Wall clock time and date at job start Mon Mar 30 2020 02:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47233 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00173 * 8 6 4 11 11 H 1.48501 * 109.47364 * 240.00497 * 8 6 4 12 12 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 13 13 C 1.46899 * 111.00313 * 275.00230 * 12 2 1 14 14 H 1.08999 * 110.27065 * 327.08730 * 13 12 2 15 15 C 1.54595 * 110.31078 * 89.27972 * 13 12 2 16 16 C 1.54934 * 102.92015 * 96.95920 * 15 13 12 17 17 N 1.48526 * 103.22959 * 37.41907 * 16 15 13 18 18 C 1.46902 * 111.00479 * 200.28025 * 17 16 15 19 19 C 1.47902 * 105.81685 * 320.79004 * 17 16 15 20 20 H 1.09002 * 109.92250 * 265.97714 * 19 17 16 21 21 C 1.53007 * 109.91890 * 144.68209 * 19 17 16 22 22 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 25 25 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 26 26 H 1.00906 * 111.00118 * 38.95572 * 12 2 1 27 27 H 1.08993 * 110.72739 * 215.32308 * 15 13 12 28 28 H 1.09007 * 110.72254 * 338.60254 * 15 13 12 29 29 H 1.09005 * 110.67135 * 278.98070 * 16 15 13 30 30 H 1.09001 * 110.66424 * 155.84977 * 16 15 13 31 31 H 1.08998 * 109.47397 * 177.39454 * 18 17 16 32 32 H 1.09000 * 109.46516 * 297.39661 * 18 17 16 33 33 H 1.09000 * 109.47229 * 57.38972 * 18 17 16 34 34 H 1.08997 * 109.47260 * 302.41314 * 21 19 17 35 35 H 1.09005 * 109.46430 * 62.41385 * 21 19 17 36 36 H 1.09002 * 109.47256 * 182.40478 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 7 2.0197 -0.6925 1.1993 13 6 2.0825 0.2225 2.3469 14 1 2.3280 1.2307 2.0130 15 6 0.7377 0.2201 3.1093 16 6 0.9966 -0.7787 4.2651 17 7 2.4078 -0.5065 4.6399 18 6 2.9877 -1.6429 5.3682 19 6 3.1244 -0.2711 3.3677 20 1 3.5757 -1.1997 3.0182 21 6 4.2041 0.7946 3.5671 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 0.7093 1.1619 -3.4844 26 1 1.4496 -1.4980 1.4100 27 1 0.5140 1.2127 3.5001 28 1 -0.0691 -0.1337 2.4673 29 1 0.8817 -1.8059 3.9190 30 1 0.3302 -0.5774 5.1039 31 1 4.0347 -1.4362 5.5900 32 1 2.4419 -1.7940 6.2995 33 1 2.9166 -2.5416 4.7555 34 1 3.7455 1.7117 3.9367 35 1 4.9374 0.4379 4.2905 36 1 4.6987 0.9931 2.6163 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719643853.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:33 Heat of formation + Delta-G solvation = -16.434326 kcal Electronic energy + Delta-G solvation = -14878.006179 eV Core-core repulsion = 12588.980608 eV Total energy + Delta-G solvation = -2289.025571 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.48303 -37.20298 -34.50925 -32.32104 -32.00274 -29.39881 -27.28056 -25.87009 -25.53581 -22.34943 -21.80866 -20.97669 -18.36756 -16.93183 -16.81221 -16.33097 -15.58747 -15.25665 -15.06133 -14.48644 -14.17264 -14.04624 -13.59737 -13.33001 -13.08988 -12.99170 -12.79206 -12.59806 -12.36533 -12.14806 -12.01056 -12.00848 -11.91883 -11.71591 -11.56733 -10.86112 -10.48526 -9.40316 -8.95673 -8.09914 -6.21345 1.40871 1.42720 1.54863 2.43338 3.05440 3.18132 3.53250 3.74093 3.97805 4.19113 4.35615 4.42866 4.54531 4.60976 4.63391 4.74544 4.77665 4.88494 4.90858 4.95841 5.02023 5.08983 5.10629 5.15621 5.24486 5.40074 5.44697 5.69218 5.82998 5.93933 6.16666 6.28811 6.65749 6.82802 6.94554 7.48917 8.95456 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.047053 B = 0.007476 C = 0.007100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.926281 B = 3744.498208 C = 3942.494069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.220 3.780 3 H 0.000 1.000 4 C -0.517 4.517 5 H 0.053 0.947 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.959 3.041 9 H -0.270 1.270 10 H -0.280 1.280 11 H -0.281 1.281 12 N -0.679 5.679 13 C 0.079 3.921 14 H 0.060 0.940 15 C -0.155 4.155 16 C 0.043 3.957 17 N -0.525 5.525 18 C 0.017 3.983 19 C 0.073 3.927 20 H 0.050 0.950 21 C -0.124 4.124 22 H 0.036 0.964 23 H 0.029 0.971 24 H 0.058 0.942 25 H 0.261 0.739 26 H 0.329 0.671 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.043 0.957 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.023 0.977 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.381 -2.884 13.219 13.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.111 3.889 3 H 0.018 0.982 4 C -0.555 4.555 5 H 0.071 0.929 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.785 3.215 9 H -0.194 1.194 10 H -0.205 1.205 11 H -0.207 1.207 12 N -0.308 5.308 13 C -0.032 4.032 14 H 0.079 0.921 15 C -0.194 4.194 16 C -0.085 4.085 17 N -0.249 5.249 18 C -0.131 4.131 19 C -0.036 4.036 20 H 0.068 0.932 21 C -0.182 4.182 22 H 0.055 0.945 23 H 0.048 0.952 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.147 0.853 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.113 0.887 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.042 0.958 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.041 -2.254 13.263 13.607 hybrid contribution -0.829 -0.804 -1.444 1.848 sum 1.213 -3.058 11.819 12.269 Atomic orbital electron populations 1.22361 0.99836 0.99124 1.00451 1.18945 0.90184 0.92399 0.87335 0.98211 1.21516 1.30342 1.12429 0.91239 0.92907 1.25705 0.95477 0.95882 1.01860 1.70014 1.38089 1.24248 1.23912 0.85484 0.78079 0.78591 0.79306 1.19421 1.20539 1.20729 1.60716 1.57576 1.09102 1.03364 1.22490 0.94322 0.95866 0.90529 0.92142 1.23330 0.97853 1.00578 0.97674 1.23179 0.90500 0.97167 0.97653 1.64755 1.02370 1.38814 1.18984 1.22548 1.00994 0.90898 0.98687 1.22385 0.94521 0.98619 0.88033 0.93159 1.21621 0.97319 0.98231 1.01038 0.94506 0.95179 0.92302 0.93012 0.85345 0.90682 0.91028 0.93902 0.88654 0.90836 0.89963 0.95801 0.92299 0.91641 0.93218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.57 8.35 71.98 0.60 -6.97 16 2 C 0.22 11.18 2.57 44.17 0.11 11.29 16 3 H 0.00 0.00 7.43 -2.39 -0.02 -0.02 16 4 C -0.52 -29.05 8.84 25.60 0.23 -28.82 16 5 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 6 C 0.01 0.49 5.30 84.65 0.45 0.94 16 7 N -0.92 -53.58 11.32 21.45 0.24 -53.34 16 8 Si 0.96 44.38 29.54 68.60 2.03 46.41 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 12 N -0.68 -28.80 5.94 -468.83 -2.78 -31.58 16 13 C 0.08 2.86 2.94 45.79 0.13 2.99 16 14 H 0.06 2.41 6.98 -2.39 -0.02 2.39 16 15 C -0.15 -4.75 5.96 31.80 0.19 -4.56 16 16 C 0.04 1.10 6.56 86.65 0.57 1.67 16 17 N -0.52 -13.92 5.18 -884.07 -4.58 -18.51 16 18 C 0.02 0.37 9.40 127.69 1.20 1.57 16 19 C 0.07 2.26 2.89 45.06 0.13 2.39 16 20 H 0.05 1.69 7.52 -2.39 -0.02 1.67 16 21 C -0.12 -3.48 9.32 71.98 0.67 -2.81 16 22 H 0.04 1.54 5.73 -2.39 -0.01 1.53 16 23 H 0.03 1.36 8.13 -2.39 -0.02 1.34 16 24 H 0.06 3.17 6.07 -2.38 -0.01 3.15 16 25 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 26 H 0.33 13.31 8.15 -89.69 -0.73 12.58 16 27 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.07 2.32 5.48 -2.38 -0.01 2.31 16 29 H 0.04 1.11 7.96 -2.38 -0.02 1.09 16 30 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.02 0.53 8.00 -2.39 -0.02 0.51 16 34 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 36 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -59.39 280.00 -0.50 -59.90 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.31 Total: 19.42 kcal Atomic # 6 Polarization: -26.58 SS G_CDS: 4.28 Total: -22.29 kcal Atomic # 7 Polarization: -96.31 SS G_CDS: -7.12 Total: -103.43 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -59.39 -0.50 -59.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719643853.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.463 kcal (2) G-P(sol) polarization free energy of solvation -59.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds