Wall clock time and date at job start Mon Mar 30 2020 02:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.06533 * 2 1 4 4 C 1.53995 * 109.91705 * 121.20250 * 2 1 3 5 5 H 1.08999 * 110.31069 * 239.49049 * 4 2 1 6 6 N 1.46902 * 110.31118 * 1.56534 * 4 2 1 7 7 C 1.46892 * 110.99911 * 195.19637 * 6 4 2 8 8 C 1.53006 * 109.46858 * 179.97438 * 7 6 4 9 9 C 1.50701 * 109.47001 * 180.02562 * 8 7 6 10 10 H 1.08004 * 120.00043 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00216 * 179.97438 * 9 8 7 12 12 N 1.31522 * 120.00085 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 120.00415 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46633 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47238 * 119.99989 * 13 11 9 16 16 H 1.48504 * 109.46817 * 240.00276 * 13 11 9 17 17 C 1.54606 * 105.13549 * 120.57750 * 4 2 1 18 18 C 1.54934 * 102.92152 * 21.95860 * 17 4 2 19 19 N 1.47900 * 109.91481 * 238.79474 * 2 1 3 20 20 C 1.46901 * 111.00026 * 94.80493 * 19 2 1 21 21 H 1.09000 * 109.47072 * 186.93632 * 1 2 3 22 22 H 1.09000 * 109.47126 * 306.93372 * 1 2 3 23 23 H 1.08995 * 109.47375 * 66.93422 * 1 2 3 24 24 H 1.00893 * 110.99502 * 319.15415 * 6 4 2 25 25 H 1.09003 * 109.47564 * 300.00135 * 7 6 4 26 26 H 1.09005 * 109.47359 * 60.00131 * 7 6 4 27 27 H 1.08996 * 109.46913 * 299.99837 * 8 7 6 28 28 H 1.08994 * 109.47176 * 60.00677 * 8 7 6 29 29 H 0.96995 * 120.00641 * 179.97438 * 12 11 9 30 30 H 1.09001 * 110.72255 * 263.59573 * 17 4 2 31 31 H 1.09005 * 110.71902 * 140.31463 * 17 4 2 32 32 H 1.08997 * 110.66914 * 204.14855 * 18 17 4 33 33 H 1.09003 * 110.66619 * 81.02170 * 18 17 4 34 34 H 1.08992 * 109.47224 * 177.26676 * 20 19 2 35 35 H 1.09001 * 109.46740 * 297.27148 * 20 19 2 36 36 H 1.09003 * 109.47172 * 57.26702 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0238 0.0000 4 6 2.0546 -0.7501 1.2384 5 1 2.6714 -0.0895 1.8477 6 7 0.9335 -1.2737 2.0302 7 6 1.3771 -1.6684 3.3738 8 6 0.1846 -2.2068 4.1669 9 6 0.6395 -2.6112 5.5455 10 1 1.6757 -2.4962 5.8277 11 6 -0.2670 -3.1281 6.4466 12 7 -1.5287 -3.2687 6.1030 13 14 0.2968 -3.6287 8.1558 14 1 1.7532 -3.3725 8.2914 15 1 -0.4422 -2.8378 9.1723 16 1 0.0277 -5.0746 8.3620 17 6 2.9059 -1.9117 0.6762 18 6 3.2681 -1.4185 -0.7472 19 7 2.0338 -0.7205 -1.1894 20 6 2.3211 0.2123 -2.2873 21 1 -0.3633 -1.0201 0.1241 22 1 -0.3633 0.6175 0.8214 23 1 -0.3634 0.4026 -0.9454 24 1 0.1817 -0.6027 2.0802 25 1 2.1392 -2.4435 3.2918 26 1 1.7938 -0.8023 3.8880 27 1 -0.5770 -1.4314 4.2489 28 1 -0.2324 -3.0729 3.6530 29 1 -2.1664 -3.6327 6.7367 30 1 2.3214 -2.8306 0.6290 31 1 3.8053 -2.0557 1.2750 32 1 3.4888 -2.2615 -1.4020 33 1 4.1098 -0.7267 -0.7121 34 1 2.7355 -0.3377 -3.1322 35 1 1.3999 0.7082 -2.5931 36 1 3.0411 0.9585 -1.9511 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719645554.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:24 Heat of formation + Delta-G solvation = -19.280615 kcal Electronic energy + Delta-G solvation = -14383.092481 eV Core-core repulsion = 12093.943485 eV Total energy + Delta-G solvation = -2289.148996 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.48108 -36.94767 -35.00031 -32.56200 -32.39192 -29.93619 -26.70342 -25.80301 -25.46728 -22.66177 -21.80159 -20.36578 -18.47127 -17.19483 -16.88096 -16.37064 -16.29239 -15.58673 -15.17022 -14.83371 -14.28965 -13.94573 -13.62797 -13.35757 -13.28936 -12.90982 -12.72873 -12.49301 -12.35526 -12.22962 -12.08902 -12.04882 -11.76327 -11.59227 -11.34732 -11.15898 -10.56725 -9.41894 -9.21033 -8.20023 -6.31650 1.40443 1.41132 1.54365 2.40769 3.03564 3.13420 3.33173 3.57827 3.83611 4.17108 4.28494 4.36334 4.49283 4.49778 4.54692 4.61510 4.67566 4.75248 4.86064 4.90172 5.00722 5.01904 5.06765 5.12496 5.28456 5.45651 5.49427 5.68198 5.79638 5.95244 6.13188 6.18384 6.32705 6.56916 6.85825 7.37775 8.92418 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.067088 B = 0.005563 C = 0.005293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.259466 B = 5031.765504 C = 5288.307790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.069 3.931 3 H 0.060 0.940 4 C 0.074 3.926 5 H 0.041 0.959 6 N -0.684 5.684 7 C 0.084 3.916 8 C 0.033 3.967 9 C -0.544 4.544 10 H 0.059 0.941 11 C 0.001 3.999 12 N -0.932 5.932 13 Si 0.967 3.033 14 H -0.262 1.262 15 H -0.277 1.277 16 H -0.278 1.278 17 C -0.115 4.115 18 C 0.043 3.957 19 N -0.530 5.530 20 C 0.017 3.983 21 H 0.058 0.942 22 H 0.057 0.943 23 H 0.063 0.937 24 H 0.341 0.659 25 H 0.056 0.944 26 H 0.015 0.985 27 H -0.009 1.009 28 H -0.006 1.006 29 H 0.264 0.736 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.055 0.945 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.002 7.432 -13.758 18.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.039 4.039 3 H 0.078 0.922 4 C -0.037 4.037 5 H 0.059 0.941 6 N -0.318 5.318 7 C -0.044 4.044 8 C -0.005 4.005 9 C -0.582 4.582 10 H 0.078 0.922 11 C -0.197 4.197 12 N -0.572 5.572 13 Si 0.792 3.208 14 H -0.186 1.186 15 H -0.203 1.203 16 H -0.203 1.203 17 C -0.153 4.153 18 C -0.085 4.085 19 N -0.255 5.255 20 C -0.131 4.131 21 H 0.077 0.923 22 H 0.076 0.924 23 H 0.082 0.918 24 H 0.163 0.837 25 H 0.074 0.926 26 H 0.034 0.966 27 H 0.009 0.991 28 H 0.012 0.988 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 8.505 6.399 -14.168 17.720 hybrid contribution 0.554 1.048 1.684 2.060 sum 9.059 7.447 -12.483 17.128 Atomic orbital electron populations 1.21618 0.93702 1.02423 1.01235 1.22439 0.96973 0.95340 0.89188 0.92227 1.22437 0.92077 0.95355 0.93838 0.94072 1.60819 1.10132 1.46130 1.14681 1.21786 0.97752 0.97593 0.87315 1.18910 0.93280 0.94704 0.93599 1.21638 0.95401 1.42140 0.99065 0.92237 1.25975 0.94879 0.95562 1.03271 1.70117 1.03589 1.46355 1.37131 0.85366 0.78802 0.77929 0.78725 1.18593 1.20256 1.20340 1.22541 0.98774 0.98322 0.95691 1.23195 0.91179 0.98745 0.95397 1.64667 1.27105 1.27016 1.06737 1.22562 1.01093 0.95060 0.94428 0.92279 0.92396 0.91816 0.83746 0.92550 0.96640 0.99075 0.98798 0.92731 0.91605 0.90932 0.89085 0.92643 0.90260 0.90995 0.94940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 8.24 71.98 0.59 -2.80 16 2 C 0.07 1.74 3.09 45.06 0.14 1.88 16 3 H 0.06 1.35 7.69 -2.39 -0.02 1.33 16 4 C 0.07 2.18 3.27 45.80 0.15 2.33 16 5 H 0.04 1.21 7.97 -2.39 -0.02 1.20 16 6 N -0.68 -25.06 5.26 -487.01 -2.56 -27.62 16 7 C 0.08 3.66 5.46 86.31 0.47 4.13 16 8 C 0.03 1.78 5.23 29.85 0.16 1.93 16 9 C -0.54 -31.61 9.11 25.60 0.23 -31.38 16 10 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 11 C 0.00 0.06 5.46 84.65 0.46 0.52 16 12 N -0.93 -57.61 13.29 21.45 0.28 -57.33 16 13 Si 0.97 44.71 29.54 68.60 2.03 46.74 16 14 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 15 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 16 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 17 C -0.11 -3.16 6.34 31.80 0.20 -2.96 16 18 C 0.04 0.93 6.56 86.65 0.57 1.50 16 19 N -0.53 -12.50 5.18 -884.07 -4.58 -17.09 16 20 C 0.02 0.29 9.41 127.69 1.20 1.50 16 21 H 0.06 1.82 7.33 -2.39 -0.02 1.81 16 22 H 0.06 1.43 7.20 -2.39 -0.02 1.41 16 23 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.34 12.19 6.16 -89.70 -0.55 11.64 16 25 H 0.06 2.44 7.84 -2.39 -0.02 2.42 16 26 H 0.02 0.66 8.10 -2.38 -0.02 0.64 16 27 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 28 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 29 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 30 H 0.07 2.12 8.06 -2.39 -0.02 2.10 16 31 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.06 1.05 8.00 -2.39 -0.02 1.03 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 36 H 0.03 0.52 7.99 -2.39 -0.02 0.50 16 Total: -1.00 -64.52 286.16 -0.19 -64.71 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.47 Total: 13.93 kcal Atomic # 6 Polarization: -27.52 SS G_CDS: 4.18 Total: -23.34 kcal Atomic # 7 Polarization: -95.18 SS G_CDS: -6.86 Total: -102.04 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -64.52 -0.19 -64.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719645554.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.425 kcal (2) G-P(sol) polarization free energy of solvation -64.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds