Wall clock time and date at job start Mon Mar 30 2020 02:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 109.47047 * 2 1 4 4 C 1.50703 * 109.46901 * 240.00118 * 2 1 3 5 5 H 1.07993 * 120.00014 * 240.00258 * 4 2 1 6 6 C 1.37870 * 119.99943 * 59.99720 * 4 2 1 7 7 N 1.31513 * 120.00345 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00080 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47297 * 60.00310 * 8 6 4 10 10 H 1.48503 * 109.47413 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47136 * 300.00358 * 8 6 4 12 12 N 1.46900 * 109.46914 * 120.00322 * 2 1 3 13 13 C 1.46901 * 110.99602 * 274.99673 * 12 2 1 14 14 H 1.08999 * 110.27572 * 34.12186 * 13 12 2 15 15 C 1.54594 * 110.30747 * 156.31601 * 13 12 2 16 16 C 1.54943 * 102.92371 * 140.87101 * 15 13 12 17 17 N 1.48536 * 103.22554 * 322.58674 * 16 15 13 18 18 C 1.46899 * 110.99873 * 159.71784 * 17 16 15 19 19 C 1.47903 * 105.81928 * 39.20446 * 17 16 15 20 20 H 1.09000 * 109.91635 * 94.02281 * 19 17 16 21 21 C 1.53002 * 109.91524 * 215.11639 * 19 17 16 22 22 H 1.09005 * 109.47031 * 299.99537 * 1 2 3 23 23 H 1.08996 * 109.47269 * 59.99974 * 1 2 3 24 24 H 1.09001 * 109.47047 * 179.97438 * 1 2 3 25 25 H 0.97002 * 120.00779 * 179.97438 * 7 6 4 26 26 H 1.00897 * 110.99852 * 151.04971 * 12 2 1 27 27 H 1.09004 * 110.72543 * 259.23115 * 15 13 12 28 28 H 1.09006 * 110.72398 * 22.51426 * 15 13 12 29 29 H 1.09005 * 110.66757 * 204.15019 * 16 15 13 30 30 H 1.09002 * 110.66455 * 81.01827 * 16 15 13 31 31 H 1.08995 * 109.47126 * 302.60856 * 18 17 16 32 32 H 1.09000 * 109.47222 * 182.60260 * 18 17 16 33 33 H 1.09002 * 109.47084 * 62.60217 * 18 17 16 34 34 H 1.09003 * 109.46888 * 53.63830 * 21 19 17 35 35 H 1.09000 * 109.47128 * 173.63711 * 21 19 17 36 36 H 1.08998 * 109.47137 * 293.63593 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.8279 -2.5198 -4.0083 10 1 1.8277 -0.4192 -5.2205 11 1 3.8073 -1.1189 -4.0078 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2225 2.3468 14 1 1.2717 0.9492 2.2953 15 6 2.0107 -0.5718 3.6712 16 6 3.0182 0.1770 4.5794 17 7 4.1099 0.5473 3.6428 18 6 4.9138 1.6524 4.1818 19 6 3.4436 0.9421 2.3828 20 1 3.2935 2.0215 2.3645 21 6 4.2958 0.5142 1.1863 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7094 1.1619 -3.4844 26 1 2.9173 -1.1205 1.0287 27 1 1.0062 -0.5293 4.0924 28 1 2.3228 -1.6050 3.5187 29 1 3.3913 -0.4811 5.3643 30 1 2.5606 1.0684 5.0085 31 1 4.2682 2.5077 4.3811 32 1 5.6769 1.9342 3.4564 33 1 5.3926 1.3352 5.1082 34 1 4.5197 -0.5499 1.2617 35 1 3.7485 0.7059 0.2633 36 1 5.2263 1.0819 1.1814 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719643860.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:40 Heat of formation + Delta-G solvation = -8.320301 kcal Electronic energy + Delta-G solvation = -15061.358492 eV Core-core repulsion = 12772.684771 eV Total energy + Delta-G solvation = -2288.673721 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.59931 -37.16545 -34.54237 -32.46084 -31.83728 -29.01307 -27.44163 -26.06721 -25.75979 -22.18599 -21.88407 -20.23581 -18.55338 -17.35875 -16.56957 -16.33623 -15.82946 -15.32777 -15.05150 -14.78251 -14.12608 -13.63357 -13.54408 -13.41453 -13.05914 -12.77566 -12.75108 -12.48123 -12.32491 -12.22864 -12.15738 -11.99658 -11.71382 -11.68245 -11.41365 -10.83606 -10.53858 -9.40145 -8.94932 -8.10520 -6.23522 1.43385 1.44750 1.52141 2.43170 3.05306 3.18441 3.54915 3.86594 3.89059 4.13705 4.33393 4.40235 4.51253 4.57433 4.66991 4.77129 4.83045 4.87424 4.94268 4.98036 5.03862 5.11421 5.20177 5.25529 5.29449 5.43431 5.54373 5.71995 5.89646 5.94334 6.14652 6.25771 6.56035 6.84187 7.06540 7.46746 8.94881 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.045635 B = 0.008273 C = 0.007644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.419654 B = 3383.729820 C = 3661.921378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.221 3.779 3 H -0.025 1.025 4 C -0.530 4.530 5 H 0.057 0.943 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.957 3.043 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.271 1.271 12 N -0.679 5.679 13 C 0.077 3.923 14 H 0.058 0.942 15 C -0.105 4.105 16 C 0.038 3.962 17 N -0.526 5.526 18 C 0.017 3.983 19 C 0.042 3.958 20 H 0.037 0.963 21 C -0.136 4.136 22 H 0.018 0.982 23 H 0.056 0.944 24 H 0.026 0.974 25 H 0.261 0.739 26 H 0.339 0.661 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.050 0.950 31 H 0.027 0.973 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.133 0.503 11.963 13.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.113 3.887 3 H -0.008 1.008 4 C -0.569 4.569 5 H 0.075 0.925 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.783 3.217 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.196 1.196 12 N -0.312 5.312 13 C -0.035 4.035 14 H 0.076 0.924 15 C -0.144 4.144 16 C -0.089 4.089 17 N -0.250 5.250 18 C -0.131 4.131 19 C -0.068 4.068 20 H 0.055 0.945 21 C -0.194 4.194 22 H 0.037 0.963 23 H 0.075 0.925 24 H 0.045 0.955 25 H 0.071 0.929 26 H 0.161 0.839 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.117 0.883 30 H 0.068 0.932 31 H 0.046 0.954 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.800 -0.067 11.897 12.829 hybrid contribution 0.311 1.160 -1.232 1.720 sum 5.111 1.092 10.665 11.877 Atomic orbital electron populations 1.21600 0.98362 0.98735 0.98802 1.18859 0.92039 0.90996 0.86789 1.00778 1.21507 1.31334 1.12473 0.91550 0.92519 1.25669 0.95238 0.95655 1.01852 1.70012 1.37589 1.24069 1.24078 0.85630 0.78767 0.78705 0.78639 1.19773 1.21074 1.19621 1.60777 1.33126 1.32188 1.05138 1.22474 0.94329 0.93770 0.92896 0.92367 1.22483 0.99311 0.99695 0.92900 1.23286 0.91045 0.99278 0.95302 1.64685 1.20844 1.36513 1.02987 1.22548 0.97662 0.91889 1.01043 1.22943 0.94972 0.97339 0.91571 0.94501 1.21782 0.99301 1.01437 0.96888 0.96273 0.92525 0.95453 0.92949 0.83928 0.90255 0.90766 0.88283 0.93171 0.95434 0.91770 0.89572 0.92111 0.92905 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.91 9.18 71.99 0.66 -5.25 16 2 C 0.22 11.25 1.33 44.17 0.06 11.31 16 3 H -0.03 -1.41 6.74 -2.39 -0.02 -1.43 16 4 C -0.53 -29.01 8.20 25.60 0.21 -28.80 16 5 H 0.06 3.05 7.62 -2.91 -0.02 3.03 16 6 C 0.02 0.83 5.30 84.65 0.45 1.28 16 7 N -0.92 -52.99 11.32 21.44 0.24 -52.75 16 8 Si 0.96 43.64 29.54 68.60 2.03 45.67 16 9 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 10 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 12 N -0.68 -29.09 5.87 -468.79 -2.75 -31.84 16 13 C 0.08 2.80 3.08 45.79 0.14 2.94 16 14 H 0.06 2.27 7.19 -2.39 -0.02 2.25 16 15 C -0.11 -3.04 6.78 31.80 0.22 -2.82 16 16 C 0.04 0.93 6.56 86.65 0.57 1.50 16 17 N -0.53 -14.69 5.18 -884.03 -4.58 -19.27 16 18 C 0.02 0.38 9.40 127.69 1.20 1.58 16 19 C 0.04 1.42 3.01 45.06 0.14 1.55 16 20 H 0.04 1.28 7.73 -2.39 -0.02 1.26 16 21 C -0.14 -4.96 8.22 71.98 0.59 -4.37 16 22 H 0.02 0.86 7.47 -2.38 -0.02 0.84 16 23 H 0.06 3.14 6.07 -2.39 -0.01 3.12 16 24 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 26 H 0.34 14.49 5.37 -89.70 -0.48 14.01 16 27 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.07 2.23 8.06 -2.38 -0.02 2.21 16 29 H 0.10 2.00 8.14 -2.38 -0.02 1.99 16 30 H 0.05 1.12 7.96 -2.39 -0.02 1.10 16 31 H 0.03 0.60 8.00 -2.39 -0.02 0.58 16 32 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.06 2.20 6.83 -2.39 -0.02 2.19 16 35 H 0.05 2.31 5.14 -2.39 -0.01 2.30 16 36 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -58.57 275.62 -0.27 -58.85 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 0.56 Total: 20.42 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: 4.23 Total: -21.08 kcal Atomic # 7 Polarization: -96.77 SS G_CDS: -7.09 Total: -103.86 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -58.57 -0.27 -58.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719643860.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.525 kcal (2) G-P(sol) polarization free energy of solvation -58.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds