Wall clock time and date at job start Mon Mar 30 2020 02:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.06367 * 2 1 4 4 C 1.53995 * 109.91565 * 238.79319 * 2 1 3 5 5 H 1.08993 * 110.39294 * 120.46493 * 4 2 1 6 6 N 1.46898 * 110.30890 * 358.33692 * 4 2 1 7 7 C 1.46896 * 110.99883 * 157.82985 * 6 4 2 8 8 C 1.53002 * 109.47243 * 179.97438 * 7 6 4 9 9 C 1.50706 * 109.46925 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00196 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99394 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99350 * 180.02562 * 11 9 8 13 13 Si 1.86789 * 120.00458 * 359.97438 * 11 9 8 14 14 H 1.48506 * 109.47200 * 90.00092 * 13 11 9 15 15 H 1.48505 * 109.47499 * 210.00153 * 13 11 9 16 16 H 1.48500 * 109.47262 * 330.00415 * 13 11 9 17 17 C 1.54601 * 105.13692 * 239.42408 * 4 2 1 18 18 C 1.54940 * 102.92265 * 338.04100 * 17 4 2 19 19 N 1.47905 * 109.91401 * 121.20353 * 2 1 3 20 20 C 1.46897 * 110.99845 * 265.19367 * 19 2 1 21 21 H 1.09005 * 109.47158 * 181.21163 * 1 2 3 22 22 H 1.09002 * 109.47178 * 301.20802 * 1 2 3 23 23 H 1.08992 * 109.47460 * 61.20842 * 1 2 3 24 24 H 1.00901 * 111.00121 * 281.78400 * 6 4 2 25 25 H 1.09004 * 109.47041 * 60.00069 * 7 6 4 26 26 H 1.09004 * 109.47535 * 300.00108 * 7 6 4 27 27 H 1.09000 * 109.46497 * 60.00307 * 8 7 6 28 28 H 1.09000 * 109.47312 * 300.00087 * 8 7 6 29 29 H 0.97005 * 119.99656 * 179.97438 * 12 11 9 30 30 H 1.08993 * 110.72938 * 96.40301 * 17 4 2 31 31 H 1.09000 * 110.72017 * 219.50919 * 17 4 2 32 32 H 1.09000 * 110.66738 * 155.84858 * 18 17 4 33 33 H 1.08999 * 110.66759 * 278.81899 * 18 17 4 34 34 H 1.09004 * 109.47584 * 302.73398 * 20 19 2 35 35 H 1.09003 * 109.47340 * 62.73525 * 20 19 2 36 36 H 1.09003 * 109.47353 * 182.73328 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0238 0.0000 4 6 2.0546 -0.7502 -1.2383 5 1 2.6709 -0.0906 -1.8491 6 7 0.9335 -1.2758 -2.0288 7 6 1.3377 -1.5159 -3.4206 8 6 0.1467 -2.0622 -4.2105 9 6 0.5615 -2.3090 -5.6382 10 1 1.5735 -2.0978 -5.9507 11 6 -0.3510 -2.8046 -6.5453 12 7 0.0112 -3.0205 -7.7910 13 14 -2.1011 -3.1705 -6.0046 14 1 -2.9415 -1.9612 -6.1961 15 1 -2.6473 -4.2867 -6.8177 16 1 -2.1060 -3.5546 -4.5701 17 6 2.9058 -1.9118 -0.6761 18 6 3.2681 -1.4185 0.7473 19 7 2.0338 -0.7204 1.1894 20 6 2.3211 0.2123 2.2873 21 1 -0.3634 -1.0275 0.0217 22 1 -0.3634 0.5325 0.8790 23 1 -0.3634 0.4949 -0.9005 24 1 0.5585 -2.1144 -1.6114 25 1 2.1513 -2.2410 -3.4427 26 1 1.6726 -0.5802 -3.8683 27 1 -0.6671 -1.3374 -4.1884 28 1 -0.1879 -2.9980 -3.7628 29 1 -0.6307 -3.3694 -8.4291 30 1 2.3214 -2.8306 -0.6288 31 1 3.8036 -2.0579 -1.2767 32 1 3.4888 -2.2615 1.4021 33 1 4.1116 -0.7290 0.7124 34 1 3.0411 0.9585 1.9511 35 1 1.3999 0.7083 2.5932 36 1 2.7356 -0.3376 3.1323 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719645551.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:22 Heat of formation + Delta-G solvation = 1.163895 kcal Electronic energy + Delta-G solvation = -14428.156769 eV Core-core repulsion = 12139.894314 eV Total energy + Delta-G solvation = -2288.262455 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.44781 -35.53964 -32.98335 -31.28579 -31.17142 -28.73852 -25.35888 -24.84767 -23.56885 -21.23485 -20.42918 -19.34846 -16.79614 -16.16181 -15.48588 -14.82800 -14.42069 -14.19797 -13.77133 -13.62428 -12.99323 -12.55675 -12.52602 -12.39543 -11.98928 -11.55409 -11.47790 -11.27847 -11.04120 -10.97215 -10.71240 -10.60051 -10.14103 -9.77251 -9.66655 -9.20768 -8.51905 -8.49855 -7.86032 -6.02829 -4.01043 3.34702 3.41459 3.46631 3.94810 4.48124 4.52074 4.67343 4.82508 5.15909 5.21496 5.25502 5.31998 5.35313 5.49614 5.57723 5.71355 5.77248 5.84964 5.92716 6.08408 6.13316 6.20921 6.23587 6.34637 6.70190 6.80010 6.87741 7.01950 7.17984 7.41954 7.64302 7.78348 7.94263 8.54952 9.01301 9.59806 11.10590 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.057053 B = 0.006098 C = 0.005757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.650196 B = 4590.465223 C = 4862.572428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.068 3.932 3 H 0.048 0.952 4 C 0.082 3.918 5 H 0.080 0.920 6 N -0.680 5.680 7 C 0.073 3.927 8 C -0.010 4.010 9 C -0.521 4.521 10 H 0.070 0.930 11 C 0.067 3.933 12 N -0.905 5.905 13 Si 0.883 3.117 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.265 1.265 17 C -0.154 4.154 18 C 0.037 3.963 19 N -0.520 5.520 20 C 0.018 3.982 21 H 0.060 0.940 22 H 0.035 0.965 23 H 0.069 0.931 24 H 0.339 0.661 25 H 0.021 0.979 26 H 0.062 0.938 27 H 0.021 0.979 28 H 0.013 0.987 29 H 0.263 0.737 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.042 0.958 34 H 0.024 0.976 35 H 0.067 0.933 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.296 4.917 18.104 19.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.040 4.040 3 H 0.066 0.934 4 C -0.030 4.030 5 H 0.098 0.902 6 N -0.310 5.310 7 C -0.055 4.055 8 C -0.047 4.047 9 C -0.559 4.559 10 H 0.088 0.912 11 C -0.134 4.134 12 N -0.544 5.544 13 Si 0.710 3.290 14 H -0.203 1.203 15 H -0.215 1.215 16 H -0.189 1.189 17 C -0.193 4.193 18 C -0.091 4.091 19 N -0.245 5.245 20 C -0.131 4.131 21 H 0.079 0.921 22 H 0.054 0.946 23 H 0.088 0.912 24 H 0.158 0.842 25 H 0.040 0.960 26 H 0.081 0.919 27 H 0.039 0.961 28 H 0.031 0.969 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.060 0.940 34 H 0.043 0.957 35 H 0.086 0.914 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.567 5.119 17.981 19.032 hybrid contribution 0.375 -0.418 -0.036 0.563 sum 3.941 4.701 17.944 18.964 Atomic orbital electron populations 1.21415 0.92809 1.02375 1.00370 1.22481 0.97598 0.95164 0.88804 0.93351 1.22389 0.91375 0.95479 0.93784 0.90165 1.60736 1.30665 1.36340 1.03254 1.21978 0.98239 0.99286 0.86036 1.19541 0.94133 0.95651 0.95419 1.21080 0.99211 1.43259 0.92381 0.91189 1.25009 0.98781 0.94935 0.94715 1.69921 1.35344 1.45833 1.03295 0.86728 0.84994 0.78128 0.79118 1.20251 1.21543 1.18946 1.23267 1.00946 0.99631 0.95498 1.23141 0.91384 0.98241 0.96367 1.64740 1.26136 1.26595 1.06997 1.22483 1.00578 0.95126 0.94898 0.92077 0.94606 0.91172 0.84185 0.96042 0.91926 0.96106 0.96881 0.92754 0.90569 0.91093 0.90369 0.93974 0.95696 0.91391 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 8.53 37.16 0.32 -1.17 16 2 C 0.07 0.88 3.09 -66.64 -0.21 0.67 16 3 H 0.05 0.61 7.69 -51.93 -0.40 0.21 16 4 C 0.08 1.15 3.27 -66.35 -0.22 0.93 16 5 H 0.08 1.16 7.86 -51.93 -0.41 0.75 16 6 N -0.68 -11.30 4.52 -105.29 -0.48 -11.77 16 7 C 0.07 1.46 5.46 -3.83 -0.02 1.44 16 8 C -0.01 -0.23 4.30 -27.88 -0.12 -0.35 16 9 C -0.52 -15.00 9.66 -34.44 -0.33 -15.34 16 10 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 11 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 12 N -0.90 -28.18 13.96 55.43 0.77 -27.41 16 13 Si 0.88 22.08 27.47 -169.99 -4.67 17.41 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 16 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 17 C -0.15 -1.94 6.65 -24.87 -0.17 -2.11 16 18 C 0.04 0.41 6.56 -1.89 -0.01 0.40 16 19 N -0.52 -6.24 5.18 -230.77 -1.20 -7.44 16 20 C 0.02 0.18 9.41 60.06 0.57 0.74 16 21 H 0.06 0.86 7.42 -51.93 -0.39 0.48 16 22 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 23 H 0.07 1.00 7.85 -51.93 -0.41 0.60 16 24 H 0.34 5.56 7.63 -39.29 -0.30 5.26 16 25 H 0.02 0.43 8.11 -51.93 -0.42 0.01 16 26 H 0.06 1.28 8.07 -51.93 -0.42 0.87 16 27 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 28 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 29 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 30 H 0.08 1.02 7.61 -51.93 -0.40 0.62 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.04 0.44 8.01 -51.93 -0.42 0.02 16 34 H 0.02 0.23 7.99 -51.93 -0.42 -0.18 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 284.30 15.07 4.28 4.28 Total: -1.00 -30.10 284.30 -8.01 -38.11 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -6.43 Total: -0.27 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: -0.29 Total: -12.91 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: -0.90 Total: -46.62 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.10 -8.01 -38.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719645551.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.272 kcal (2) G-P(sol) polarization free energy of solvation -30.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds