Wall clock time and date at job start Mon Mar 30 2020 02:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 110.46308 * 2 1 4 4 C 1.54382 * 110.41155 * 237.57942 * 2 1 3 5 5 H 1.09001 * 110.32146 * 336.37728 * 4 2 1 6 6 N 1.46901 * 110.31949 * 98.47272 * 4 2 1 7 7 C 1.46896 * 110.99830 * 203.57424 * 6 4 2 8 8 C 1.52998 * 109.47029 * 180.02562 * 7 6 4 9 9 C 1.50706 * 109.47348 * 180.02562 * 8 7 6 10 10 H 1.08005 * 119.99758 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00102 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00217 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99766 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47057 * 179.97438 * 13 11 9 15 15 H 1.48500 * 109.47389 * 300.00068 * 13 11 9 16 16 H 1.48504 * 109.47102 * 60.00417 * 13 11 9 17 17 C 1.54257 * 105.15172 * 217.42409 * 4 2 1 18 18 C 1.54377 * 105.05933 * 359.95069 * 17 4 2 19 19 N 1.48556 * 104.59947 * 23.84963 * 18 17 4 20 20 C 1.46901 * 111.00590 * 200.96006 * 19 18 17 21 21 H 1.08997 * 109.47879 * 182.41916 * 1 2 3 22 22 H 1.09004 * 109.47104 * 302.41806 * 1 2 3 23 23 H 1.09000 * 109.47227 * 62.41176 * 1 2 3 24 24 H 1.00899 * 110.99889 * 79.62353 * 6 4 2 25 25 H 1.09000 * 109.47274 * 60.00618 * 7 6 4 26 26 H 1.09002 * 109.47154 * 300.00125 * 7 6 4 27 27 H 1.09001 * 109.47671 * 60.00253 * 8 7 6 28 28 H 1.09006 * 109.47297 * 299.99972 * 8 7 6 29 29 H 0.97001 * 119.99646 * 359.97438 * 12 11 9 30 30 H 1.08997 * 110.32203 * 118.84455 * 17 4 2 31 31 H 1.09005 * 110.32216 * 241.05931 * 17 4 2 32 32 H 1.09002 * 110.41354 * 142.63523 * 18 17 4 33 33 H 1.09008 * 110.41143 * 264.95305 * 18 17 4 34 34 H 1.08997 * 109.46937 * 59.87411 * 20 19 18 35 35 H 1.08998 * 109.47080 * 179.87817 * 20 19 18 36 36 H 1.09002 * 109.46806 * 299.87826 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0684 -0.7757 -1.2214 5 1 1.3227 -1.4868 -1.5770 6 7 2.4365 0.1561 -2.2957 7 6 2.4108 -0.5120 -3.6037 8 6 2.7994 0.4878 -4.6947 9 6 2.7725 -0.1973 -6.0367 10 1 2.5053 -1.2416 -6.1046 11 6 3.0889 0.5089 -7.1778 12 7 3.4147 1.7804 -7.0951 13 14 3.0561 -0.3406 -8.8411 14 1 3.4320 0.6302 -9.9002 15 1 4.0204 -1.4699 -8.8393 16 1 1.6893 -0.8571 -9.1063 17 6 3.3172 -1.5210 -0.7071 18 6 3.4309 -1.1328 0.7827 19 7 2.0510 -0.7474 1.1755 20 6 2.0623 0.0998 2.3756 21 1 -0.3635 -1.0267 0.0434 22 1 -0.3633 0.5509 0.8675 23 1 -0.3634 0.4759 -0.9108 24 1 3.3387 0.5723 -2.1199 25 1 1.4076 -0.8910 -3.7985 26 1 3.1186 -1.3409 -3.6023 27 1 3.8028 0.8666 -4.4999 28 1 2.0920 1.3171 -4.6963 29 1 3.4320 2.2214 -6.2313 30 1 3.1838 -2.5980 -0.8086 31 1 4.2035 -1.1954 -1.2518 32 1 3.7703 -1.9843 1.3726 33 1 4.1121 -0.2907 0.9053 34 1 2.6365 1.0046 2.1762 35 1 1.0398 0.3692 2.6399 36 1 2.5193 -0.4459 3.2012 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719645561.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:30 Heat of formation + Delta-G solvation = -33.193291 kcal Electronic energy + Delta-G solvation = -14326.600625 eV Core-core repulsion = 12036.848330 eV Total energy + Delta-G solvation = -2289.752295 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.48069 -37.16210 -35.26030 -32.51947 -32.34839 -29.96780 -26.47242 -25.98709 -25.03729 -22.97149 -21.82459 -21.12186 -18.91955 -16.95545 -16.91187 -16.04374 -15.67804 -15.62282 -15.51066 -14.80168 -14.65667 -14.18658 -13.88548 -13.60037 -13.38410 -12.91228 -12.74474 -12.50387 -12.42265 -12.26071 -12.06573 -11.96742 -11.92103 -11.78243 -11.49828 -10.73654 -10.55632 -9.53509 -9.36960 -8.70777 -6.41298 1.52890 1.61656 1.81099 2.56020 2.86839 3.15159 3.32154 3.56397 3.78722 4.02114 4.19584 4.28296 4.35926 4.43745 4.48102 4.53550 4.54448 4.70415 4.80787 4.84089 4.86576 4.95260 5.00159 5.01763 5.08400 5.23519 5.33798 5.41439 5.72130 5.91793 6.04628 6.14832 6.18500 6.38254 6.57467 7.41461 8.70453 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.063037 B = 0.005395 C = 0.005296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.073648 B = 5189.134005 C = 5286.054432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.072 3.928 3 H 0.049 0.951 4 C 0.084 3.916 5 H 0.077 0.923 6 N -0.688 5.688 7 C 0.094 3.906 8 C 0.016 3.984 9 C -0.621 4.621 10 H 0.051 0.949 11 C -0.038 4.038 12 N -0.936 5.936 13 Si 1.120 2.880 14 H -0.283 1.283 15 H -0.268 1.268 16 H -0.268 1.268 17 C -0.153 4.153 18 C 0.039 3.961 19 N -0.521 5.521 20 C 0.014 3.986 21 H 0.060 0.940 22 H 0.064 0.936 23 H 0.052 0.948 24 H 0.337 0.663 25 H 0.056 0.944 26 H 0.020 0.980 27 H -0.012 1.012 28 H -0.009 1.009 29 H 0.255 0.745 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.045 0.955 34 H 0.026 0.974 35 H 0.075 0.925 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.960 -5.902 16.941 18.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.037 4.037 3 H 0.067 0.933 4 C -0.026 4.026 5 H 0.096 0.904 6 N -0.318 5.318 7 C -0.035 4.035 8 C -0.022 4.022 9 C -0.660 4.660 10 H 0.070 0.930 11 C -0.235 4.235 12 N -0.574 5.574 13 Si 0.940 3.060 14 H -0.208 1.208 15 H -0.193 1.193 16 H -0.194 1.194 17 C -0.193 4.193 18 C -0.089 4.089 19 N -0.245 5.245 20 C -0.135 4.135 21 H 0.080 0.920 22 H 0.083 0.917 23 H 0.071 0.929 24 H 0.155 0.845 25 H 0.075 0.925 26 H 0.038 0.962 27 H 0.006 0.994 28 H 0.009 0.991 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.113 0.887 33 H 0.064 0.936 34 H 0.045 0.955 35 H 0.094 0.906 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.694 -5.864 15.427 16.722 hybrid contribution 1.171 0.307 1.486 1.916 sum -1.523 -5.557 16.912 17.867 Atomic orbital electron populations 1.21586 0.92977 1.02213 1.01583 1.22598 0.96731 0.95382 0.88995 0.93328 1.22401 0.96674 0.92736 0.90834 0.90438 1.60533 1.35798 1.33861 1.01612 1.21618 0.99229 0.94982 0.87622 1.19098 0.94010 0.95024 0.94022 1.22434 1.50876 0.98659 0.93995 0.93019 1.27484 0.92512 0.95776 1.07755 1.70915 1.46897 1.11724 1.27831 0.82913 0.77943 0.74572 0.70551 1.20827 1.19290 1.19354 1.23035 0.97956 1.01747 0.96520 1.23055 0.89996 1.00764 0.95095 1.65388 1.18061 1.37653 1.03437 1.22561 1.02619 0.95409 0.92872 0.92048 0.91722 0.92860 0.84450 0.92514 0.96203 0.99399 0.99079 0.93589 0.90467 0.91809 0.88749 0.93639 0.95517 0.90583 0.89997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 9.32 71.98 0.67 -2.34 16 2 C 0.07 1.85 2.61 45.03 0.12 1.97 16 3 H 0.05 1.36 7.82 -2.39 -0.02 1.34 16 4 C 0.08 2.47 2.92 45.81 0.13 2.61 16 5 H 0.08 2.40 7.55 -2.39 -0.02 2.38 16 6 N -0.69 -24.59 6.24 -486.96 -3.04 -27.63 16 7 C 0.09 4.05 5.47 86.30 0.47 4.52 16 8 C 0.02 0.85 4.54 29.85 0.14 0.99 16 9 C -0.62 -36.27 9.11 25.60 0.23 -36.04 16 10 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 11 C -0.04 -2.23 5.46 84.65 0.46 -1.77 16 12 N -0.94 -59.23 13.65 21.45 0.29 -58.94 16 13 Si 1.12 50.68 29.90 68.60 2.05 52.73 16 14 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 15 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 16 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 17 C -0.15 -3.86 6.63 31.49 0.21 -3.65 16 18 C 0.04 0.83 6.49 86.45 0.56 1.39 16 19 N -0.52 -11.71 5.34 -882.26 -4.71 -16.42 16 20 C 0.01 0.25 9.43 127.69 1.20 1.45 16 21 H 0.06 1.43 8.14 -2.39 -0.02 1.42 16 22 H 0.06 1.32 7.66 -2.38 -0.02 1.30 16 23 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.34 11.78 8.19 -89.69 -0.73 11.04 16 25 H 0.06 2.47 8.07 -2.39 -0.02 2.45 16 26 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 27 H -0.01 -0.69 8.01 -2.39 -0.02 -0.71 16 28 H -0.01 -0.53 8.01 -2.38 -0.02 -0.55 16 29 H 0.25 16.38 7.22 -92.71 -0.67 15.71 16 30 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.06 1.69 7.61 -2.38 -0.02 1.67 16 32 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.05 0.95 7.97 -2.38 -0.02 0.93 16 34 H 0.03 0.48 7.98 -2.39 -0.02 0.46 16 35 H 0.08 1.25 7.63 -2.39 -0.02 1.23 16 36 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -64.88 288.77 -0.82 -65.70 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.39 Total: 15.43 kcal Atomic # 6 Polarization: -35.07 SS G_CDS: 4.20 Total: -30.87 kcal Atomic # 7 Polarization: -95.53 SS G_CDS: -7.46 Total: -102.99 kcal Atomic # 14 Polarization: 50.68 SS G_CDS: 2.05 Total: 52.73 kcal Total: -64.88 -0.82 -65.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719645561.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.505 kcal (2) G-P(sol) polarization free energy of solvation -64.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds