Wall clock time and date at job start Mon Mar 30 2020 03:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08989 * 109.48025 * 2 1 4 4 C 1.50700 * 109.47041 * 239.99455 * 2 1 3 5 5 H 1.08000 * 120.00379 * 245.47486 * 4 2 1 6 6 C 1.37872 * 119.99736 * 65.47157 * 4 2 1 7 7 N 1.31516 * 120.00253 * 355.15087 * 6 4 2 8 8 Si 1.86809 * 119.99895 * 175.14580 * 6 4 2 9 9 H 1.48500 * 109.47041 * 95.00350 * 8 6 4 10 10 H 1.48501 * 109.46987 * 215.00172 * 8 6 4 11 11 H 1.48494 * 109.47181 * 334.99965 * 8 6 4 12 12 N 1.46909 * 109.46772 * 119.99909 * 2 1 3 13 13 C 1.48550 * 111.00151 * 295.06327 * 12 2 1 14 14 C 1.54380 * 104.59791 * 200.96050 * 13 12 2 15 15 C 1.54267 * 105.05539 * 23.85317 * 14 13 12 16 16 H 1.09000 * 110.31903 * 241.09964 * 15 14 13 17 17 C 1.52995 * 110.32107 * 118.89999 * 15 14 13 18 18 C 1.52994 * 109.47504 * 66.45292 * 17 15 14 19 19 N 1.46905 * 109.47367 * 180.02562 * 18 17 15 20 20 C 1.48564 * 110.99737 * 179.64337 * 12 2 1 21 21 H 1.09004 * 109.47024 * 64.98599 * 1 2 3 22 22 H 1.08995 * 109.47999 * 184.99083 * 1 2 3 23 23 H 1.09005 * 109.46857 * 304.99340 * 1 2 3 24 24 H 0.96995 * 119.99798 * 179.97438 * 7 6 4 25 25 H 1.09001 * 110.41435 * 82.18189 * 13 12 2 26 26 H 1.09005 * 110.51401 * 319.79142 * 13 12 2 27 27 H 1.08997 * 110.32330 * 264.95985 * 14 13 12 28 28 H 1.09004 * 110.32377 * 142.74710 * 14 13 12 29 29 H 1.09001 * 109.46984 * 186.45040 * 17 15 14 30 30 H 1.08998 * 109.47286 * 306.44845 * 17 15 14 31 31 H 1.09001 * 109.47309 * 299.99295 * 18 17 15 32 32 H 1.09002 * 109.47675 * 59.99636 * 18 17 15 33 33 H 1.00896 * 111.00171 * 179.97438 * 19 18 17 34 34 H 1.00903 * 110.99649 * 303.94534 * 19 18 17 35 35 H 1.09000 * 110.41192 * 40.26560 * 20 12 2 36 36 H 1.09005 * 110.41056 * 277.81601 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5783 -1.6373 -1.1338 6 6 1.7947 -0.1775 -2.4795 7 7 1.0491 0.8987 -2.6043 8 14 2.5320 -0.9838 -3.9948 9 1 1.5403 -1.9134 -4.5928 10 1 2.8912 0.0616 -4.9864 11 1 3.7503 -1.7403 -3.6097 12 7 2.0196 -0.6925 1.1995 13 6 1.6431 0.0466 2.4319 14 6 2.6347 -0.4540 3.5041 15 6 3.8594 -0.9582 2.7130 16 1 4.0185 -2.0205 2.8983 17 6 5.1058 -0.1583 3.0966 18 6 5.4699 -0.4489 4.5539 19 7 6.6664 0.3198 4.9223 20 6 3.5047 -0.7198 1.2296 21 1 -0.3633 0.4346 -0.9313 22 1 -0.3635 -1.0237 0.0894 23 1 -0.3633 0.5894 0.8419 24 1 0.8823 1.2739 -3.4830 25 1 0.6193 -0.1916 2.7203 26 1 1.7550 1.1205 2.2825 27 1 2.1928 -1.2689 4.0775 28 1 2.9216 0.3634 4.1655 29 1 5.9352 -0.4460 2.4506 30 1 4.9051 0.9065 2.9776 31 1 4.6406 -0.1611 5.2000 32 1 5.6707 -1.5136 4.6729 33 1 6.9272 0.1452 5.8813 34 1 7.4322 0.1187 4.2968 35 1 3.9094 0.2338 0.8905 36 1 3.8824 -1.5352 0.6126 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723678603.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:31 Heat of formation + Delta-G solvation = -32.665275 kcal Electronic energy + Delta-G solvation = -14624.051724 eV Core-core repulsion = 12334.322326 eV Total energy + Delta-G solvation = -2289.729398 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.12940 -36.91287 -35.29249 -33.30777 -30.85050 -29.89860 -27.39470 -26.87713 -23.38698 -22.94560 -21.36925 -20.36396 -18.42201 -17.20902 -17.14451 -16.33994 -15.86895 -15.48082 -15.03125 -14.81681 -14.61023 -13.90483 -13.55109 -13.29600 -12.97616 -12.88147 -12.68257 -12.54955 -12.51320 -12.28301 -12.06083 -11.70511 -11.44628 -11.38325 -11.30149 -10.95337 -10.51510 -9.57775 -9.10776 -8.14409 -6.26169 1.40440 1.40481 1.52086 2.40692 3.14494 3.36725 3.68942 3.83118 3.87342 4.22794 4.30869 4.33601 4.51275 4.66530 4.74505 4.76663 4.87240 4.89926 4.95429 4.99384 5.01129 5.14875 5.19886 5.23474 5.37893 5.42272 5.50827 5.69556 5.73639 6.19475 6.26408 6.32328 6.62905 6.64122 6.88752 7.43404 8.92631 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.038368 B = 0.007475 C = 0.006606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.601485 B = 3744.936397 C = 4237.775766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.206 3.794 3 H -0.037 1.037 4 C -0.519 4.519 5 H 0.055 0.945 6 C 0.009 3.991 7 N -0.921 5.921 8 Si 0.961 3.039 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.268 1.268 12 N -0.517 5.517 13 C 0.027 3.973 14 C -0.107 4.107 15 C -0.083 4.083 16 H 0.085 0.915 17 C -0.102 4.102 18 C 0.068 3.932 19 N -0.863 5.863 20 C 0.055 3.945 21 H 0.055 0.945 22 H 0.034 0.966 23 H 0.025 0.975 24 H 0.262 0.738 25 H 0.075 0.925 26 H 0.018 0.982 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.037 0.963 33 H 0.351 0.649 34 H 0.345 0.655 35 H 0.015 0.985 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.614 -3.286 12.932 15.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.098 3.902 3 H -0.020 1.020 4 C -0.557 4.557 5 H 0.073 0.927 6 C -0.189 4.189 7 N -0.561 5.561 8 Si 0.786 3.214 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.192 1.192 12 N -0.242 5.242 13 C -0.102 4.102 14 C -0.144 4.144 15 C -0.102 4.102 16 H 0.104 0.896 17 C -0.141 4.141 18 C -0.063 4.063 19 N -0.394 5.394 20 C -0.074 4.074 21 H 0.074 0.926 22 H 0.053 0.947 23 H 0.044 0.956 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.036 0.964 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.055 0.945 33 H 0.164 0.836 34 H 0.158 0.842 35 H 0.033 0.967 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.852 -3.057 12.624 14.686 hybrid contribution 0.789 -0.084 -1.161 1.407 sum 7.641 -3.142 11.463 14.130 Atomic orbital electron populations 1.21575 0.97317 0.98830 0.99745 1.19226 0.92811 0.90178 0.87985 1.01994 1.21358 1.34986 1.08183 0.91217 0.92681 1.25763 0.95459 0.95730 1.01968 1.70045 1.38564 1.23246 1.24268 0.85499 0.78912 0.78116 0.78861 1.20022 1.20766 1.19249 1.65403 1.08737 1.47816 1.02200 1.23118 1.00229 0.95138 0.91672 1.22368 0.94316 1.01254 0.96510 1.21866 0.94868 1.00535 0.92946 0.89615 1.21532 0.96586 0.99411 0.96531 1.21738 0.93670 0.95356 0.95508 1.58680 1.08547 1.63587 1.08617 1.22864 0.89054 0.98836 0.96632 0.92595 0.94672 0.95555 0.92882 0.90704 0.96398 0.89858 0.90115 0.92117 0.92999 0.90673 0.94526 0.83562 0.84236 0.96672 0.92147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.97 8.93 71.98 0.64 -5.32 16 2 C 0.21 11.01 1.77 44.17 0.08 11.09 16 3 H -0.04 -2.25 7.97 -2.39 -0.02 -2.27 16 4 C -0.52 -29.66 7.94 25.60 0.20 -29.45 16 5 H 0.05 3.14 7.13 -2.91 -0.02 3.12 16 6 C 0.01 0.53 5.35 84.65 0.45 0.99 16 7 N -0.92 -54.63 11.52 21.45 0.25 -54.39 16 8 Si 0.96 44.60 29.54 68.60 2.03 46.63 16 9 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 11 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 12 N -0.52 -23.23 5.19 -860.73 -4.47 -27.70 16 13 C 0.03 0.99 5.56 86.45 0.48 1.47 16 14 C -0.11 -2.98 6.14 31.49 0.19 -2.79 16 15 C -0.08 -2.41 3.09 -9.90 -0.03 -2.44 16 16 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 17 C -0.10 -2.58 4.67 30.59 0.14 -2.43 16 18 C 0.07 1.33 6.61 86.30 0.57 1.90 16 19 N -0.86 -15.33 9.62 -186.71 -1.80 -17.13 16 20 C 0.05 2.20 5.23 86.45 0.45 2.65 16 21 H 0.06 3.14 6.24 -2.39 -0.01 3.12 16 22 H 0.03 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.03 1.19 7.33 -2.38 -0.02 1.17 16 24 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 25 H 0.07 2.65 7.82 -2.39 -0.02 2.63 16 26 H 0.02 0.71 7.90 -2.38 -0.02 0.69 16 27 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.08 1.98 6.84 -2.39 -0.02 1.97 16 29 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.07 1.45 6.93 -2.39 -0.02 1.43 16 32 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.35 4.69 9.08 -89.70 -0.81 3.88 16 34 H 0.34 5.47 8.99 -89.69 -0.81 4.66 16 35 H 0.01 0.66 7.69 -2.39 -0.02 0.65 16 36 H 0.06 2.55 7.51 -2.38 -0.02 2.53 16 Total: -1.00 -63.62 281.09 -1.37 -64.99 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -0.57 Total: 11.93 kcal Atomic # 6 Polarization: -27.53 SS G_CDS: 3.19 Total: -24.34 kcal Atomic # 7 Polarization: -93.19 SS G_CDS: -6.02 Total: -99.21 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -63.62 -1.37 -64.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723678603.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.325 kcal (2) G-P(sol) polarization free energy of solvation -63.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds