 * 1 2 3 23 23 H 1.08996 * 109.46750 * 296.43204 * 4 2 1 24 24 H 1.08998 * 109.46876 * 56.43339 * 4 2 1 25 25 H 1.08998 * 109.47119 * 59.99426 * 6 5 4 26 26 H 1.09000 * 109.47230 * 179.97438 * 6 5 4 27 27 H 1.08996 * 109.46731 * 299.99718 * 6 5 4 28 28 H 1.09004 * 109.47461 * 64.32318 * 7 5 4 29 29 H 1.09003 * 109.47188 * 184.31792 * 7 5 4 30 30 H 1.09002 * 109.47399 * 304.31858 * 7 5 4 31 31 H 0.96995 * 119.99795 * 185.03088 * 12 11 9 32 32 H 1.09004 * 115.54916 * 339.06383 * 17 8 2 33 33 H 1.08998 * 117.50051 * 359.97438 * 18 17 8 34 34 H 1.09007 * 117.49434 * 145.02586 * 18 17 8 35 35 H 1.09007 * 117.49995 * 214.97941 * 19 17 8 36 36 H 1.08999 * 117.49835 * 0.02562 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5065 -0.7963 1.2069 6 6 4.1099 0.4999 1.5437 7 6 4.0051 -1.8556 2.0943 8 7 2.0183 -0.6906 -1.1962 9 6 2.7327 -0.0026 -2.1404 10 1 3.5366 -0.4908 -2.6711 11 6 2.4236 1.3225 -2.4152 12 7 1.2946 1.8392 -1.9784 13 14 3.6099 2.3723 -3.4052 14 1 3.2864 2.2564 -4.8498 15 1 3.4869 3.7906 -2.9826 16 1 4.9996 1.9045 -3.1699 17 6 1.7424 -2.1173 -1.3822 18 6 2.5279 -2.8527 -2.4699 19 6 1.0441 -2.5388 -2.6766 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.7298 -0.1719 2.1380 24 1 1.6254 -1.7288 1.2817 25 1 3.8038 0.7934 2.5478 26 1 5.1960 0.4160 1.5053 27 1 3.7777 1.2521 0.8282 28 1 3.6591 -2.8244 1.7338 29 1 5.0950 -1.8393 2.1028 30 1 3.6313 -1.6891 3.1046 31 1 1.0443 2.7415 -2.2313 32 1 1.4989 -2.6712 -0.4756 33 1 3.2497 -2.2750 -3.0473 34 1 2.8008 -3.8907 -2.2789 35 1 0.3414 -3.3703 -2.6216 36 1 0.7903 -1.7547 -3.3899 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714003596.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:10 Heat of formation + Delta-G solvation = 58.066093 kcal Electronic energy + Delta-G solvation = -15434.454371 eV Core-core repulsion = 13148.659380 eV Total energy + Delta-G solvation = -2285.794991 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -37.72961 -36.07915 -33.51815 -31.42420 -28.63204 -27.02490 -25.94041 -23.99131 -21.66025 -21.21465 -20.59572 -18.84655 -16.14907 -15.27677 -14.89314 -14.59630 -14.12545 -13.90936 -13.60692 -12.75151 -12.15014 -11.98168 -11.80979 -11.70310 -11.24002 -11.09968 -10.92957 -10.82994 -10.70521 -10.62272 -10.31481 -9.99911 -9.69946 -9.39009 -9.25672 -9.10144 -8.31100 -7.52703 -6.24596 -5.71165 -3.14423 3.41255 3.48607 3.51996 4.54306 4.66935 5.14384 5.39686 5.51466 5.64304 5.71081 5.86224 5.97282 6.05869 6.14744 6.20996 6.28659 6.30610 6.44407 6.52585 6.59561 6.64135 6.70399 6.78678 6.93075 6.98293 7.21150 7.35851 7.58712 7.66070 7.83576 7.91619 8.01120 8.66661 9.37006 9.98217 10.54980 11.37282 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.021880 B = 0.014555 C = 0.011928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.427737 B = 1923.215641 C = 2346.927603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.200 3.800 3 H 0.091 0.909 4 C 0.038 3.962 5 N -0.519 5.519 6 C 0.033 3.967 7 C 0.029 3.971 8 N -0.531 5.531 9 C -0.234 4.234 10 H 0.061 0.939 11 C 0.008 3.992 12 N -0.902 5.902 13 Si 0.896 3.104 14 H -0.289 1.289 15 H -0.292 1.292 16 H -0.279 1.279 17 C 0.144 3.856 18 C -0.205 4.205 19 C -0.228 4.228 20 H 0.084 0.916 21 H 0.024 0.976 22 H 0.023 0.977 23 H 0.019 0.981 24 H 0.056 0.944 25 H 0.009 0.991 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.010 0.990 31 H 0.252 0.748 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.732 -4.656 6.149 7.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.093 3.907 3 H 0.109 0.891 4 C -0.091 4.091 5 N -0.241 5.241 6 C -0.115 4.115 7 C -0.120 4.120 8 N -0.246 5.246 9 C -0.364 4.364 10 H 0.079 0.921 11 C -0.191 4.191 12 N -0.546 5.546 13 Si 0.726 3.274 14 H -0.216 1.216 15 H -0.218 1.218 16 H -0.205 1.205 17 C 0.034 3.966 18 C -0.244 4.244 19 C -0.269 4.269 20 H 0.102 0.898 21 H 0.043 0.957 22 H 0.042 0.958 23 H 0.037 0.963 24 H 0.074 0.926 25 H 0.027 0.973 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.029 0.971 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.866 -4.522 5.738 7.540 hybrid contribution 0.303 0.715 0.183 0.798 sum 2.169 -3.807 5.921 7.366 Atomic orbital electron populations 1.22172 0.98237 0.98787 1.01388 1.20180 0.91225 0.96660 0.82614 0.89090 1.22901 0.86840 1.00322 0.99073 1.61791 1.06924 1.04523 1.50904 1.22330 0.98957 0.92234 0.98028 1.22351 0.99902 0.96105 0.93624 1.43120 1.60546 1.02345 1.18605 1.19004 1.08920 0.93331 1.15168 0.92099 1.25149 0.96102 0.98844 0.98958 1.69919 1.21181 1.15883 1.47649 0.86392 0.81257 0.79816 0.79952 1.21609 1.21795 1.20463 1.20839 0.99216 0.87117 0.89446 1.23038 0.95013 0.99029 1.07326 1.23351 0.93681 1.02622 1.07251 0.89764 0.95698 0.95761 0.96320 0.92551 0.97276 0.92555 0.90495 0.92072 0.92352 0.97132 0.93798 0.89895 0.88924 0.91318 0.91663 0.89231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 9.05 37.16 0.34 -2.86 16 2 C 0.20 4.55 1.79 -67.93 -0.12 4.43 16 3 H 0.09 2.35 5.24 -51.93 -0.27 2.08 16 4 C 0.04 0.74 4.23 -3.82 -0.02 0.72 16 5 N -0.52 -9.83 4.70 -251.27 -1.18 -11.01 16 6 C 0.03 0.59 9.39 60.06 0.56 1.15 16 7 C 0.03 0.45 9.51 60.06 0.57 1.02 16 8 N -0.53 -12.83 2.46 -158.14 -0.39 -13.22 16 9 C -0.23 -6.24 8.72 -15.06 -0.13 -6.37 16 10 H 0.06 1.67 6.25 -52.49 -0.33 1.34 16 11 C 0.01 0.21 4.92 -17.43 -0.09 0.12 16 12 N -0.90 -25.00 10.08 55.49 0.56 -24.44 16 13 Si 0.90 21.63 29.58 -169.99 -5.03 16.60 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 15 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 C 0.14 3.13 5.63 -67.94 -0.38 2.75 16 18 C -0.21 -4.20 9.86 -26.70 -0.26 -4.46 16 19 C -0.23 -4.78 10.19 -26.70 -0.27 -5.05 16 20 H 0.08 2.10 6.87 -51.93 -0.36 1.75 16 21 H 0.02 0.50 7.78 -51.93 -0.40 0.10 16 22 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.02 0.34 7.95 -51.93 -0.41 -0.07 16 24 H 0.06 1.05 6.65 -51.93 -0.35 0.71 16 25 H 0.01 0.14 8.08 -51.93 -0.42 -0.28 16 26 H 0.06 0.92 8.07 -51.93 -0.42 0.50 16 27 H 0.08 1.57 6.97 -51.93 -0.36 1.20 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.83 8.05 -51.93 -0.42 0.41 16 30 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 31 H 0.25 6.87 8.32 -40.82 -0.34 6.53 16 32 H 0.08 1.69 6.79 -51.93 -0.35 1.33 16 33 H 0.09 2.06 6.31 -51.93 -0.33 1.73 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 LS Contribution 283.60 15.07 4.27 4.27 Total: -1.00 -27.45 283.60 -7.65 -35.11 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.09 Total: 1.24 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: 0.20 Total: -8.55 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: -1.01 Total: -48.67 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -27.45 -7.65 -35.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714003596.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.172 kcal (2) G-P(sol) polarization free energy of solvation -27.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds