Wall clock time and date at job start Mon Mar 30 2020 03:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47596 * 2 1 4 4 C 1.50703 * 109.47206 * 239.99888 * 2 1 3 5 5 H 1.07997 * 120.00268 * 240.00609 * 4 2 1 6 6 C 1.37879 * 119.99836 * 60.00058 * 4 2 1 7 7 N 1.31519 * 119.99832 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99820 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47404 * 90.00427 * 8 6 4 10 10 H 1.48502 * 109.47058 * 210.00033 * 8 6 4 11 11 H 1.48503 * 109.47369 * 329.99885 * 8 6 4 12 12 N 1.46902 * 109.47080 * 120.00261 * 2 1 3 13 13 C 1.48064 * 111.16437 * 177.60257 * 12 2 1 14 14 C 1.53988 * 107.14543 * 145.63064 * 13 12 2 15 15 C 1.54593 * 105.13853 * 358.91767 * 14 13 12 16 16 H 1.09001 * 110.73014 * 96.40304 * 15 14 13 17 17 C 1.53008 * 110.72605 * 219.68418 * 15 14 13 18 18 C 1.53001 * 109.47140 * 288.50176 * 17 15 14 19 19 N 1.46892 * 109.47308 * 179.97438 * 18 17 15 20 20 C 1.48537 * 110.99943 * 294.99574 * 12 2 1 21 21 H 1.09006 * 109.46674 * 299.99929 * 1 2 3 22 22 H 1.08999 * 109.46988 * 59.99612 * 1 2 3 23 23 H 1.08996 * 109.47596 * 180.02562 * 1 2 3 24 24 H 0.97001 * 119.99317 * 179.97438 * 7 6 4 25 25 H 1.09006 * 109.75798 * 26.31855 * 13 12 2 26 26 H 1.09000 * 109.99508 * 265.08007 * 13 12 2 27 27 H 1.09005 * 110.31083 * 240.00088 * 14 13 12 28 28 H 1.08997 * 110.31160 * 117.83271 * 14 13 12 29 29 H 1.08999 * 109.46706 * 48.49825 * 17 15 14 30 30 H 1.08993 * 109.47151 * 168.50304 * 17 15 14 31 31 H 1.09005 * 109.46805 * 300.00132 * 18 17 15 32 32 H 1.09008 * 109.46742 * 59.99628 * 18 17 15 33 33 H 1.00895 * 111.00344 * 179.97438 * 19 18 17 34 34 H 1.00899 * 111.00205 * 303.95549 * 19 18 17 35 35 H 1.09002 * 110.66696 * 81.84409 * 20 12 2 36 36 H 1.09001 * 110.66368 * 318.88248 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 1.3427 -2.1616 -4.4119 10 1 2.4866 -0.1414 -5.1123 11 1 3.6293 -1.7584 -3.7122 12 7 2.0196 -0.6926 1.1994 13 6 3.4985 -0.7647 1.2088 14 6 3.9491 -0.6534 2.6770 15 6 2.6438 -0.4868 3.4885 16 1 2.3105 -1.4462 3.8843 17 6 2.8334 0.5294 4.6165 18 6 3.7250 -0.0751 5.7030 19 7 3.9075 0.9007 6.7857 20 6 1.6446 0.0472 2.4316 21 1 -0.3633 0.5139 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 0.7095 1.1618 -3.4844 25 1 3.9114 0.0616 0.6300 26 1 3.8279 -1.7157 0.7903 27 1 4.5914 0.2172 2.8107 28 1 4.4712 -1.5601 2.9823 29 1 3.3035 1.4291 4.2196 30 1 1.8632 0.7842 5.0428 31 1 3.2548 -0.9750 6.0998 32 1 4.6953 -0.3300 5.2766 33 1 4.4929 0.5248 7.5165 34 1 4.2826 1.7678 6.4316 35 1 0.6191 -0.1824 2.7211 36 1 1.7718 1.1205 2.2897 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723678599.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:23 Heat of formation + Delta-G solvation = -32.526470 kcal Electronic energy + Delta-G solvation = -14570.058421 eV Core-core repulsion = 12280.335042 eV Total energy + Delta-G solvation = -2289.723379 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.10586 -36.90289 -35.31273 -33.26003 -31.17578 -29.44284 -27.76164 -26.76770 -23.19055 -22.92522 -21.20926 -20.84781 -18.23239 -17.21647 -16.86536 -16.54690 -16.05579 -15.30083 -15.21844 -14.63070 -14.56236 -13.98863 -13.54517 -13.23751 -13.16553 -13.00712 -12.78921 -12.56426 -12.29015 -12.16774 -12.03073 -11.72697 -11.45735 -11.43150 -11.37439 -10.91049 -10.54930 -9.57164 -9.03757 -8.13621 -6.26112 1.40429 1.41495 1.51784 2.40759 3.14193 3.36720 3.60678 3.83629 3.92913 4.09391 4.29542 4.44677 4.50232 4.66028 4.74404 4.77183 4.85321 4.88235 4.92243 4.99934 5.04133 5.12272 5.17406 5.27783 5.35808 5.44574 5.49911 5.70054 5.75079 6.20885 6.25908 6.35621 6.62941 6.65158 6.88223 7.43470 8.92657 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.061111 B = 0.006498 C = 0.006122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.074610 B = 4308.224205 C = 4572.840404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.209 3.791 3 H -0.039 1.039 4 C -0.521 4.521 5 H 0.055 0.945 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.962 3.038 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.269 1.269 12 N -0.526 5.526 13 C 0.049 3.951 14 C -0.115 4.115 15 C -0.077 4.077 16 H 0.087 0.913 17 C -0.099 4.099 18 C 0.067 3.933 19 N -0.862 5.862 20 C 0.038 3.962 21 H 0.026 0.974 22 H 0.060 0.940 23 H 0.030 0.970 24 H 0.262 0.738 25 H 0.016 0.984 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.034 0.966 33 H 0.350 0.650 34 H 0.345 0.655 35 H 0.072 0.928 36 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.281 -1.421 13.756 15.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.102 3.898 3 H -0.022 1.022 4 C -0.559 4.559 5 H 0.073 0.927 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.787 3.213 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.193 1.193 12 N -0.250 5.250 13 C -0.079 4.079 14 C -0.153 4.153 15 C -0.097 4.097 16 H 0.106 0.894 17 C -0.138 4.138 18 C -0.064 4.064 19 N -0.392 5.392 20 C -0.090 4.090 21 H 0.045 0.955 22 H 0.078 0.922 23 H 0.050 0.950 24 H 0.071 0.929 25 H 0.034 0.966 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.104 0.896 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.052 0.948 33 H 0.164 0.836 34 H 0.157 0.843 35 H 0.091 0.909 36 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 5.182 -1.885 13.684 14.754 hybrid contribution 1.349 0.661 -1.566 2.170 sum 6.531 -1.224 12.118 13.821 Atomic orbital electron populations 1.21589 0.97289 0.99153 0.99607 1.19221 0.92824 0.90011 0.87788 1.02154 1.21392 1.31179 1.12262 0.91095 0.92681 1.25752 0.95333 0.95752 1.02011 1.70028 1.37807 1.24161 1.24108 0.85492 0.78849 0.78247 0.78663 1.20003 1.20762 1.19329 1.64766 1.09625 1.48256 1.02350 1.22620 0.88776 0.99718 0.96803 1.22489 0.97394 1.02564 0.92855 1.21993 0.94211 0.99499 0.93958 0.89443 1.21470 1.00625 0.97310 0.94357 1.21721 0.98066 0.95363 0.91227 1.58689 1.58761 1.07829 1.13959 1.23242 0.99754 0.95120 0.90900 0.95458 0.92154 0.95046 0.92874 0.96585 0.92125 0.91198 0.89649 0.92612 0.91523 0.90855 0.94806 0.83639 0.84289 0.90936 0.95997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.08 8.94 71.98 0.64 -5.44 16 2 C 0.21 11.18 1.75 44.17 0.08 11.25 16 3 H -0.04 -2.32 8.00 -2.39 -0.02 -2.34 16 4 C -0.52 -29.74 8.02 25.60 0.21 -29.53 16 5 H 0.05 3.13 7.13 -2.91 -0.02 3.11 16 6 C 0.01 0.57 5.30 84.65 0.45 1.02 16 7 N -0.92 -54.33 11.32 21.45 0.24 -54.08 16 8 Si 0.96 44.52 29.54 68.60 2.03 46.55 16 9 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 11 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 12 N -0.53 -23.57 5.10 -861.79 -4.40 -27.97 16 13 C 0.05 1.97 5.63 86.41 0.49 2.46 16 14 C -0.12 -3.32 5.91 31.47 0.19 -3.13 16 15 C -0.08 -2.15 3.04 -9.59 -0.03 -2.18 16 16 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 17 C -0.10 -2.28 4.88 30.60 0.15 -2.13 16 18 C 0.07 1.25 6.68 86.31 0.58 1.82 16 19 N -0.86 -14.37 9.62 -186.72 -1.80 -16.16 16 20 C 0.04 1.40 5.05 86.65 0.44 1.84 16 21 H 0.03 1.23 7.07 -2.38 -0.02 1.22 16 22 H 0.06 3.39 6.07 -2.39 -0.01 3.37 16 23 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.26 14.63 8.31 -92.71 -0.77 13.85 16 25 H 0.02 0.71 7.70 -2.38 -0.02 0.69 16 26 H 0.06 2.46 7.85 -2.39 -0.02 2.44 16 27 H 0.07 1.85 7.72 -2.38 -0.02 1.84 16 28 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.06 1.32 7.95 -2.39 -0.02 1.30 16 30 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.03 0.59 7.69 -2.38 -0.02 0.58 16 33 H 0.35 4.45 9.08 -89.70 -0.81 3.64 16 34 H 0.34 5.17 8.99 -89.69 -0.81 4.36 16 35 H 0.07 2.61 7.69 -2.39 -0.02 2.59 16 36 H 0.02 0.85 7.83 -2.39 -0.02 0.84 16 Total: -1.00 -63.12 281.90 -1.31 -64.43 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -0.57 Total: 11.26 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: 3.18 Total: -24.02 kcal Atomic # 7 Polarization: -92.26 SS G_CDS: -5.95 Total: -98.21 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -63.12 -1.31 -64.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723678599.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.905 kcal (2) G-P(sol) polarization free energy of solvation -63.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds