Wall clock time and date at job start Mon Mar 30 2020 03:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.47236 * 2 1 4 4 C 1.53004 * 109.46914 * 120.00156 * 2 1 3 5 5 N 1.46895 * 109.46805 * 176.43390 * 4 2 1 6 6 C 1.46899 * 111.00405 * 76.10494 * 5 4 2 7 7 C 1.46899 * 110.99514 * 200.05760 * 5 4 2 8 8 N 1.46497 * 109.46708 * 240.00026 * 2 1 3 9 9 C 1.36943 * 119.99979 * 115.77498 * 8 2 1 10 10 H 1.07997 * 120.00101 * 144.74753 * 9 8 2 11 11 C 1.38811 * 119.99770 * 324.75257 * 9 8 2 12 12 N 1.31627 * 119.99880 * 346.42764 * 11 9 8 13 13 Si 1.86797 * 120.00101 * 166.43262 * 11 9 8 14 14 H 1.48498 * 109.47243 * 89.99422 * 13 11 9 15 15 H 1.48500 * 109.47263 * 210.00084 * 13 11 9 16 16 H 1.48506 * 109.46867 * 329.99431 * 13 11 9 17 17 C 1.46500 * 120.00273 * 295.76828 * 8 2 1 18 18 C 1.52996 * 117.49887 * 193.39415 * 17 8 2 19 19 C 1.52994 * 117.49776 * 124.73332 * 17 8 2 20 20 H 1.08999 * 109.47139 * 59.99679 * 1 2 3 21 21 H 1.08998 * 109.47236 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46991 * 299.99936 * 1 2 3 23 23 H 1.08996 * 109.46750 * 296.43204 * 4 2 1 24 24 H 1.08998 * 109.46876 * 56.43339 * 4 2 1 25 25 H 1.08998 * 109.47119 * 59.99426 * 6 5 4 26 26 H 1.09000 * 109.47230 * 179.97438 * 6 5 4 27 27 H 1.08996 * 109.46731 * 299.99718 * 6 5 4 28 28 H 1.09004 * 109.47461 * 64.32318 * 7 5 4 29 29 H 1.09003 * 109.47188 * 184.31792 * 7 5 4 30 30 H 1.09002 * 109.47399 * 304.31858 * 7 5 4 31 31 H 0.96995 * 119.99795 * 185.03088 * 12 11 9 32 32 H 1.09004 * 115.54916 * 339.06383 * 17 8 2 33 33 H 1.08998 * 117.50051 * 359.97438 * 18 17 8 34 34 H 1.09007 * 117.49434 * 145.02586 * 18 17 8 35 35 H 1.09007 * 117.49995 * 214.97941 * 19 17 8 36 36 H 1.08999 * 117.49835 * 0.02562 * 19 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5065 -0.7963 1.2069 6 6 4.1099 0.4999 1.5437 7 6 4.0051 -1.8556 2.0943 8 7 2.0183 -0.6906 -1.1962 9 6 2.7327 -0.0026 -2.1404 10 1 3.5366 -0.4908 -2.6711 11 6 2.4236 1.3225 -2.4152 12 7 1.2946 1.8392 -1.9784 13 14 3.6099 2.3723 -3.4052 14 1 3.2864 2.2564 -4.8498 15 1 3.4869 3.7906 -2.9826 16 1 4.9996 1.9045 -3.1699 17 6 1.7424 -2.1173 -1.3822 18 6 2.5279 -2.8527 -2.4699 19 6 1.0441 -2.5388 -2.6766 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.7298 -0.1719 2.1380 24 1 1.6254 -1.7288 1.2817 25 1 3.8038 0.7934 2.5478 26 1 5.1960 0.4160 1.5053 27 1 3.7777 1.2521 0.8282 28 1 3.6591 -2.8244 1.7338 29 1 5.0950 -1.8393 2.1028 30 1 3.6313 -1.6891 3.1046 31 1 1.0443 2.7415 -2.2313 32 1 1.4989 -2.6712 -0.4756 33 1 3.2497 -2.2750 -3.0473 34 1 2.8008 -3.8907 -2.2789 35 1 0.3414 -3.3703 -2.6216 36 1 0.7903 -1.7547 -3.3899 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714003596.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:10 Heat of formation + Delta-G solvation = 41.898817 kcal Electronic energy + Delta-G solvation = -15435.155437 eV Core-core repulsion = 13148.659380 eV Total energy + Delta-G solvation = -2286.496057 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.39024 -37.63632 -35.29007 -33.32350 -30.51094 -28.33857 -27.48166 -25.96791 -23.19717 -22.88971 -22.25468 -20.65798 -18.00606 -17.07370 -16.58378 -16.15656 -15.76580 -15.44637 -15.29475 -14.43252 -13.88043 -13.61814 -13.41312 -13.17006 -12.93336 -12.71947 -12.62475 -12.47554 -12.44225 -12.38509 -12.04211 -11.86366 -11.51700 -11.14501 -11.04788 -10.78590 -10.31549 -8.92565 -8.16816 -7.74826 -5.18983 1.45680 1.48824 1.56616 2.56442 3.25961 3.31308 3.60646 3.67845 4.23243 4.38327 4.43684 4.55234 4.56466 4.62357 4.69319 4.79198 4.86597 4.92337 4.97092 5.02355 5.06314 5.08059 5.14660 5.22416 5.26045 5.50234 5.62868 5.81303 5.81650 5.99990 6.37141 6.45004 6.64879 7.35934 8.08123 8.56238 9.30150 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.021880 B = 0.014555 C = 0.011928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.427737 B = 1923.215641 C = 2346.927603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.200 3.800 3 H 0.054 0.946 4 C 0.051 3.949 5 N -0.545 5.545 6 C 0.039 3.961 7 C 0.032 3.968 8 N -0.543 5.543 9 C -0.233 4.233 10 H 0.049 0.951 11 C -0.037 4.037 12 N -0.921 5.921 13 Si 0.947 3.053 14 H -0.292 1.292 15 H -0.295 1.295 16 H -0.277 1.277 17 C 0.130 3.870 18 C -0.192 4.192 19 C -0.224 4.224 20 H 0.046 0.954 21 H 0.038 0.962 22 H 0.041 0.959 23 H 0.029 0.971 24 H 0.068 0.932 25 H 0.026 0.974 26 H 0.069 0.931 27 H 0.041 0.959 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.026 0.974 31 H 0.245 0.755 32 H 0.105 0.895 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.220 -6.320 7.341 9.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.093 3.907 3 H 0.072 0.928 4 C -0.079 4.079 5 N -0.268 5.268 6 C -0.109 4.109 7 C -0.116 4.116 8 N -0.258 5.258 9 C -0.364 4.364 10 H 0.067 0.933 11 C -0.232 4.232 12 N -0.567 5.567 13 Si 0.777 3.223 14 H -0.219 1.219 15 H -0.221 1.221 16 H -0.202 1.202 17 C 0.021 3.979 18 C -0.231 4.231 19 C -0.265 4.265 20 H 0.066 0.934 21 H 0.057 0.943 22 H 0.060 0.940 23 H 0.047 0.953 24 H 0.087 0.913 25 H 0.045 0.955 26 H 0.088 0.912 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.123 0.877 33 H 0.087 0.913 34 H 0.121 0.879 35 H 0.114 0.886 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.362 -6.210 6.937 9.605 hybrid contribution 0.163 1.176 -0.183 1.202 sum 2.525 -5.033 6.754 8.794 Atomic orbital electron populations 1.22001 0.97873 0.99236 1.00414 1.20100 0.91471 0.95233 0.83852 0.92780 1.22632 0.87494 1.00416 0.97309 1.61711 1.06592 1.05613 1.52909 1.22217 0.99624 0.91247 0.97834 1.22361 1.00589 0.94925 0.93691 1.43224 1.60584 1.03332 1.18707 1.19063 1.08600 0.93611 1.15120 0.93304 1.25659 0.97303 0.99844 1.00422 1.70062 1.22311 1.15575 1.48761 0.85586 0.79851 0.78330 0.78564 1.21898 1.22116 1.20180 1.21081 1.00186 0.86051 0.90618 1.23019 0.94002 1.00278 1.05832 1.23270 0.94873 1.02587 1.05759 0.93449 0.94337 0.93998 0.95277 0.91320 0.95526 0.91207 0.94018 0.91558 0.91226 0.95585 0.94530 0.87721 0.91253 0.87944 0.88626 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.86 9.05 71.98 0.65 -5.21 16 2 C 0.20 9.04 1.79 45.00 0.08 9.12 16 3 H 0.05 2.86 5.24 -2.39 -0.01 2.84 16 4 C 0.05 1.86 4.23 86.31 0.36 2.23 16 5 N -0.54 -19.51 4.70 -948.86 -4.46 -23.98 16 6 C 0.04 1.35 9.39 127.69 1.20 2.55 16 7 C 0.03 0.89 9.51 127.69 1.21 2.10 16 8 N -0.54 -26.08 2.46 -654.25 -1.61 -27.68 16 9 C -0.23 -12.58 8.72 84.03 0.73 -11.85 16 10 H 0.05 2.73 6.25 -2.91 -0.02 2.71 16 11 C -0.04 -2.01 4.92 84.86 0.42 -1.60 16 12 N -0.92 -52.58 10.08 21.65 0.22 -52.36 16 13 Si 0.95 45.48 29.58 68.60 2.03 47.51 16 14 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 15 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 16 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 17 C 0.13 5.41 5.63 44.99 0.25 5.66 16 18 C -0.19 -7.49 9.86 30.62 0.30 -7.19 16 19 C -0.22 -9.05 10.19 30.62 0.31 -8.74 16 20 H 0.05 2.39 6.87 -2.39 -0.02 2.37 16 21 H 0.04 1.51 7.78 -2.39 -0.02 1.49 16 22 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.03 1.01 7.95 -2.39 -0.02 0.99 16 24 H 0.07 2.34 6.65 -2.39 -0.02 2.32 16 25 H 0.03 0.81 8.08 -2.39 -0.02 0.79 16 26 H 0.07 2.16 8.07 -2.39 -0.02 2.14 16 27 H 0.04 1.71 6.97 -2.39 -0.02 1.70 16 28 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.07 1.74 8.05 -2.39 -0.02 1.72 16 30 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.25 13.82 8.32 -92.71 -0.77 13.05 16 32 H 0.11 3.90 6.79 -2.38 -0.02 3.88 16 33 H 0.07 3.04 6.31 -2.39 -0.02 3.02 16 34 H 0.10 3.30 8.14 -2.38 -0.02 3.28 16 35 H 0.10 3.27 8.14 -2.38 -0.02 3.25 16 36 H 0.05 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -59.20 283.60 2.73 -56.47 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 1.03 Total: 12.95 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 5.53 Total: -12.91 kcal Atomic # 7 Polarization: -98.17 SS G_CDS: -5.85 Total: -104.02 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -59.20 2.73 -56.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714003596.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.369 kcal (2) G-P(sol) polarization free energy of solvation -59.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds