Wall clock time and date at job start Mon Mar 30 2020 02:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47380 * 2 1 4 4 C 1.50702 * 109.47359 * 239.99787 * 2 1 3 5 5 H 1.08005 * 119.99438 * 266.06517 * 4 2 1 6 6 C 1.37869 * 120.00337 * 86.06311 * 4 2 1 7 7 N 1.31511 * 120.00569 * 185.13549 * 6 4 2 8 8 Si 1.86803 * 119.99892 * 5.13603 * 6 4 2 9 9 H 1.48503 * 109.47370 * 94.03560 * 8 6 4 10 10 H 1.48502 * 109.47204 * 214.03776 * 8 6 4 11 11 H 1.48501 * 109.46876 * 334.03524 * 8 6 4 12 12 N 1.46907 * 109.47027 * 119.99609 * 2 1 3 13 13 C 1.46892 * 110.99925 * 274.99961 * 12 2 1 14 14 H 1.09001 * 110.27736 * 42.87360 * 13 12 2 15 15 C 1.54596 * 110.39315 * 280.72739 * 13 12 2 16 16 C 1.54941 * 102.92108 * 219.08264 * 15 13 12 17 17 N 1.49003 * 103.25979 * 37.46021 * 16 15 13 18 18 C 1.46897 * 111.17018 * 200.30640 * 17 16 15 19 19 C 1.47909 * 105.57623 * 320.76803 * 17 16 15 20 20 H 1.09004 * 109.90721 * 265.92403 * 19 17 16 21 21 C 1.52991 * 109.91766 * 144.83034 * 19 17 16 22 22 H 1.08999 * 109.47444 * 305.05020 * 1 2 3 23 23 H 1.08996 * 109.46976 * 65.05152 * 1 2 3 24 24 H 1.09005 * 109.47112 * 185.04714 * 1 2 3 25 25 H 0.96996 * 120.00304 * 180.02562 * 7 6 4 26 26 H 1.00895 * 110.99805 * 38.95733 * 12 2 1 27 27 H 1.08998 * 110.72773 * 337.44404 * 15 13 12 28 28 H 1.08999 * 110.72504 * 100.55105 * 15 13 12 29 29 H 1.09003 * 110.66268 * 155.85311 * 16 15 13 30 30 H 1.08998 * 110.66713 * 278.81192 * 16 15 13 31 31 H 1.09001 * 109.47383 * 177.19971 * 18 17 16 32 32 H 1.08996 * 109.47044 * 297.20044 * 18 17 16 33 33 H 1.09001 * 109.47193 * 57.19812 * 18 17 16 34 34 H 1.08996 * 109.47287 * 296.27943 * 21 19 17 35 35 H 1.09000 * 109.47716 * 56.28683 * 21 19 17 36 36 H 1.09004 * 109.46907 * 176.28487 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.2729 -1.7624 -1.1861 6 6 2.1849 -0.0176 -2.4126 7 7 2.5260 -0.6567 -3.5102 8 14 1.9071 1.8292 -2.4553 9 1 3.2030 2.5292 -2.2660 10 1 1.3247 2.2119 -3.7666 11 1 0.9728 2.2144 -1.3673 12 7 2.0196 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 1 1.1899 0.8475 2.3809 15 6 3.3508 1.1028 2.2652 16 6 3.8160 1.1779 3.7412 17 7 3.5220 -0.1868 4.2620 18 6 3.4390 -0.1884 5.7287 19 6 2.2284 -0.5726 3.6574 20 1 1.4125 -0.3233 4.3359 21 6 2.2188 -2.0733 3.3603 22 1 -0.3634 0.5902 0.8413 23 1 -0.3633 0.4335 -0.9317 24 1 -0.3633 -1.0237 0.0904 25 1 2.6336 -0.1692 -4.3418 26 1 1.4495 -1.4978 1.4101 27 1 4.1107 0.6276 1.6449 28 1 3.1082 2.0945 1.8835 29 1 4.8840 1.3884 3.7976 30 1 3.2474 1.9315 4.2859 31 1 3.1745 -1.1870 6.0766 32 1 4.4034 0.0987 6.1475 33 1 2.6773 0.5219 6.0502 34 1 2.9821 -2.3013 2.6164 35 1 2.4273 -2.6264 4.2761 36 1 1.2401 -2.3615 2.9767 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719643858.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:38 Heat of formation + Delta-G solvation = -9.463631 kcal Electronic energy + Delta-G solvation = -14980.582971 eV Core-core repulsion = 12691.859672 eV Total energy + Delta-G solvation = -2288.723299 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.45554 -37.27698 -34.51094 -32.59408 -32.35778 -29.26665 -27.20500 -26.09964 -25.72393 -22.57526 -21.49617 -20.31669 -18.90885 -17.31936 -16.56696 -16.40785 -15.90336 -15.28977 -15.26632 -14.53450 -14.29646 -13.93780 -13.78820 -13.42073 -13.24606 -12.94549 -12.81545 -12.53282 -12.32743 -12.18812 -12.02370 -11.93351 -11.83943 -11.65200 -11.42045 -11.11544 -10.64960 -9.35578 -8.91738 -8.23659 -6.24386 1.33885 1.35326 1.45469 2.36665 3.06093 3.09907 3.54288 3.65253 3.88917 4.22439 4.31384 4.41924 4.48476 4.54436 4.57336 4.66224 4.69451 4.76886 4.82175 4.87127 4.93576 5.02461 5.04380 5.09834 5.16892 5.35762 5.44878 5.54731 5.72578 5.97040 6.11636 6.21880 6.75065 6.80958 6.85167 7.39519 8.94094 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.043706 B = 0.008655 C = 0.008106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.493739 B = 3234.360018 C = 3453.550642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.184 3.816 3 H 0.033 0.967 4 C -0.493 4.493 5 H 0.031 0.969 6 C 0.009 3.991 7 N -0.953 5.953 8 Si 0.937 3.063 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.240 1.240 12 N -0.674 5.674 13 C 0.074 3.926 14 H 0.040 0.960 15 C -0.119 4.119 16 C 0.045 3.955 17 N -0.530 5.530 18 C 0.018 3.982 19 C 0.071 3.929 20 H 0.060 0.940 21 C -0.128 4.128 22 H 0.048 0.952 23 H 0.039 0.961 24 H 0.049 0.951 25 H 0.263 0.737 26 H 0.337 0.663 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.033 0.967 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.811 4.837 17.775 18.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.074 3.926 3 H 0.051 0.949 4 C -0.532 4.532 5 H 0.049 0.951 6 C -0.188 4.188 7 N -0.594 5.594 8 Si 0.761 3.239 9 H -0.200 1.200 10 H -0.213 1.213 11 H -0.164 1.164 12 N -0.307 5.307 13 C -0.036 4.036 14 H 0.057 0.943 15 C -0.158 4.158 16 C -0.083 4.083 17 N -0.255 5.255 18 C -0.131 4.131 19 C -0.038 4.038 20 H 0.078 0.922 21 C -0.186 4.186 22 H 0.067 0.933 23 H 0.059 0.941 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.158 0.842 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.711 4.552 17.321 17.924 hybrid contribution -1.487 1.146 -0.372 1.914 sum -2.198 5.699 16.949 18.016 Atomic orbital electron populations 1.22557 0.99320 1.00675 0.99952 1.19469 0.90333 0.94061 0.88723 0.94949 1.21179 1.42002 0.96435 0.93602 0.95053 1.25795 0.94964 1.02975 0.95025 1.70059 1.50918 1.37899 1.00540 0.85908 0.79280 0.80638 0.78076 1.19982 1.21263 1.16360 1.60903 1.58091 1.09125 1.02560 1.22395 0.96742 0.93781 0.90724 0.94257 1.22551 0.97521 0.98736 0.96944 1.23237 1.01702 0.89697 0.93678 1.64806 1.29252 1.23792 1.07683 1.22555 1.01817 1.01917 0.86763 1.22418 0.90900 0.96639 0.93840 0.92171 1.21589 1.01581 0.93878 1.01590 0.93332 0.94138 0.93161 0.92760 0.84154 0.92132 0.91643 0.89396 0.92463 0.90889 0.90403 0.94894 0.92639 0.91914 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.73 8.76 71.98 0.63 -6.10 16 2 C 0.18 8.46 1.96 44.17 0.09 8.55 16 3 H 0.03 1.52 4.97 -2.39 -0.01 1.51 16 4 C -0.49 -28.47 9.19 25.60 0.24 -28.24 16 5 H 0.03 2.03 8.06 -2.91 -0.02 2.01 16 6 C 0.01 0.51 5.47 84.65 0.46 0.97 16 7 N -0.95 -60.54 13.96 21.44 0.30 -60.24 16 8 Si 0.94 44.48 26.40 68.60 1.81 46.29 16 9 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 10 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 11 H -0.24 -10.36 6.04 99.48 0.60 -9.76 16 12 N -0.67 -27.09 5.03 -468.82 -2.36 -29.45 16 13 C 0.07 2.44 3.13 45.79 0.14 2.59 16 14 H 0.04 1.26 7.28 -2.39 -0.02 1.24 16 15 C -0.12 -3.84 6.20 31.80 0.20 -3.64 16 16 C 0.04 1.12 6.58 86.56 0.57 1.69 16 17 N -0.53 -13.79 5.20 -882.77 -4.59 -18.38 16 18 C 0.02 0.34 9.42 127.69 1.20 1.54 16 19 C 0.07 1.93 3.07 45.05 0.14 2.07 16 20 H 0.06 1.44 7.73 -2.38 -0.02 1.43 16 21 C -0.13 -3.52 8.24 71.98 0.59 -2.93 16 22 H 0.05 1.67 7.48 -2.39 -0.02 1.65 16 23 H 0.04 1.71 7.04 -2.39 -0.02 1.69 16 24 H 0.05 1.97 8.04 -2.38 -0.02 1.95 16 25 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 26 H 0.34 12.76 5.80 -89.70 -0.52 12.24 16 27 H 0.06 2.33 8.06 -2.39 -0.02 2.31 16 28 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.06 1.23 7.98 -2.39 -0.02 1.21 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.03 0.57 8.02 -2.39 -0.02 0.55 16 34 H 0.05 1.86 7.46 -2.39 -0.02 1.84 16 35 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.06 1.53 7.08 -2.38 -0.02 1.51 16 Total: -1.00 -65.55 276.89 -0.17 -65.72 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 0.41 Total: 19.56 kcal Atomic # 6 Polarization: -27.76 SS G_CDS: 4.26 Total: -23.50 kcal Atomic # 7 Polarization: -101.43 SS G_CDS: -6.65 Total: -108.08 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.81 Total: 46.29 kcal Total: -65.55 -0.17 -65.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719643858.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.261 kcal (2) G-P(sol) polarization free energy of solvation -65.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds