Wall clock time and date at job start Mon Mar 30 2020 03:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08989 * 109.48025 * 2 1 4 4 C 1.50700 * 109.47041 * 239.99455 * 2 1 3 5 5 H 1.08000 * 120.00379 * 245.47486 * 4 2 1 6 6 C 1.37872 * 119.99736 * 65.47157 * 4 2 1 7 7 N 1.31516 * 120.00253 * 355.15087 * 6 4 2 8 8 Si 1.86809 * 119.99895 * 175.14580 * 6 4 2 9 9 H 1.48500 * 109.47041 * 95.00350 * 8 6 4 10 10 H 1.48501 * 109.46987 * 215.00172 * 8 6 4 11 11 H 1.48494 * 109.47181 * 334.99965 * 8 6 4 12 12 N 1.46909 * 109.46772 * 119.99909 * 2 1 3 13 13 C 1.48550 * 111.00151 * 295.06327 * 12 2 1 14 14 C 1.54380 * 104.59791 * 200.96050 * 13 12 2 15 15 C 1.54267 * 105.05539 * 23.85317 * 14 13 12 16 16 H 1.09000 * 110.31903 * 241.09964 * 15 14 13 17 17 C 1.52995 * 110.32107 * 118.89999 * 15 14 13 18 18 C 1.52994 * 109.47504 * 66.45292 * 17 15 14 19 19 N 1.46905 * 109.47367 * 180.02562 * 18 17 15 20 20 C 1.48564 * 110.99737 * 179.64337 * 12 2 1 21 21 H 1.09004 * 109.47024 * 64.98599 * 1 2 3 22 22 H 1.08995 * 109.47999 * 184.99083 * 1 2 3 23 23 H 1.09005 * 109.46857 * 304.99340 * 1 2 3 24 24 H 0.96995 * 119.99798 * 179.97438 * 7 6 4 25 25 H 1.09001 * 110.41435 * 82.18189 * 13 12 2 26 26 H 1.09005 * 110.51401 * 319.79142 * 13 12 2 27 27 H 1.08997 * 110.32330 * 264.95985 * 14 13 12 28 28 H 1.09004 * 110.32377 * 142.74710 * 14 13 12 29 29 H 1.09001 * 109.46984 * 186.45040 * 17 15 14 30 30 H 1.08998 * 109.47286 * 306.44845 * 17 15 14 31 31 H 1.09001 * 109.47309 * 299.99295 * 18 17 15 32 32 H 1.09002 * 109.47675 * 59.99636 * 18 17 15 33 33 H 1.00896 * 111.00171 * 179.97438 * 19 18 17 34 34 H 1.00903 * 110.99649 * 303.94534 * 19 18 17 35 35 H 1.09000 * 110.41192 * 40.26560 * 20 12 2 36 36 H 1.09005 * 110.41056 * 277.81601 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5783 -1.6373 -1.1338 6 6 1.7947 -0.1775 -2.4795 7 7 1.0491 0.8987 -2.6043 8 14 2.5320 -0.9838 -3.9948 9 1 1.5403 -1.9134 -4.5928 10 1 2.8912 0.0616 -4.9864 11 1 3.7503 -1.7403 -3.6097 12 7 2.0196 -0.6925 1.1995 13 6 1.6431 0.0466 2.4319 14 6 2.6347 -0.4540 3.5041 15 6 3.8594 -0.9582 2.7130 16 1 4.0185 -2.0205 2.8983 17 6 5.1058 -0.1583 3.0966 18 6 5.4699 -0.4489 4.5539 19 7 6.6664 0.3198 4.9223 20 6 3.5047 -0.7198 1.2296 21 1 -0.3633 0.4346 -0.9313 22 1 -0.3635 -1.0237 0.0894 23 1 -0.3633 0.5894 0.8419 24 1 0.8823 1.2739 -3.4830 25 1 0.6193 -0.1916 2.7203 26 1 1.7550 1.1205 2.2825 27 1 2.1928 -1.2689 4.0775 28 1 2.9216 0.3634 4.1655 29 1 5.9352 -0.4460 2.4506 30 1 4.9051 0.9065 2.9776 31 1 4.6406 -0.1611 5.2000 32 1 5.6707 -1.5136 4.6729 33 1 6.9272 0.1452 5.8813 34 1 7.4322 0.1187 4.2968 35 1 3.9094 0.2338 0.8905 36 1 3.8824 -1.5352 0.6126 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723678603.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:32 Heat of formation + Delta-G solvation = -11.171921 kcal Electronic energy + Delta-G solvation = -14623.119703 eV Core-core repulsion = 12334.322326 eV Total energy + Delta-G solvation = -2288.797376 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.60988 -35.61280 -33.62142 -31.61058 -29.34125 -28.23920 -25.85605 -24.95920 -22.07346 -21.45904 -19.65475 -18.91179 -16.48087 -15.97938 -15.50165 -14.81168 -14.68696 -14.05653 -13.47901 -13.28162 -13.07728 -12.14680 -11.97411 -11.72824 -11.51536 -11.40895 -11.05933 -10.85633 -10.61101 -10.46956 -10.20369 -10.12863 -9.98276 -9.89830 -9.71827 -8.88223 -8.80413 -8.36770 -7.26567 -5.98972 -4.02868 3.31918 3.38527 3.42422 4.42331 4.45532 4.96908 5.08496 5.13297 5.32990 5.37974 5.47568 5.55379 5.69411 5.92080 5.97358 6.07442 6.27358 6.29654 6.39793 6.46835 6.60256 6.78035 6.80548 6.86718 7.01968 7.09625 7.15597 7.30195 7.50221 7.66246 7.86605 8.16770 8.34969 8.60084 9.04895 9.62280 11.08521 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.038368 B = 0.007475 C = 0.006606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.601485 B = 3744.936397 C = 4237.775766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.201 3.799 3 H 0.002 0.998 4 C -0.502 4.502 5 H 0.061 0.939 6 C 0.058 3.942 7 N -0.893 5.893 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.507 5.507 13 C 0.032 3.968 14 C -0.118 4.118 15 C -0.095 4.095 16 H 0.070 0.930 17 C -0.109 4.109 18 C 0.061 3.939 19 N -0.854 5.854 20 C 0.057 3.943 21 H 0.081 0.919 22 H 0.033 0.967 23 H 0.006 0.994 24 H 0.260 0.740 25 H 0.068 0.932 26 H 0.032 0.968 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.024 0.976 33 H 0.337 0.663 34 H 0.339 0.661 35 H 0.038 0.962 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.728 -2.212 11.645 13.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.094 3.906 3 H 0.020 0.980 4 C -0.541 4.541 5 H 0.079 0.921 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.723 3.277 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.232 5.232 13 C -0.097 4.097 14 C -0.156 4.156 15 C -0.115 4.115 16 H 0.088 0.912 17 C -0.147 4.147 18 C -0.070 4.070 19 N -0.383 5.383 20 C -0.072 4.072 21 H 0.099 0.901 22 H 0.052 0.948 23 H 0.025 0.975 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.050 0.950 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.042 0.958 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.056 0.944 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.957 -1.976 11.311 12.936 hybrid contribution 1.069 -0.450 -0.781 1.398 sum 7.025 -2.426 10.530 12.889 Atomic orbital electron populations 1.21755 0.97793 0.98785 1.00294 1.19432 0.92444 0.92175 0.86516 0.98048 1.21119 1.34746 1.08189 0.90000 0.92069 1.24947 0.95215 0.95158 0.98977 1.69921 1.37745 1.22086 1.23499 0.86533 0.79538 0.78948 0.82692 1.20762 1.21287 1.19898 1.65487 1.07279 1.48013 1.02377 1.23008 0.98613 0.96094 0.91976 1.22394 0.95731 0.99993 0.97517 1.21950 0.93757 0.99215 0.96528 0.91155 1.21630 0.97564 1.00982 0.94546 1.21871 0.93057 0.94495 0.97547 1.58731 1.08520 1.63587 1.07478 1.22847 0.90435 1.00566 0.93320 0.90061 0.94797 0.97490 0.93032 0.91364 0.94994 0.91974 0.92044 0.92243 0.91230 0.90954 0.95798 0.85083 0.84896 0.94397 0.90807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 8.93 37.16 0.33 -2.90 16 2 C 0.20 5.23 1.77 -68.86 -0.12 5.11 16 3 H 0.00 0.05 7.97 -51.94 -0.41 -0.36 16 4 C -0.50 -14.04 7.94 -34.44 -0.27 -14.32 16 5 H 0.06 1.72 7.13 -52.49 -0.37 1.34 16 6 C 0.06 1.63 5.35 -17.82 -0.10 1.54 16 7 N -0.89 -25.95 11.52 55.43 0.64 -25.31 16 8 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.51 -11.32 5.19 -223.41 -1.16 -12.48 16 13 C 0.03 0.60 5.56 -2.19 -0.01 0.59 16 14 C -0.12 -1.81 6.14 -25.35 -0.16 -1.96 16 15 C -0.09 -1.47 3.09 -89.24 -0.28 -1.75 16 16 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 17 C -0.11 -1.47 4.67 -26.74 -0.12 -1.59 16 18 C 0.06 0.69 6.61 -3.82 -0.03 0.66 16 19 N -0.85 -8.69 9.62 -10.37 -0.10 -8.79 16 20 C 0.06 1.14 5.23 -2.18 -0.01 1.12 16 21 H 0.08 2.23 6.24 -51.93 -0.32 1.90 16 22 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.01 0.14 7.33 -51.93 -0.38 -0.24 16 24 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.07 1.26 7.82 -51.93 -0.41 0.85 16 26 H 0.03 0.63 7.90 -51.93 -0.41 0.22 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.85 6.84 -51.93 -0.36 0.49 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.07 0.83 6.93 -51.93 -0.36 0.47 16 32 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.34 2.73 9.08 -39.29 -0.36 2.38 16 34 H 0.34 3.08 8.99 -39.29 -0.35 2.73 16 35 H 0.04 0.81 7.69 -51.93 -0.40 0.41 16 36 H 0.07 1.53 7.51 -51.93 -0.39 1.14 16 LS Contribution 281.09 15.07 4.24 4.24 Total: -1.00 -29.36 281.09 -8.37 -37.73 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.19 Total: 1.53 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -0.76 Total: -13.49 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: -0.62 Total: -46.58 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.36 -8.37 -37.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723678603.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.556 kcal (2) G-P(sol) polarization free energy of solvation -29.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds