Wall clock time and date at job start Mon Mar 30 2020 03:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47347 * 59.99862 * 8 6 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47399 * 299.99813 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 C 1.47846 * 110.99914 * 180.84119 * 12 2 1 14 14 C 1.54911 * 104.79552 * 213.63837 * 13 12 2 15 15 C 1.55136 * 101.65265 * 37.07353 * 14 13 12 16 16 H 1.09004 * 110.70662 * 82.72687 * 15 14 13 17 17 C 1.52994 * 110.70684 * 205.96126 * 15 14 13 18 18 C 1.53002 * 109.47451 * 288.60146 * 17 15 14 19 19 N 1.46898 * 109.47247 * 179.97438 * 18 17 15 20 20 C 1.47445 * 110.99525 * 60.00398 * 12 2 1 21 21 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 22 22 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 23 23 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 24 24 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 25 25 H 1.08992 * 110.37708 * 332.47210 * 13 12 2 26 26 H 1.09004 * 110.37076 * 94.81291 * 13 12 2 27 27 H 1.09004 * 110.99254 * 278.98164 * 14 13 12 28 28 H 1.09001 * 111.02055 * 155.17807 * 14 13 12 29 29 H 1.09001 * 109.47460 * 48.60042 * 17 15 14 30 30 H 1.09003 * 109.47542 * 168.60028 * 17 15 14 31 31 H 1.09004 * 109.46836 * 299.99841 * 18 17 15 32 32 H 1.08996 * 109.47163 * 59.99631 * 18 17 15 33 33 H 1.00903 * 110.99988 * 56.05168 * 19 18 17 34 34 H 1.00907 * 110.99790 * 179.97438 * 19 18 17 35 35 H 1.09001 * 109.88476 * 242.66116 * 20 12 2 36 36 H 1.08997 * 109.89054 * 3.85141 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.8075 -1.1190 4.0077 10 1 1.8270 -0.4198 5.2204 11 1 1.8281 -2.5198 4.0082 12 7 2.0196 -0.6926 -1.1994 13 6 3.4974 -0.7299 -1.2234 14 6 3.8711 -0.6371 -2.7239 15 6 2.7948 0.3460 -3.2547 16 1 3.0898 1.3785 -3.0672 17 6 2.5409 0.1167 -4.7459 18 6 3.7464 0.6079 -5.5500 19 7 3.5029 0.3871 -6.9817 20 6 1.5469 -0.0240 -2.4255 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 0.7082 1.1609 3.4844 25 1 3.9074 0.1194 -0.6770 26 1 3.8603 -1.6661 -0.7992 27 1 3.7848 -1.6095 -3.2088 28 1 4.8726 -0.2264 -2.8528 29 1 2.3909 -0.9472 -4.9296 30 1 1.6513 0.6672 -5.0520 31 1 3.8965 1.6718 -5.3664 32 1 4.6360 0.0574 -5.2439 33 1 2.6477 0.8343 -7.2762 34 1 4.2853 0.7040 -7.5346 35 1 0.9105 -0.7011 -2.9953 36 1 0.9933 0.8783 -2.1660 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723678602.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:29 Heat of formation + Delta-G solvation = -31.189853 kcal Electronic energy + Delta-G solvation = -14588.683324 eV Core-core repulsion = 12299.017905 eV Total energy + Delta-G solvation = -2289.665419 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.16809 -36.88334 -35.29896 -33.23621 -31.21968 -29.39528 -27.75346 -26.74597 -23.22485 -22.91466 -21.35186 -20.63593 -18.47197 -17.27264 -16.96363 -16.23884 -15.87463 -15.46308 -14.99592 -14.78580 -14.39236 -14.23827 -13.71651 -13.26783 -13.03141 -12.81184 -12.65399 -12.59065 -12.35850 -12.22954 -12.07092 -11.63585 -11.53577 -11.47429 -11.28937 -10.94681 -10.53113 -9.58912 -8.90127 -8.12254 -6.24566 1.41176 1.43494 1.51128 2.41793 3.15519 3.45432 3.54857 3.74397 3.92698 4.11665 4.30687 4.46554 4.52931 4.63811 4.67912 4.76715 4.79517 4.91740 4.98285 5.03219 5.07653 5.14066 5.18499 5.24899 5.33277 5.46955 5.52524 5.71727 5.77645 6.24336 6.25493 6.41004 6.63251 6.72427 6.90335 7.45064 8.93654 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.063468 B = 0.006512 C = 0.006128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.060868 B = 4299.046993 C = 4567.990491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.213 3.787 3 H -0.039 1.039 4 C -0.520 4.520 5 H 0.054 0.946 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.961 3.039 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.272 1.272 12 N -0.539 5.539 13 C 0.055 3.945 14 C -0.111 4.111 15 C -0.099 4.099 16 H 0.066 0.934 17 C -0.093 4.093 18 C 0.065 3.935 19 N -0.859 5.859 20 C 0.045 3.955 21 H 0.029 0.971 22 H 0.060 0.940 23 H 0.029 0.971 24 H 0.262 0.738 25 H 0.020 0.980 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.028 0.972 32 H 0.072 0.928 33 H 0.346 0.654 34 H 0.350 0.650 35 H 0.073 0.927 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.978 0.396 -14.091 14.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.106 3.894 3 H -0.022 1.022 4 C -0.559 4.559 5 H 0.073 0.927 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.787 3.213 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.197 1.197 12 N -0.264 5.264 13 C -0.073 4.073 14 C -0.149 4.149 15 C -0.119 4.119 16 H 0.085 0.915 17 C -0.132 4.132 18 C -0.066 4.066 19 N -0.390 5.390 20 C -0.083 4.083 21 H 0.048 0.952 22 H 0.079 0.921 23 H 0.048 0.952 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.080 0.920 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.046 0.954 32 H 0.090 0.910 33 H 0.158 0.842 34 H 0.163 0.837 35 H 0.091 0.909 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.664 -0.766 -13.726 14.517 hybrid contribution 0.374 1.705 1.178 2.106 sum 5.038 0.939 -12.547 13.553 Atomic orbital electron populations 1.21666 0.97456 0.99124 0.99667 1.19199 0.92588 0.89903 0.87695 1.02178 1.21369 1.31150 1.12251 0.91111 0.92733 1.25737 0.95345 0.95769 1.01961 1.70013 1.37757 1.24231 1.24134 0.85562 0.78727 0.78681 0.78370 1.19635 1.20771 1.19702 1.63606 1.08795 1.51801 1.02189 1.22780 0.88216 0.99583 0.96677 1.22765 0.98697 0.99867 0.93537 1.22304 0.95100 0.98993 0.95524 0.91522 1.21406 0.98093 1.02023 0.91655 1.21734 0.98359 0.98279 0.88191 1.58709 1.08875 1.67625 1.03792 1.22892 0.97369 0.96814 0.91262 0.95249 0.92139 0.95187 0.92899 0.96176 0.92031 0.90163 0.89653 0.91394 0.91748 0.95399 0.90983 0.84164 0.83702 0.90908 0.94685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.21 8.84 71.98 0.64 -5.58 16 2 C 0.21 11.38 1.64 44.17 0.07 11.45 16 3 H -0.04 -2.32 8.10 -2.39 -0.02 -2.34 16 4 C -0.52 -29.73 8.07 25.60 0.21 -29.52 16 5 H 0.05 3.11 7.22 -2.91 -0.02 3.09 16 6 C 0.01 0.58 5.30 84.66 0.45 1.03 16 7 N -0.92 -54.28 11.32 21.45 0.24 -54.03 16 8 Si 0.96 44.58 29.54 68.60 2.03 46.60 16 9 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 12 N -0.54 -24.22 5.02 -864.72 -4.34 -28.56 16 13 C 0.06 2.22 5.68 86.77 0.49 2.71 16 14 C -0.11 -3.25 5.92 31.98 0.19 -3.06 16 15 C -0.10 -2.87 2.92 -9.61 -0.03 -2.89 16 16 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 17 C -0.09 -2.13 4.83 30.59 0.15 -1.98 16 18 C 0.07 1.25 6.68 86.30 0.58 1.82 16 19 N -0.86 -14.25 9.62 -186.72 -1.80 -16.05 16 20 C 0.04 1.64 5.74 86.65 0.50 2.14 16 21 H 0.03 1.32 6.50 -2.39 -0.02 1.31 16 22 H 0.06 3.39 6.07 -2.39 -0.01 3.37 16 23 H 0.03 1.51 8.14 -2.38 -0.02 1.49 16 24 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 25 H 0.02 0.88 7.77 -2.39 -0.02 0.86 16 26 H 0.06 2.51 7.89 -2.38 -0.02 2.49 16 27 H 0.08 2.22 7.94 -2.38 -0.02 2.20 16 28 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.07 1.64 8.00 -2.39 -0.02 1.62 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.07 1.40 7.68 -2.39 -0.02 1.38 16 33 H 0.35 4.94 8.99 -89.69 -0.81 4.13 16 34 H 0.35 4.49 9.08 -89.69 -0.81 3.67 16 35 H 0.07 2.52 7.82 -2.39 -0.02 2.50 16 36 H 0.03 1.37 6.35 -2.39 -0.02 1.36 16 Total: -1.00 -62.93 280.87 -1.20 -64.13 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -0.57 Total: 11.78 kcal Atomic # 6 Polarization: -27.11 SS G_CDS: 3.24 Total: -23.87 kcal Atomic # 7 Polarization: -92.75 SS G_CDS: -5.90 Total: -98.65 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -62.93 -1.20 -64.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723678602.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.942 kcal (2) G-P(sol) polarization free energy of solvation -62.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds