Wall clock time and date at job start Mon Mar 30 2020 03:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.47156 * 2 1 4 4 C 1.50698 * 109.47351 * 120.00694 * 2 1 3 5 5 H 1.07998 * 120.00421 * 116.94973 * 4 2 1 6 6 C 1.37880 * 119.99510 * 296.95494 * 4 2 1 7 7 N 1.31514 * 119.99705 * 160.97616 * 6 4 2 8 8 Si 1.86796 * 120.00376 * 340.97221 * 6 4 2 9 9 H 1.48498 * 109.47298 * 274.59086 * 8 6 4 10 10 H 1.48506 * 109.46978 * 34.58828 * 8 6 4 11 11 H 1.48497 * 109.47159 * 154.58944 * 8 6 4 12 12 N 1.46901 * 109.46687 * 240.00665 * 2 1 3 13 13 C 1.48531 * 111.00525 * 59.53761 * 12 2 1 14 14 C 1.54933 * 103.22915 * 159.71801 * 13 12 2 15 15 C 1.54593 * 102.92131 * 322.58534 * 14 13 12 16 16 H 1.09005 * 110.30734 * 263.04143 * 15 14 13 17 17 C 1.52996 * 110.30782 * 140.87664 * 15 14 13 18 18 C 1.52999 * 109.47428 * 69.28154 * 17 15 14 19 19 N 1.46905 * 109.47219 * 179.97438 * 18 17 15 20 20 C 1.47908 * 110.99782 * 176.93245 * 12 2 1 21 21 H 1.08997 * 109.46957 * 293.99692 * 1 2 3 22 22 H 1.08998 * 109.46938 * 53.99617 * 1 2 3 23 23 H 1.09003 * 109.46629 * 174.00001 * 1 2 3 24 24 H 0.96997 * 120.00107 * 179.97438 * 7 6 4 25 25 H 1.09000 * 110.66176 * 278.15243 * 13 12 2 26 26 H 1.08995 * 110.66739 * 41.27903 * 13 12 2 27 27 H 1.09004 * 110.72042 * 204.22626 * 14 13 12 28 28 H 1.09002 * 110.87843 * 81.01343 * 14 13 12 29 29 H 1.09005 * 109.47050 * 189.28080 * 17 15 14 30 30 H 1.09004 * 109.47151 * 309.27622 * 17 15 14 31 31 H 1.08997 * 109.47165 * 300.00248 * 18 17 15 32 32 H 1.08999 * 109.47058 * 59.99948 * 18 17 15 33 33 H 1.00902 * 110.99789 * 56.04457 * 19 18 17 34 34 H 1.00903 * 110.99752 * 179.97438 * 19 18 17 35 35 H 1.09001 * 109.91412 * 333.50921 * 20 12 2 36 36 H 1.08995 * 109.91821 * 94.80017 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6121 -1.6165 1.1320 6 6 1.7519 -0.2040 2.4817 7 7 1.8471 -0.9779 3.5407 8 14 1.2368 1.5813 2.6728 9 1 2.4461 2.4385 2.7628 10 1 0.4260 1.9910 1.4980 11 1 0.4289 1.7337 3.9094 12 7 2.0196 -0.6924 -1.1996 13 6 1.5343 -0.0253 -2.4347 14 6 2.5258 -0.5196 -3.5177 15 6 3.8736 -0.5565 -2.7614 16 1 4.4399 0.3550 -2.9528 17 6 4.6843 -1.7844 -3.1807 18 6 5.1545 -1.6157 -4.6268 19 7 5.9335 -2.7945 -5.0292 20 6 3.4963 -0.6485 -1.2713 21 1 -0.3633 0.4179 0.9388 22 1 -0.3633 0.6041 -0.8314 23 1 -0.3633 -1.0221 -0.1074 24 1 1.6501 -0.6216 4.4211 25 1 0.5183 -0.3429 -2.6695 26 1 1.5856 1.0586 -2.3321 27 1 2.5696 0.1829 -4.3500 28 1 2.2532 -1.5149 -3.8688 29 1 5.5503 -1.8887 -2.5269 30 1 4.0610 -2.6753 -3.1028 31 1 4.2887 -1.5115 -5.2806 32 1 5.7778 -0.7250 -4.7046 33 1 5.3987 -3.6410 -4.9045 34 1 6.2553 -2.7074 -5.9815 35 1 3.8680 0.2273 -0.7394 36 1 3.9163 -1.5557 -0.8372 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723678600.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:26 Heat of formation + Delta-G solvation = -4.716922 kcal Electronic energy + Delta-G solvation = -14654.714540 eV Core-core repulsion = 12366.197073 eV Total energy + Delta-G solvation = -2288.517467 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.75481 -35.69379 -33.64212 -31.79161 -29.73579 -28.56965 -26.04508 -24.91418 -21.93638 -21.56853 -19.69170 -19.30893 -16.65730 -15.88800 -15.48214 -15.20360 -14.56164 -14.32898 -13.68822 -12.99409 -12.85379 -12.47736 -12.38503 -12.18580 -11.84062 -11.68649 -11.14860 -10.89217 -10.71938 -10.41458 -10.34020 -10.26783 -10.14356 -10.02062 -9.49474 -9.13583 -8.78627 -8.39454 -7.37300 -6.08501 -3.99266 3.28624 3.37702 3.40161 4.43884 4.45994 4.85649 4.99960 5.04776 5.15935 5.23289 5.40357 5.54051 5.67848 5.83420 5.85832 5.91442 6.19703 6.25120 6.33313 6.34775 6.40014 6.51204 6.60269 6.64129 6.68501 6.85651 6.93196 7.02863 7.30211 7.31241 7.70068 7.96102 8.06484 8.67894 9.05444 9.59101 11.04695 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.047229 B = 0.007367 C = 0.006854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.717984 B = 3800.062236 C = 4084.064016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.179 3.821 3 H -0.009 1.009 4 C -0.511 4.511 5 H 0.078 0.922 6 C 0.077 3.923 7 N -0.888 5.888 8 Si 0.859 3.141 9 H -0.280 1.280 10 H -0.258 1.258 11 H -0.288 1.288 12 N -0.501 5.501 13 C 0.031 3.969 14 C -0.116 4.116 15 C -0.101 4.101 16 H 0.067 0.933 17 C -0.105 4.105 18 C 0.061 3.939 19 N -0.854 5.854 20 C 0.058 3.942 21 H 0.050 0.950 22 H 0.019 0.981 23 H 0.054 0.946 24 H 0.263 0.737 25 H 0.072 0.928 26 H 0.032 0.968 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.026 0.974 32 H 0.067 0.933 33 H 0.340 0.660 34 H 0.337 0.663 35 H 0.042 0.958 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.827 1.308 -15.189 15.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.071 3.929 3 H 0.009 0.991 4 C -0.549 4.549 5 H 0.096 0.904 6 C -0.126 4.126 7 N -0.526 5.526 8 Si 0.686 3.314 9 H -0.206 1.206 10 H -0.182 1.182 11 H -0.214 1.214 12 N -0.226 5.226 13 C -0.097 4.097 14 C -0.154 4.154 15 C -0.121 4.121 16 H 0.085 0.915 17 C -0.143 4.143 18 C -0.070 4.070 19 N -0.383 5.383 20 C -0.070 4.070 21 H 0.068 0.932 22 H 0.038 0.962 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.090 0.910 26 H 0.050 0.950 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.152 0.848 34 H 0.148 0.852 35 H 0.060 0.940 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.107 0.979 -14.335 14.701 hybrid contribution -0.761 1.755 -0.391 1.953 sum 2.345 2.734 -14.726 15.161 Atomic orbital electron populations 1.22148 0.98037 1.00478 0.98896 1.19775 0.92042 0.91854 0.89187 0.99111 1.20857 1.34790 1.11274 0.87959 0.90352 1.24861 0.94720 0.97105 0.95890 1.70009 1.48740 1.34820 0.98998 0.87284 0.78979 0.87199 0.77910 1.20629 1.18222 1.21391 1.64755 1.05969 1.50504 1.01356 1.23185 0.98728 0.96272 0.91552 1.22557 0.94850 1.01002 0.97027 1.22071 0.95841 0.97694 0.96463 0.91461 1.21614 0.99694 0.98009 0.95010 1.21854 0.95296 0.93299 0.96519 1.58739 1.45360 1.05093 1.29106 1.22669 0.89776 1.01603 0.92983 0.93158 0.96158 0.92660 0.92718 0.90974 0.94960 0.92309 0.91259 0.91180 0.91648 0.95616 0.91451 0.84756 0.85151 0.93985 0.90586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.22 37.16 0.31 -2.82 16 2 C 0.18 4.35 1.31 -68.86 -0.09 4.26 16 3 H -0.01 -0.21 6.74 -51.93 -0.35 -0.56 16 4 C -0.51 -14.51 8.53 -34.44 -0.29 -14.80 16 5 H 0.08 2.44 7.79 -52.49 -0.41 2.03 16 6 C 0.08 2.22 5.27 -17.82 -0.09 2.12 16 7 N -0.89 -27.19 13.96 55.43 0.77 -26.41 16 8 Si 0.86 21.38 25.86 -169.99 -4.40 16.99 16 9 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 10 H -0.26 -6.09 5.65 56.52 0.32 -5.77 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 N -0.50 -10.65 5.10 -223.89 -1.14 -11.80 16 13 C 0.03 0.54 5.42 -1.90 -0.01 0.53 16 14 C -0.12 -1.64 5.87 -24.87 -0.15 -1.79 16 15 C -0.10 -1.50 3.00 -89.27 -0.27 -1.76 16 16 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 17 C -0.11 -1.39 4.63 -26.73 -0.12 -1.52 16 18 C 0.06 0.67 6.66 -3.82 -0.03 0.64 16 19 N -0.85 -8.61 9.62 -10.37 -0.10 -8.71 16 20 C 0.06 1.12 5.50 -2.75 -0.02 1.11 16 21 H 0.05 1.18 5.00 -51.93 -0.26 0.92 16 22 H 0.02 0.39 7.25 -51.93 -0.38 0.02 16 23 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 24 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.07 1.20 7.79 -51.93 -0.40 0.80 16 26 H 0.03 0.56 8.00 -51.93 -0.42 0.15 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.96 7.76 -51.93 -0.40 0.55 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.91 8.00 -51.93 -0.42 0.49 16 31 H 0.03 0.27 7.58 -51.93 -0.39 -0.13 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.34 3.13 8.99 -39.29 -0.35 2.78 16 34 H 0.34 2.70 9.08 -39.29 -0.36 2.34 16 35 H 0.04 0.87 7.69 -51.93 -0.40 0.47 16 36 H 0.08 1.56 7.59 -51.93 -0.39 1.16 16 LS Contribution 277.06 15.07 4.18 4.18 Total: -1.00 -30.34 277.06 -7.71 -38.05 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -6.26 Total: 1.72 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -0.76 Total: -14.02 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: -0.47 Total: -46.92 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.40 Total: 16.99 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.34 -7.71 -38.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723678600.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.337 kcal (2) G-P(sol) polarization free energy of solvation -30.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds