Wall clock time and date at job start Mon Mar 30 2020 02:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 110.46308 * 2 1 4 4 C 1.54382 * 110.41155 * 237.57942 * 2 1 3 5 5 H 1.09001 * 110.32146 * 336.37728 * 4 2 1 6 6 N 1.46901 * 110.31949 * 98.47272 * 4 2 1 7 7 C 1.46896 * 110.99830 * 203.57424 * 6 4 2 8 8 C 1.52998 * 109.47029 * 180.02562 * 7 6 4 9 9 C 1.50706 * 109.47348 * 180.02562 * 8 7 6 10 10 H 1.08005 * 119.99758 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00102 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00217 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99766 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47057 * 179.97438 * 13 11 9 15 15 H 1.48500 * 109.47389 * 300.00068 * 13 11 9 16 16 H 1.48504 * 109.47102 * 60.00417 * 13 11 9 17 17 C 1.54257 * 105.15172 * 217.42409 * 4 2 1 18 18 C 1.54377 * 105.05933 * 359.95069 * 17 4 2 19 19 N 1.48556 * 104.59947 * 23.84963 * 18 17 4 20 20 C 1.46901 * 111.00590 * 200.96006 * 19 18 17 21 21 H 1.08997 * 109.47879 * 182.41916 * 1 2 3 22 22 H 1.09004 * 109.47104 * 302.41806 * 1 2 3 23 23 H 1.09000 * 109.47227 * 62.41176 * 1 2 3 24 24 H 1.00899 * 110.99889 * 79.62353 * 6 4 2 25 25 H 1.09000 * 109.47274 * 60.00618 * 7 6 4 26 26 H 1.09002 * 109.47154 * 300.00125 * 7 6 4 27 27 H 1.09001 * 109.47671 * 60.00253 * 8 7 6 28 28 H 1.09006 * 109.47297 * 299.99972 * 8 7 6 29 29 H 0.97001 * 119.99646 * 359.97438 * 12 11 9 30 30 H 1.08997 * 110.32203 * 118.84455 * 17 4 2 31 31 H 1.09005 * 110.32216 * 241.05931 * 17 4 2 32 32 H 1.09002 * 110.41354 * 142.63523 * 18 17 4 33 33 H 1.09008 * 110.41143 * 264.95305 * 18 17 4 34 34 H 1.08997 * 109.46937 * 59.87411 * 20 19 18 35 35 H 1.08998 * 109.47080 * 179.87817 * 20 19 18 36 36 H 1.09002 * 109.46806 * 299.87826 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0684 -0.7757 -1.2214 5 1 1.3227 -1.4868 -1.5770 6 7 2.4365 0.1561 -2.2957 7 6 2.4108 -0.5120 -3.6037 8 6 2.7994 0.4878 -4.6947 9 6 2.7725 -0.1973 -6.0367 10 1 2.5053 -1.2416 -6.1046 11 6 3.0889 0.5089 -7.1778 12 7 3.4147 1.7804 -7.0951 13 14 3.0561 -0.3406 -8.8411 14 1 3.4320 0.6302 -9.9002 15 1 4.0204 -1.4699 -8.8393 16 1 1.6893 -0.8571 -9.1063 17 6 3.3172 -1.5210 -0.7071 18 6 3.4309 -1.1328 0.7827 19 7 2.0510 -0.7474 1.1755 20 6 2.0623 0.0998 2.3756 21 1 -0.3635 -1.0267 0.0434 22 1 -0.3633 0.5509 0.8675 23 1 -0.3634 0.4759 -0.9108 24 1 3.3387 0.5723 -2.1199 25 1 1.4076 -0.8910 -3.7985 26 1 3.1186 -1.3409 -3.6023 27 1 3.8028 0.8666 -4.4999 28 1 2.0920 1.3171 -4.6963 29 1 3.4320 2.2214 -6.2313 30 1 3.1838 -2.5980 -0.8086 31 1 4.2035 -1.1954 -1.2518 32 1 3.7703 -1.9843 1.3726 33 1 4.1121 -0.2907 0.9053 34 1 2.6365 1.0046 2.1762 35 1 1.0398 0.3692 2.6399 36 1 2.5193 -0.4459 3.2012 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719645561.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:30 Heat of formation + Delta-G solvation = -11.472964 kcal Electronic energy + Delta-G solvation = -14325.658761 eV Core-core repulsion = 12036.848330 eV Total energy + Delta-G solvation = -2288.810431 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.38178 -35.57867 -33.29520 -31.33197 -31.05385 -28.29067 -25.08727 -24.91267 -23.28767 -21.19955 -20.66549 -19.93607 -16.76006 -15.74398 -15.66491 -14.91313 -14.42225 -13.97667 -13.71161 -13.60069 -13.18977 -12.92278 -12.52810 -12.13191 -11.78625 -11.57712 -11.46247 -11.34790 -11.14472 -10.89079 -10.80539 -10.54518 -10.15085 -10.10993 -9.70186 -8.60882 -8.54047 -8.31341 -7.89695 -6.34779 -4.03602 3.44899 3.47164 3.65833 3.89909 4.50432 4.60433 4.63820 4.94604 5.05760 5.23230 5.29796 5.35716 5.43283 5.46993 5.53836 5.69914 5.71364 5.82638 5.87183 6.01168 6.04883 6.15559 6.23133 6.31476 6.37650 6.73732 6.83028 6.98355 7.28574 7.50254 7.69401 7.84751 8.25566 8.47839 8.90204 9.68937 11.06343 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.063037 B = 0.005395 C = 0.005296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.073648 B = 5189.134005 C = 5286.054432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.068 3.932 3 H 0.059 0.941 4 C 0.088 3.912 5 H 0.085 0.915 6 N -0.686 5.686 7 C 0.074 3.926 8 C 0.012 3.988 9 C -0.603 4.603 10 H 0.048 0.952 11 C 0.015 3.985 12 N -0.913 5.913 13 Si 1.069 2.931 14 H -0.282 1.282 15 H -0.289 1.289 16 H -0.288 1.288 17 C -0.155 4.155 18 C 0.035 3.965 19 N -0.516 5.516 20 C 0.015 3.985 21 H 0.058 0.942 22 H 0.048 0.952 23 H 0.066 0.934 24 H 0.335 0.665 25 H 0.060 0.940 26 H 0.018 0.982 27 H 0.003 0.997 28 H 0.016 0.984 29 H 0.269 0.731 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.042 0.958 34 H 0.027 0.973 35 H 0.068 0.932 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.843 -4.616 16.116 16.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.041 4.041 3 H 0.077 0.923 4 C -0.024 4.024 5 H 0.103 0.897 6 N -0.316 5.316 7 C -0.054 4.054 8 C -0.025 4.025 9 C -0.642 4.642 10 H 0.066 0.934 11 C -0.188 4.188 12 N -0.549 5.549 13 Si 0.898 3.102 14 H -0.208 1.208 15 H -0.215 1.215 16 H -0.214 1.214 17 C -0.195 4.195 18 C -0.093 4.093 19 N -0.241 5.241 20 C -0.134 4.134 21 H 0.078 0.922 22 H 0.067 0.933 23 H 0.085 0.915 24 H 0.153 0.847 25 H 0.079 0.921 26 H 0.036 0.964 27 H 0.022 0.978 28 H 0.034 0.966 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.060 0.940 34 H 0.045 0.955 35 H 0.087 0.913 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.573 -4.570 14.554 15.470 hybrid contribution 1.139 -0.113 1.660 2.016 sum -1.434 -4.683 16.214 16.938 Atomic orbital electron populations 1.21633 0.93638 1.01989 1.01513 1.22694 0.96212 0.96100 0.89088 0.92328 1.22339 0.95899 0.92953 0.91205 0.89681 1.60626 1.35524 1.33202 1.02199 1.22015 0.99738 0.96406 0.87203 1.19203 0.95597 0.94854 0.92891 1.21994 1.51304 0.98251 0.92622 0.93414 1.25840 0.93678 0.95936 1.03392 1.70774 1.44913 1.10523 1.28661 0.83541 0.76455 0.75019 0.75220 1.20753 1.21511 1.21420 1.23093 0.99328 1.01718 0.95390 1.23034 0.90076 0.99988 0.96180 1.65362 1.17825 1.37450 1.03416 1.22483 1.01902 0.95504 0.93481 0.92244 0.93317 0.91530 0.84741 0.92127 0.96396 0.97840 0.96565 0.92047 0.91017 0.91175 0.90453 0.93989 0.95476 0.91294 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 9.32 37.16 0.35 -1.29 16 2 C 0.07 0.91 2.61 -65.98 -0.17 0.74 16 3 H 0.06 0.85 7.82 -51.93 -0.41 0.44 16 4 C 0.09 1.32 2.92 -66.33 -0.19 1.13 16 5 H 0.08 1.35 7.55 -51.93 -0.39 0.96 16 6 N -0.69 -12.25 6.24 -105.27 -0.66 -12.90 16 7 C 0.07 1.59 5.47 -3.83 -0.02 1.57 16 8 C 0.01 0.31 4.54 -27.88 -0.13 0.19 16 9 C -0.60 -17.49 9.11 -34.44 -0.31 -17.80 16 10 H 0.05 1.36 7.74 -52.48 -0.41 0.95 16 11 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 12 N -0.91 -28.41 13.65 55.43 0.76 -27.65 16 13 Si 1.07 25.58 29.90 -169.99 -5.08 20.50 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 17 C -0.16 -2.07 6.63 -25.35 -0.17 -2.24 16 18 C 0.04 0.42 6.49 -2.19 -0.01 0.40 16 19 N -0.52 -6.38 5.34 -230.21 -1.23 -7.61 16 20 C 0.02 0.16 9.43 60.07 0.57 0.72 16 21 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 22 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 23 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.33 5.82 8.19 -39.29 -0.32 5.50 16 25 H 0.06 1.32 8.07 -51.93 -0.42 0.90 16 26 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.00 0.09 8.01 -51.93 -0.42 -0.32 16 28 H 0.02 0.45 8.01 -51.93 -0.42 0.03 16 29 H 0.27 8.37 7.22 -40.82 -0.29 8.08 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.97 7.61 -51.93 -0.40 0.57 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.04 0.48 7.97 -51.92 -0.41 0.07 16 34 H 0.03 0.27 7.98 -51.93 -0.41 -0.14 16 35 H 0.07 0.65 7.63 -51.93 -0.40 0.26 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 288.77 15.07 4.35 4.35 Total: -1.00 -30.49 288.77 -8.48 -38.97 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -6.42 Total: 0.58 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: -0.19 Total: -16.23 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: -1.13 Total: -48.16 kcal Atomic # 14 Polarization: 25.58 SS G_CDS: -5.08 Total: 20.50 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.49 -8.48 -38.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719645561.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.500 kcal (2) G-P(sol) polarization free energy of solvation -30.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds