Wall clock time and date at job start Mon Mar 30 2020 02:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 109.47047 * 2 1 4 4 C 1.50703 * 109.46901 * 240.00118 * 2 1 3 5 5 H 1.07993 * 120.00014 * 240.00258 * 4 2 1 6 6 C 1.37870 * 119.99943 * 59.99720 * 4 2 1 7 7 N 1.31513 * 120.00345 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00080 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47297 * 60.00310 * 8 6 4 10 10 H 1.48503 * 109.47413 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47136 * 300.00358 * 8 6 4 12 12 N 1.46900 * 109.46914 * 120.00322 * 2 1 3 13 13 C 1.46901 * 110.99602 * 274.99673 * 12 2 1 14 14 H 1.08999 * 110.27572 * 34.12186 * 13 12 2 15 15 C 1.54594 * 110.30747 * 156.31601 * 13 12 2 16 16 C 1.54943 * 102.92371 * 140.87101 * 15 13 12 17 17 N 1.48536 * 103.22554 * 322.58674 * 16 15 13 18 18 C 1.46899 * 110.99873 * 159.71784 * 17 16 15 19 19 C 1.47903 * 105.81928 * 39.20446 * 17 16 15 20 20 H 1.09000 * 109.91635 * 94.02281 * 19 17 16 21 21 C 1.53002 * 109.91524 * 215.11639 * 19 17 16 22 22 H 1.09005 * 109.47031 * 299.99537 * 1 2 3 23 23 H 1.08996 * 109.47269 * 59.99974 * 1 2 3 24 24 H 1.09001 * 109.47047 * 179.97438 * 1 2 3 25 25 H 0.97002 * 120.00779 * 179.97438 * 7 6 4 26 26 H 1.00897 * 110.99852 * 151.04971 * 12 2 1 27 27 H 1.09004 * 110.72543 * 259.23115 * 15 13 12 28 28 H 1.09006 * 110.72398 * 22.51426 * 15 13 12 29 29 H 1.09005 * 110.66757 * 204.15019 * 16 15 13 30 30 H 1.09002 * 110.66455 * 81.01827 * 16 15 13 31 31 H 1.08995 * 109.47126 * 302.60856 * 18 17 16 32 32 H 1.09000 * 109.47222 * 182.60260 * 18 17 16 33 33 H 1.09002 * 109.47084 * 62.60217 * 18 17 16 34 34 H 1.09003 * 109.46888 * 53.63830 * 21 19 17 35 35 H 1.09000 * 109.47128 * 173.63711 * 21 19 17 36 36 H 1.08998 * 109.47137 * 293.63593 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.8279 -2.5198 -4.0083 10 1 1.8277 -0.4192 -5.2205 11 1 3.8073 -1.1189 -4.0078 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2225 2.3468 14 1 1.2717 0.9492 2.2953 15 6 2.0107 -0.5718 3.6712 16 6 3.0182 0.1770 4.5794 17 7 4.1099 0.5473 3.6428 18 6 4.9138 1.6524 4.1818 19 6 3.4436 0.9421 2.3828 20 1 3.2935 2.0215 2.3645 21 6 4.2958 0.5142 1.1863 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7094 1.1619 -3.4844 26 1 2.9173 -1.1205 1.0287 27 1 1.0062 -0.5293 4.0924 28 1 2.3228 -1.6050 3.5187 29 1 3.3913 -0.4811 5.3643 30 1 2.5606 1.0684 5.0085 31 1 4.2682 2.5077 4.3811 32 1 5.6769 1.9342 3.4564 33 1 5.3926 1.3352 5.1082 34 1 4.5197 -0.5499 1.2617 35 1 3.7485 0.7059 0.2633 36 1 5.2263 1.0819 1.1814 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719643860.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:41 Heat of formation + Delta-G solvation = 10.618563 kcal Electronic energy + Delta-G solvation = -15060.537241 eV Core-core repulsion = 12772.684771 eV Total energy + Delta-G solvation = -2287.852470 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.23236 -35.46264 -32.70360 -31.13382 -30.15492 -27.34623 -25.51887 -24.58568 -24.44133 -20.81771 -20.12661 -18.73281 -16.67344 -15.75611 -15.05494 -14.70611 -14.41832 -13.81016 -13.60512 -12.94096 -12.79650 -12.36605 -11.98901 -11.77178 -11.27268 -11.20720 -11.09900 -10.86579 -10.84738 -10.68310 -10.49547 -10.17723 -10.08770 -10.05322 -9.76794 -8.79794 -8.45451 -8.22811 -7.18485 -6.01145 -4.07396 3.32349 3.36726 3.39846 4.23439 4.41585 4.95151 5.09493 5.26339 5.32858 5.47475 5.49835 5.60984 5.65973 5.81318 5.91984 5.98557 6.08825 6.12784 6.39647 6.40481 6.53420 6.58527 6.85404 6.96911 7.14926 7.17387 7.27109 7.33400 7.55993 7.80735 7.92835 8.30486 8.46717 8.73074 9.04777 9.58789 11.04989 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.045635 B = 0.008273 C = 0.007644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.419654 B = 3383.729820 C = 3661.921378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.212 3.788 3 H 0.003 0.997 4 C -0.516 4.516 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.682 5.682 13 C 0.085 3.915 14 H 0.073 0.927 15 C -0.112 4.112 16 C 0.032 3.968 17 N -0.517 5.517 18 C 0.018 3.982 19 C 0.036 3.964 20 H 0.043 0.957 21 C -0.146 4.146 22 H 0.002 0.998 23 H 0.079 0.921 24 H 0.031 0.969 25 H 0.261 0.739 26 H 0.340 0.660 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.038 0.962 31 H 0.023 0.977 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.088 0.912 36 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.272 1.032 10.681 11.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.104 3.896 3 H 0.021 0.979 4 C -0.555 4.555 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.723 3.277 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.315 5.315 13 C -0.028 4.028 14 H 0.091 0.909 15 C -0.151 4.151 16 C -0.096 4.096 17 N -0.242 5.242 18 C -0.131 4.131 19 C -0.074 4.074 20 H 0.061 0.939 21 C -0.204 4.204 22 H 0.021 0.979 23 H 0.098 0.902 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.161 0.839 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.056 0.944 31 H 0.041 0.959 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.107 0.893 36 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.931 0.465 10.588 11.303 hybrid contribution 0.569 0.968 -0.895 1.436 sum 4.500 1.433 9.692 10.782 Atomic orbital electron populations 1.21749 0.98191 0.99309 0.99182 1.19117 0.92303 0.92445 0.85707 0.97931 1.21216 1.31368 1.12479 0.90429 0.92308 1.24905 0.95045 0.94979 0.98986 1.69886 1.36639 1.22871 1.23514 0.86618 0.79110 0.79827 0.82191 1.20217 1.21376 1.20318 1.60824 1.33127 1.31841 1.05707 1.22379 0.93994 0.93795 0.92628 0.90858 1.22530 0.97787 1.00331 0.94412 1.23240 0.92010 0.98669 0.95649 1.64700 1.20491 1.35492 1.03494 1.22474 0.97945 0.92431 1.00228 1.23148 0.95739 0.98000 0.90536 0.93876 1.21949 0.99044 1.01405 0.97960 0.97886 0.90193 0.94995 0.92920 0.83866 0.91532 0.90248 0.90571 0.94362 0.95890 0.91636 0.91810 0.91888 0.89312 0.93982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 9.18 37.16 0.34 -2.81 16 2 C 0.21 5.26 1.33 -68.86 -0.09 5.17 16 3 H 0.00 0.08 6.74 -51.93 -0.35 -0.27 16 4 C -0.52 -13.93 8.20 -34.44 -0.28 -14.21 16 5 H 0.06 1.57 7.62 -52.49 -0.40 1.17 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.25 11.32 55.43 0.63 -24.63 16 8 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 12 N -0.68 -14.54 5.87 -99.53 -0.58 -15.13 16 13 C 0.08 1.55 3.08 -66.36 -0.20 1.35 16 14 H 0.07 1.43 7.19 -51.93 -0.37 1.06 16 15 C -0.11 -1.73 6.78 -24.87 -0.17 -1.90 16 16 C 0.03 0.44 6.56 -1.89 -0.01 0.43 16 17 N -0.52 -7.85 5.18 -230.77 -1.20 -9.05 16 18 C 0.02 0.23 9.40 60.06 0.56 0.80 16 19 C 0.04 0.62 3.01 -66.64 -0.20 0.42 16 20 H 0.04 0.76 7.73 -51.93 -0.40 0.35 16 21 C -0.15 -2.66 8.22 37.16 0.31 -2.36 16 22 H 0.00 0.05 7.47 -51.93 -0.39 -0.34 16 23 H 0.08 2.17 6.07 -51.93 -0.32 1.85 16 24 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 26 H 0.34 7.22 5.37 -39.29 -0.21 7.01 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.08 1.28 8.06 -51.93 -0.42 0.86 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.04 0.49 7.96 -51.93 -0.41 0.08 16 31 H 0.02 0.28 8.00 -51.93 -0.42 -0.14 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 1.15 6.83 -51.93 -0.35 0.80 16 35 H 0.09 1.90 5.14 -51.93 -0.27 1.63 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 275.62 15.07 4.15 4.15 Total: -1.00 -27.56 275.62 -7.84 -35.40 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -5.98 Total: 4.55 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: 0.16 Total: -11.48 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: -1.15 Total: -48.80 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -27.56 -7.84 -35.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719643860.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.017 kcal (2) G-P(sol) polarization free energy of solvation -27.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds