Wall clock time and date at job start Mon Mar 30 2020 03:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.47156 * 2 1 4 4 C 1.50698 * 109.47351 * 120.00694 * 2 1 3 5 5 H 1.07998 * 120.00421 * 116.94973 * 4 2 1 6 6 C 1.37880 * 119.99510 * 296.95494 * 4 2 1 7 7 N 1.31514 * 119.99705 * 160.97616 * 6 4 2 8 8 Si 1.86796 * 120.00376 * 340.97221 * 6 4 2 9 9 H 1.48498 * 109.47298 * 274.59086 * 8 6 4 10 10 H 1.48506 * 109.46978 * 34.58828 * 8 6 4 11 11 H 1.48497 * 109.47159 * 154.58944 * 8 6 4 12 12 N 1.46901 * 109.46687 * 240.00665 * 2 1 3 13 13 C 1.48531 * 111.00525 * 59.53761 * 12 2 1 14 14 C 1.54933 * 103.22915 * 159.71801 * 13 12 2 15 15 C 1.54593 * 102.92131 * 322.58534 * 14 13 12 16 16 H 1.09005 * 110.30734 * 263.04143 * 15 14 13 17 17 C 1.52996 * 110.30782 * 140.87664 * 15 14 13 18 18 C 1.52999 * 109.47428 * 69.28154 * 17 15 14 19 19 N 1.46905 * 109.47219 * 179.97438 * 18 17 15 20 20 C 1.47908 * 110.99782 * 176.93245 * 12 2 1 21 21 H 1.08997 * 109.46957 * 293.99692 * 1 2 3 22 22 H 1.08998 * 109.46938 * 53.99617 * 1 2 3 23 23 H 1.09003 * 109.46629 * 174.00001 * 1 2 3 24 24 H 0.96997 * 120.00107 * 179.97438 * 7 6 4 25 25 H 1.09000 * 110.66176 * 278.15243 * 13 12 2 26 26 H 1.08995 * 110.66739 * 41.27903 * 13 12 2 27 27 H 1.09004 * 110.72042 * 204.22626 * 14 13 12 28 28 H 1.09002 * 110.87843 * 81.01343 * 14 13 12 29 29 H 1.09005 * 109.47050 * 189.28080 * 17 15 14 30 30 H 1.09004 * 109.47151 * 309.27622 * 17 15 14 31 31 H 1.08997 * 109.47165 * 300.00248 * 18 17 15 32 32 H 1.08999 * 109.47058 * 59.99948 * 18 17 15 33 33 H 1.00902 * 110.99789 * 56.04457 * 19 18 17 34 34 H 1.00903 * 110.99752 * 179.97438 * 19 18 17 35 35 H 1.09001 * 109.91412 * 333.50921 * 20 12 2 36 36 H 1.08995 * 109.91821 * 94.80017 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6121 -1.6165 1.1320 6 6 1.7519 -0.2040 2.4817 7 7 1.8471 -0.9779 3.5407 8 14 1.2368 1.5813 2.6728 9 1 2.4461 2.4385 2.7628 10 1 0.4260 1.9910 1.4980 11 1 0.4289 1.7337 3.9094 12 7 2.0196 -0.6924 -1.1996 13 6 1.5343 -0.0253 -2.4347 14 6 2.5258 -0.5196 -3.5177 15 6 3.8736 -0.5565 -2.7614 16 1 4.4399 0.3550 -2.9528 17 6 4.6843 -1.7844 -3.1807 18 6 5.1545 -1.6157 -4.6268 19 7 5.9335 -2.7945 -5.0292 20 6 3.4963 -0.6485 -1.2713 21 1 -0.3633 0.4179 0.9388 22 1 -0.3633 0.6041 -0.8314 23 1 -0.3633 -1.0221 -0.1074 24 1 1.6501 -0.6216 4.4211 25 1 0.5183 -0.3429 -2.6695 26 1 1.5856 1.0586 -2.3321 27 1 2.5696 0.1829 -4.3500 28 1 2.2532 -1.5149 -3.8688 29 1 5.5503 -1.8887 -2.5269 30 1 4.0610 -2.6753 -3.1028 31 1 4.2887 -1.5115 -5.2806 32 1 5.7778 -0.7250 -4.7046 33 1 5.3987 -3.6410 -4.9045 34 1 6.2553 -2.7074 -5.9815 35 1 3.8680 0.2273 -0.7394 36 1 3.9163 -1.5557 -0.8372 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723678600.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:26 Heat of formation + Delta-G solvation = -28.448322 kcal Electronic energy + Delta-G solvation = -14655.743610 eV Core-core repulsion = 12366.197073 eV Total energy + Delta-G solvation = -2289.546537 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.19612 -36.94514 -35.24769 -33.61533 -31.15457 -30.06388 -27.46916 -26.80342 -23.23537 -22.90963 -21.16807 -20.84947 -18.76594 -17.16083 -16.84356 -16.34931 -16.11149 -15.74347 -14.95821 -14.75021 -14.50952 -14.17632 -13.81172 -13.69757 -13.28264 -13.02280 -12.82768 -12.48485 -12.32032 -12.04448 -11.98738 -11.56834 -11.54838 -11.38399 -11.34166 -11.17360 -10.59374 -9.55805 -9.05630 -8.32437 -6.28155 1.31337 1.34577 1.44028 2.33319 2.99601 3.36316 3.56584 3.79562 3.87953 4.06125 4.40142 4.43306 4.48192 4.55885 4.66219 4.72645 4.75719 4.79058 4.81857 4.87441 5.06349 5.07788 5.10629 5.16407 5.26068 5.36924 5.41569 5.52722 5.73918 6.03890 6.27358 6.31107 6.64414 6.68870 6.75404 7.34301 8.84832 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.047229 B = 0.007367 C = 0.006854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.717984 B = 3800.062236 C = 4084.064016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.182 3.818 3 H -0.012 1.012 4 C -0.517 4.517 5 H 0.030 0.970 6 C 0.021 3.979 7 N -0.938 5.938 8 Si 0.927 3.073 9 H -0.276 1.276 10 H -0.233 1.233 11 H -0.283 1.283 12 N -0.522 5.522 13 C 0.027 3.973 14 C -0.104 4.104 15 C -0.090 4.090 16 H 0.083 0.917 17 C -0.099 4.099 18 C 0.069 3.931 19 N -0.864 5.864 20 C 0.056 3.944 21 H 0.041 0.959 22 H 0.054 0.946 23 H 0.046 0.954 24 H 0.266 0.734 25 H 0.082 0.918 26 H 0.037 0.963 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.040 0.960 32 H 0.071 0.929 33 H 0.345 0.655 34 H 0.351 0.649 35 H 0.021 0.979 36 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.189 3.052 -17.803 18.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.074 3.926 3 H 0.006 0.994 4 C -0.555 4.555 5 H 0.049 0.951 6 C -0.178 4.178 7 N -0.577 5.577 8 Si 0.750 3.250 9 H -0.202 1.202 10 H -0.156 1.156 11 H -0.209 1.209 12 N -0.247 5.247 13 C -0.101 4.101 14 C -0.142 4.142 15 C -0.110 4.110 16 H 0.101 0.899 17 C -0.137 4.137 18 C -0.062 4.062 19 N -0.395 5.395 20 C -0.072 4.072 21 H 0.059 0.941 22 H 0.073 0.927 23 H 0.066 0.934 24 H 0.075 0.925 25 H 0.100 0.900 26 H 0.055 0.945 27 H 0.111 0.889 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.157 0.843 34 H 0.164 0.836 35 H 0.039 0.961 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.471 2.719 -16.989 17.382 hybrid contribution -0.504 1.091 0.424 1.275 sum 1.966 3.811 -16.566 17.112 Atomic orbital electron populations 1.22037 0.96490 1.00692 0.99820 1.19624 0.93108 0.91094 0.88814 0.99431 1.21073 1.34115 1.09969 0.90330 0.95129 1.25724 0.95012 1.01702 0.95339 1.70144 1.50751 1.37119 0.99710 0.86192 0.79035 0.80916 0.78824 1.20233 1.15564 1.20925 1.64631 1.06942 1.51143 1.01961 1.23326 1.00038 0.96346 0.90401 1.22535 0.92682 1.02177 0.96758 1.21990 0.96971 0.99096 0.92917 0.89883 1.21511 0.98686 0.96869 0.96653 1.21724 0.95985 0.93790 0.94678 1.58690 1.45463 1.05047 1.30299 1.22641 0.88997 0.99267 0.96307 0.94054 0.92691 0.93449 0.92514 0.90014 0.94518 0.88870 0.90677 0.92766 0.92619 0.94192 0.91014 0.84269 0.83609 0.96087 0.93336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.79 8.22 71.98 0.59 -5.20 16 2 C 0.18 8.79 1.31 44.17 0.06 8.85 16 3 H -0.01 -0.57 6.74 -2.39 -0.02 -0.58 16 4 C -0.52 -30.39 8.53 25.60 0.22 -30.17 16 5 H 0.03 2.03 7.79 -2.91 -0.02 2.01 16 6 C 0.02 1.22 5.27 84.66 0.45 1.66 16 7 N -0.94 -59.37 13.96 21.45 0.30 -59.07 16 8 Si 0.93 44.16 25.86 68.60 1.77 45.94 16 9 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 10 H -0.23 -10.07 5.65 99.48 0.56 -9.51 16 11 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 12 N -0.52 -22.02 5.10 -862.25 -4.40 -26.42 16 13 C 0.03 0.85 5.42 86.65 0.47 1.32 16 14 C -0.10 -2.56 5.87 31.80 0.19 -2.38 16 15 C -0.09 -2.51 3.00 -9.92 -0.03 -2.54 16 16 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 17 C -0.10 -2.50 4.63 30.59 0.14 -2.36 16 18 C 0.07 1.32 6.66 86.30 0.57 1.90 16 19 N -0.86 -15.52 9.62 -186.71 -1.80 -17.32 16 20 C 0.06 2.22 5.50 86.44 0.48 2.70 16 21 H 0.04 1.85 5.00 -2.39 -0.01 1.84 16 22 H 0.05 2.00 7.25 -2.39 -0.02 1.98 16 23 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 24 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 25 H 0.08 2.45 7.79 -2.39 -0.02 2.43 16 26 H 0.04 1.15 8.00 -2.39 -0.02 1.13 16 27 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.07 1.80 7.76 -2.39 -0.02 1.78 16 29 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 30 H 0.06 1.50 8.00 -2.39 -0.02 1.48 16 31 H 0.04 0.67 7.58 -2.39 -0.02 0.65 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.34 5.71 8.99 -89.69 -0.81 4.91 16 34 H 0.35 4.71 9.08 -89.69 -0.81 3.89 16 35 H 0.02 0.89 7.69 -2.39 -0.02 0.87 16 36 H 0.05 2.12 7.59 -2.39 -0.02 2.10 16 Total: -1.00 -67.53 277.06 -1.70 -69.23 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -0.71 Total: 13.85 kcal Atomic # 6 Polarization: -29.35 SS G_CDS: 3.13 Total: -26.22 kcal Atomic # 7 Polarization: -96.91 SS G_CDS: -5.89 Total: -102.80 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.77 Total: 45.94 kcal Total: -67.53 -1.70 -69.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723678600.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.778 kcal (2) G-P(sol) polarization free energy of solvation -67.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds