Wall clock time and date at job start Mon Mar 30 2020 02:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.06367 * 2 1 4 4 C 1.53995 * 109.91565 * 238.79319 * 2 1 3 5 5 H 1.08993 * 110.39294 * 120.46493 * 4 2 1 6 6 N 1.46898 * 110.30890 * 358.33692 * 4 2 1 7 7 C 1.46896 * 110.99883 * 157.82985 * 6 4 2 8 8 C 1.53002 * 109.47243 * 179.97438 * 7 6 4 9 9 C 1.50706 * 109.46925 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00196 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99394 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99350 * 180.02562 * 11 9 8 13 13 Si 1.86789 * 120.00458 * 359.97438 * 11 9 8 14 14 H 1.48506 * 109.47200 * 90.00092 * 13 11 9 15 15 H 1.48505 * 109.47499 * 210.00153 * 13 11 9 16 16 H 1.48500 * 109.47262 * 330.00415 * 13 11 9 17 17 C 1.54601 * 105.13692 * 239.42408 * 4 2 1 18 18 C 1.54940 * 102.92265 * 338.04100 * 17 4 2 19 19 N 1.47905 * 109.91401 * 121.20353 * 2 1 3 20 20 C 1.46897 * 110.99845 * 265.19367 * 19 2 1 21 21 H 1.09005 * 109.47158 * 181.21163 * 1 2 3 22 22 H 1.09002 * 109.47178 * 301.20802 * 1 2 3 23 23 H 1.08992 * 109.47460 * 61.20842 * 1 2 3 24 24 H 1.00901 * 111.00121 * 281.78400 * 6 4 2 25 25 H 1.09004 * 109.47041 * 60.00069 * 7 6 4 26 26 H 1.09004 * 109.47535 * 300.00108 * 7 6 4 27 27 H 1.09000 * 109.46497 * 60.00307 * 8 7 6 28 28 H 1.09000 * 109.47312 * 300.00087 * 8 7 6 29 29 H 0.97005 * 119.99656 * 179.97438 * 12 11 9 30 30 H 1.08993 * 110.72938 * 96.40301 * 17 4 2 31 31 H 1.09000 * 110.72017 * 219.50919 * 17 4 2 32 32 H 1.09000 * 110.66738 * 155.84858 * 18 17 4 33 33 H 1.08999 * 110.66759 * 278.81899 * 18 17 4 34 34 H 1.09004 * 109.47584 * 302.73398 * 20 19 2 35 35 H 1.09003 * 109.47340 * 62.73525 * 20 19 2 36 36 H 1.09003 * 109.47353 * 182.73328 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0238 0.0000 4 6 2.0546 -0.7502 -1.2383 5 1 2.6709 -0.0906 -1.8491 6 7 0.9335 -1.2758 -2.0288 7 6 1.3377 -1.5159 -3.4206 8 6 0.1467 -2.0622 -4.2105 9 6 0.5615 -2.3090 -5.6382 10 1 1.5735 -2.0978 -5.9507 11 6 -0.3510 -2.8046 -6.5453 12 7 0.0112 -3.0205 -7.7910 13 14 -2.1011 -3.1705 -6.0046 14 1 -2.9415 -1.9612 -6.1961 15 1 -2.6473 -4.2867 -6.8177 16 1 -2.1060 -3.5546 -4.5701 17 6 2.9058 -1.9118 -0.6761 18 6 3.2681 -1.4185 0.7473 19 7 2.0338 -0.7204 1.1894 20 6 2.3211 0.2123 2.2873 21 1 -0.3634 -1.0275 0.0217 22 1 -0.3634 0.5325 0.8790 23 1 -0.3634 0.4949 -0.9005 24 1 0.5585 -2.1144 -1.6114 25 1 2.1513 -2.2410 -3.4427 26 1 1.6726 -0.5802 -3.8683 27 1 -0.6671 -1.3374 -4.1884 28 1 -0.1879 -2.9980 -3.7628 29 1 -0.6307 -3.3694 -8.4291 30 1 2.3214 -2.8306 -0.6288 31 1 3.8036 -2.0579 -1.2767 32 1 3.4888 -2.2615 1.4021 33 1 4.1116 -0.7290 0.7124 34 1 3.0411 0.9585 1.9511 35 1 1.3999 0.7083 2.5932 36 1 2.7356 -0.3376 3.1323 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719645551.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:22 Heat of formation + Delta-G solvation = -19.981574 kcal Electronic energy + Delta-G solvation = -14429.073706 eV Core-core repulsion = 12139.894314 eV Total energy + Delta-G solvation = -2289.179392 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.48012 -36.96778 -34.94627 -32.81004 -32.21798 -30.28362 -26.67624 -25.76620 -25.19534 -22.30278 -22.19799 -20.44656 -18.94066 -17.29350 -16.61581 -16.26614 -15.98155 -15.50684 -15.11435 -14.90019 -14.56315 -14.06438 -13.68857 -13.44978 -13.36896 -13.06991 -12.89040 -12.51629 -12.30282 -12.10993 -11.96195 -11.85890 -11.68371 -11.67204 -11.40604 -11.32305 -10.76482 -9.38624 -9.22896 -8.29623 -6.34039 1.38474 1.39327 1.52265 2.37436 3.04510 3.06384 3.27024 3.68994 3.78299 4.15125 4.24552 4.35291 4.46600 4.53866 4.56196 4.59057 4.66137 4.79327 4.85607 4.94766 4.98151 5.01305 5.07947 5.14342 5.20998 5.32743 5.51446 5.61676 5.65500 5.95052 6.12299 6.21651 6.27048 6.53931 6.74836 7.31056 8.87171 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.057053 B = 0.006098 C = 0.005757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.650196 B = 4590.465223 C = 4862.572428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.073 3.927 3 H 0.054 0.946 4 C 0.077 3.923 5 H 0.075 0.925 6 N -0.675 5.675 7 C 0.088 3.912 8 C -0.004 4.004 9 C -0.534 4.534 10 H 0.031 0.969 11 C 0.006 3.994 12 N -0.952 5.952 13 Si 0.954 3.046 14 H -0.268 1.268 15 H -0.284 1.284 16 H -0.247 1.247 17 C -0.152 4.152 18 C 0.042 3.958 19 N -0.531 5.531 20 C 0.017 3.983 21 H 0.050 0.950 22 H 0.048 0.952 23 H 0.056 0.944 24 H 0.343 0.657 25 H 0.016 0.984 26 H 0.053 0.947 27 H 0.022 0.978 28 H 0.018 0.982 29 H 0.267 0.733 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.052 0.948 34 H 0.030 0.970 35 H 0.071 0.929 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.573 5.069 20.405 21.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.036 4.036 3 H 0.072 0.928 4 C -0.034 4.034 5 H 0.093 0.907 6 N -0.306 5.306 7 C -0.041 4.041 8 C -0.041 4.041 9 C -0.572 4.572 10 H 0.049 0.951 11 C -0.191 4.191 12 N -0.592 5.592 13 Si 0.778 3.222 14 H -0.193 1.193 15 H -0.210 1.210 16 H -0.170 1.170 17 C -0.191 4.191 18 C -0.086 4.086 19 N -0.256 5.256 20 C -0.131 4.131 21 H 0.069 0.931 22 H 0.067 0.933 23 H 0.075 0.925 24 H 0.162 0.838 25 H 0.034 0.966 26 H 0.072 0.928 27 H 0.040 0.960 28 H 0.037 0.963 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.070 0.930 34 H 0.049 0.951 35 H 0.090 0.910 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.861 5.281 20.313 21.182 hybrid contribution 0.697 -0.436 -0.758 1.118 sum 3.558 4.845 19.555 20.458 Atomic orbital electron populations 1.21337 0.93119 1.01699 1.00319 1.22392 0.97328 0.95294 0.88596 0.92789 1.22465 0.90829 0.96094 0.94021 0.90674 1.60651 1.31837 1.36375 1.01732 1.21623 0.96317 0.98366 0.87745 1.19426 0.95569 0.95999 0.93139 1.21423 0.97724 1.43009 0.95045 0.95064 1.25996 1.03853 0.94681 0.94584 1.70070 1.37252 1.47131 1.04792 0.85595 0.78768 0.78289 0.79572 1.19270 1.20992 1.17025 1.23209 1.00582 0.98650 0.96683 1.23141 0.91382 0.98752 0.95301 1.64738 1.26749 1.27165 1.06950 1.22542 1.01055 0.95069 0.94453 0.93051 0.93307 0.92509 0.83807 0.96593 0.92810 0.96009 0.96332 0.92454 0.91264 0.90921 0.89184 0.92966 0.95136 0.91030 0.90335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.64 8.53 71.98 0.61 -2.02 16 2 C 0.07 1.73 3.09 45.06 0.14 1.87 16 3 H 0.05 1.23 7.69 -2.39 -0.02 1.21 16 4 C 0.08 2.07 3.27 45.80 0.15 2.22 16 5 H 0.07 2.10 7.86 -2.39 -0.02 2.08 16 6 N -0.68 -21.70 4.52 -487.04 -2.20 -23.91 16 7 C 0.09 3.53 5.46 86.30 0.47 4.00 16 8 C 0.00 -0.17 4.30 29.85 0.13 -0.04 16 9 C -0.53 -31.30 9.66 25.60 0.25 -31.05 16 10 H 0.03 2.01 7.99 -2.91 -0.02 1.98 16 11 C 0.01 0.33 5.47 84.66 0.46 0.80 16 12 N -0.95 -60.43 13.96 21.45 0.30 -60.14 16 13 Si 0.95 45.09 27.47 68.60 1.88 46.97 16 14 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 15 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 16 H -0.25 -10.85 6.54 99.48 0.65 -10.20 16 17 C -0.15 -3.59 6.65 31.80 0.21 -3.38 16 18 C 0.04 0.83 6.56 86.65 0.57 1.40 16 19 N -0.53 -11.37 5.18 -884.04 -4.58 -15.95 16 20 C 0.02 0.28 9.41 127.69 1.20 1.49 16 21 H 0.05 1.36 7.42 -2.38 -0.02 1.34 16 22 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.06 1.55 7.85 -2.39 -0.02 1.53 16 24 H 0.34 10.73 7.63 -89.69 -0.68 10.04 16 25 H 0.02 0.64 8.11 -2.38 -0.02 0.62 16 26 H 0.05 2.22 8.07 -2.39 -0.02 2.20 16 27 H 0.02 1.03 7.57 -2.39 -0.02 1.01 16 28 H 0.02 0.86 7.20 -2.39 -0.02 0.84 16 29 H 0.27 15.75 8.31 -92.70 -0.77 14.98 16 30 H 0.07 1.74 7.61 -2.39 -0.02 1.72 16 31 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.05 0.94 8.01 -2.39 -0.02 0.92 16 34 H 0.03 0.47 7.99 -2.39 -0.02 0.46 16 35 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -64.31 284.30 -0.12 -64.43 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.29 Total: 13.31 kcal Atomic # 6 Polarization: -28.92 SS G_CDS: 4.19 Total: -24.72 kcal Atomic # 7 Polarization: -93.51 SS G_CDS: -6.49 Total: -99.99 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.88 Total: 46.97 kcal Total: -64.31 -0.12 -64.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719645551.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.450 kcal (2) G-P(sol) polarization free energy of solvation -64.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds