Wall clock time and date at job start Mon Mar 30 2020 03:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47596 * 2 1 4 4 C 1.50703 * 109.47206 * 239.99888 * 2 1 3 5 5 H 1.07997 * 120.00268 * 240.00609 * 4 2 1 6 6 C 1.37879 * 119.99836 * 60.00058 * 4 2 1 7 7 N 1.31519 * 119.99832 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99820 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47404 * 90.00427 * 8 6 4 10 10 H 1.48502 * 109.47058 * 210.00033 * 8 6 4 11 11 H 1.48503 * 109.47369 * 329.99885 * 8 6 4 12 12 N 1.46902 * 109.47080 * 120.00261 * 2 1 3 13 13 C 1.48064 * 111.16437 * 177.60257 * 12 2 1 14 14 C 1.53988 * 107.14543 * 145.63064 * 13 12 2 15 15 C 1.54593 * 105.13853 * 358.91767 * 14 13 12 16 16 H 1.09001 * 110.73014 * 96.40304 * 15 14 13 17 17 C 1.53008 * 110.72605 * 219.68418 * 15 14 13 18 18 C 1.53001 * 109.47140 * 288.50176 * 17 15 14 19 19 N 1.46892 * 109.47308 * 179.97438 * 18 17 15 20 20 C 1.48537 * 110.99943 * 294.99574 * 12 2 1 21 21 H 1.09006 * 109.46674 * 299.99929 * 1 2 3 22 22 H 1.08999 * 109.46988 * 59.99612 * 1 2 3 23 23 H 1.08996 * 109.47596 * 180.02562 * 1 2 3 24 24 H 0.97001 * 119.99317 * 179.97438 * 7 6 4 25 25 H 1.09006 * 109.75798 * 26.31855 * 13 12 2 26 26 H 1.09000 * 109.99508 * 265.08007 * 13 12 2 27 27 H 1.09005 * 110.31083 * 240.00088 * 14 13 12 28 28 H 1.08997 * 110.31160 * 117.83271 * 14 13 12 29 29 H 1.08999 * 109.46706 * 48.49825 * 17 15 14 30 30 H 1.08993 * 109.47151 * 168.50304 * 17 15 14 31 31 H 1.09005 * 109.46805 * 300.00132 * 18 17 15 32 32 H 1.09008 * 109.46742 * 59.99628 * 18 17 15 33 33 H 1.00895 * 111.00344 * 179.97438 * 19 18 17 34 34 H 1.00899 * 111.00205 * 303.95549 * 19 18 17 35 35 H 1.09002 * 110.66696 * 81.84409 * 20 12 2 36 36 H 1.09001 * 110.66368 * 318.88248 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.3427 -2.1616 -4.4119 10 1 2.4866 -0.1414 -5.1123 11 1 3.6293 -1.7584 -3.7122 12 7 2.0196 -0.6926 1.1994 13 6 3.4985 -0.7647 1.2088 14 6 3.9491 -0.6534 2.6770 15 6 2.6438 -0.4868 3.4885 16 1 2.3105 -1.4462 3.8843 17 6 2.8334 0.5294 4.6165 18 6 3.7250 -0.0751 5.7030 19 7 3.9075 0.9007 6.7857 20 6 1.6446 0.0472 2.4316 21 1 -0.3633 0.5139 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 0.7095 1.1618 -3.4844 25 1 3.9114 0.0616 0.6300 26 1 3.8279 -1.7157 0.7903 27 1 4.5914 0.2172 2.8107 28 1 4.4712 -1.5601 2.9823 29 1 3.3035 1.4291 4.2196 30 1 1.8632 0.7842 5.0428 31 1 3.2548 -0.9750 6.0998 32 1 4.6953 -0.3300 5.2766 33 1 4.4929 0.5248 7.5165 34 1 4.2826 1.7678 6.4316 35 1 0.6191 -0.1824 2.7211 36 1 1.7718 1.1205 2.2897 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723678599.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:24 Heat of formation + Delta-G solvation = -11.268505 kcal Electronic energy + Delta-G solvation = -14569.136606 eV Core-core repulsion = 12280.335042 eV Total energy + Delta-G solvation = -2288.801565 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.59280 -35.64499 -33.65260 -31.56973 -29.67848 -27.77104 -26.25388 -24.85508 -22.02708 -21.32541 -19.66171 -19.26429 -16.16260 -15.83338 -15.64698 -15.27077 -14.55486 -13.85916 -13.75780 -13.04100 -12.97740 -12.36081 -12.23923 -11.75067 -11.57710 -11.26653 -11.03874 -10.89416 -10.62193 -10.42244 -10.25154 -10.17354 -10.07245 -9.87470 -9.71309 -8.84744 -8.81833 -8.40885 -7.20655 -5.98809 -4.03251 3.32087 3.38192 3.41587 4.39082 4.45499 4.91009 4.97822 5.16402 5.29659 5.36758 5.46361 5.50054 5.72595 5.88775 5.92262 6.02624 6.17382 6.28280 6.30599 6.49563 6.64821 6.74782 6.77658 6.89155 6.98069 7.10748 7.14571 7.26773 7.52995 7.69427 7.86032 8.19717 8.36623 8.60220 9.03587 9.61834 11.08098 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.061111 B = 0.006498 C = 0.006122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.074610 B = 4308.224205 C = 4572.840404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.204 3.796 3 H -0.001 1.001 4 C -0.502 4.502 5 H 0.061 0.939 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.514 5.514 13 C 0.052 3.948 14 C -0.127 4.127 15 C -0.091 4.091 16 H 0.077 0.923 17 C -0.108 4.108 18 C 0.061 3.939 19 N -0.855 5.855 20 C 0.042 3.958 21 H 0.006 0.994 22 H 0.084 0.916 23 H 0.033 0.967 24 H 0.260 0.740 25 H 0.042 0.958 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.027 0.973 33 H 0.338 0.662 34 H 0.339 0.661 35 H 0.070 0.930 36 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.366 -0.568 12.555 13.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.098 3.902 3 H 0.016 0.984 4 C -0.541 4.541 5 H 0.079 0.921 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.200 1.200 12 N -0.239 5.239 13 C -0.076 4.076 14 C -0.165 4.165 15 C -0.110 4.110 16 H 0.096 0.904 17 C -0.146 4.146 18 C -0.069 4.069 19 N -0.384 5.384 20 C -0.086 4.086 21 H 0.025 0.975 22 H 0.102 0.898 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.060 0.940 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.045 0.955 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.088 0.912 36 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 4.258 -1.028 12.457 13.205 hybrid contribution 1.650 0.366 -1.224 2.086 sum 5.908 -0.662 11.233 12.709 Atomic orbital electron populations 1.21769 0.97639 0.99572 0.99820 1.19429 0.92556 0.91909 0.86347 0.98393 1.21142 1.30900 1.12223 0.89839 0.92091 1.24940 0.95254 0.95074 0.99019 1.69901 1.37072 1.23032 1.23344 0.86523 0.79214 0.79309 0.82504 1.20654 1.21349 1.19974 1.64860 1.08125 1.48386 1.02508 1.22588 0.90094 1.01192 0.93727 1.22550 0.96907 1.00680 0.96408 1.22070 0.95923 0.98606 0.94437 0.90412 1.21575 1.00199 0.98125 0.94685 1.21835 0.98278 0.95266 0.91539 1.58734 1.58029 1.07676 1.13930 1.23147 0.98352 0.95935 0.91190 0.97489 0.89755 0.94753 0.93028 0.93960 0.91474 0.92496 0.92146 0.92319 0.91234 0.91161 0.95485 0.85036 0.84893 0.91168 0.94847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 8.94 37.16 0.33 -2.95 16 2 C 0.20 5.31 1.75 -68.86 -0.12 5.19 16 3 H 0.00 -0.04 8.00 -51.93 -0.42 -0.46 16 4 C -0.50 -14.07 8.02 -34.44 -0.28 -14.34 16 5 H 0.06 1.71 7.13 -52.49 -0.37 1.33 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.88 11.32 55.43 0.63 -25.26 16 8 Si 0.90 21.61 29.54 -169.99 -5.02 16.58 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.51 -11.46 5.10 -223.74 -1.14 -12.60 16 13 C 0.05 1.05 5.63 -2.67 -0.02 1.04 16 14 C -0.13 -1.97 5.91 -25.38 -0.15 -2.12 16 15 C -0.09 -1.36 3.04 -88.76 -0.27 -1.63 16 16 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 17 C -0.11 -1.37 4.88 -26.73 -0.13 -1.50 16 18 C 0.06 0.67 6.68 -3.83 -0.03 0.64 16 19 N -0.85 -8.32 9.62 -10.37 -0.10 -8.41 16 20 C 0.04 0.79 5.05 -1.90 -0.01 0.78 16 21 H 0.01 0.14 7.07 -51.93 -0.37 -0.23 16 22 H 0.08 2.31 6.07 -51.93 -0.32 2.00 16 23 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 25 H 0.04 0.92 7.70 -51.93 -0.40 0.52 16 26 H 0.07 1.36 7.85 -51.93 -0.41 0.96 16 27 H 0.06 0.82 7.72 -51.93 -0.40 0.42 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.76 7.95 -51.93 -0.41 0.35 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.03 0.29 7.69 -51.92 -0.40 -0.11 16 33 H 0.34 2.63 9.08 -39.29 -0.36 2.27 16 34 H 0.34 2.98 8.99 -39.29 -0.35 2.62 16 35 H 0.07 1.29 7.69 -51.93 -0.40 0.89 16 36 H 0.03 0.65 7.83 -51.93 -0.41 0.24 16 LS Contribution 281.90 15.07 4.25 4.25 Total: -1.00 -29.27 281.90 -8.40 -37.67 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -6.26 Total: 1.13 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -0.76 Total: -13.36 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: -0.61 Total: -46.27 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.27 -8.40 -37.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723678599.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.401 kcal (2) G-P(sol) polarization free energy of solvation -29.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds