Wall clock time and date at job start Mon Mar 30 2020 02:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08993 * 110.35493 * 2 1 4 4 C 1.54303 * 110.47802 * 237.77129 * 2 1 3 5 5 N 1.47898 * 107.08431 * 242.53709 * 4 2 1 6 6 C 1.46905 * 110.99929 * 214.00826 * 5 4 2 7 7 C 1.50700 * 109.46693 * 307.39776 * 6 5 4 8 8 H 1.07995 * 120.00346 * 0.02562 * 7 6 5 9 9 C 1.37886 * 119.99412 * 179.97438 * 7 6 5 10 10 N 1.31511 * 120.00432 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99621 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47191 * 0.02562 * 11 9 7 13 13 H 1.48495 * 109.46851 * 120.00157 * 11 9 7 14 14 H 1.48493 * 109.47276 * 240.00070 * 11 9 7 15 15 C 1.48530 * 105.82262 * 334.52107 * 5 4 2 16 16 C 1.54595 * 110.30574 * 122.13975 * 2 1 3 17 17 H 1.09003 * 110.72912 * 22.33517 * 16 2 1 18 18 C 1.53006 * 110.72391 * 259.23225 * 16 2 1 19 19 C 1.52997 * 109.47011 * 177.45385 * 18 16 2 20 20 N 1.46906 * 109.46969 * 180.02562 * 19 18 16 21 21 H 1.09001 * 109.47887 * 297.86120 * 1 2 3 22 22 H 1.09003 * 109.47067 * 57.86602 * 1 2 3 23 23 H 1.09000 * 109.47676 * 177.86058 * 1 2 3 24 24 H 1.08999 * 110.02067 * 123.10535 * 4 2 1 25 25 H 1.08997 * 109.94043 * 1.92266 * 4 2 1 26 26 H 1.09002 * 109.46856 * 67.39486 * 6 5 4 27 27 H 1.08994 * 109.47397 * 187.40057 * 6 5 4 28 28 H 0.96990 * 120.00330 * 179.97438 * 10 9 7 29 29 H 1.09000 * 110.67209 * 280.77196 * 15 5 4 30 30 H 1.08998 * 110.81322 * 157.71071 * 15 5 4 31 31 H 1.09004 * 109.46508 * 297.44956 * 18 16 2 32 32 H 1.09002 * 109.47067 * 57.44889 * 18 16 2 33 33 H 1.09004 * 109.47134 * 299.99187 * 19 18 16 34 34 H 1.09002 * 109.47611 * 59.99836 * 19 18 16 35 35 H 1.00892 * 111.00020 * 56.04084 * 20 19 18 36 36 H 1.00898 * 111.00285 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9091 1.0219 0.0000 4 6 2.0698 -0.7709 -1.2228 5 7 2.8325 -1.9275 -0.7052 6 6 3.9776 -2.2339 -1.5730 7 6 3.5037 -2.3831 -2.9958 8 1 2.4568 -2.2619 -3.2318 9 6 4.4070 -2.6732 -3.9964 10 7 5.6819 -2.8202 -3.7090 11 14 3.8195 -2.8588 -5.7599 12 1 2.3508 -2.6476 -5.8172 13 1 4.4976 -1.8526 -6.6159 14 1 4.1433 -4.2232 -6.2484 15 6 3.2847 -1.5384 0.6550 16 6 2.0664 -0.7713 1.2277 17 1 1.3159 -1.4659 1.6051 18 6 2.5051 0.1983 2.3270 19 6 2.9706 -0.5942 3.5501 20 7 3.3912 0.3368 4.6058 21 1 -0.3635 0.4802 0.9085 22 1 -0.3633 0.5466 -0.8703 23 1 -0.3634 -1.0269 -0.0384 24 1 2.7243 -0.1273 -1.8105 25 1 1.2405 -1.1186 -1.8388 26 1 4.7043 -1.4236 -1.5152 27 1 4.4430 -3.1635 -1.2458 28 1 6.3172 -3.0246 -4.4128 29 1 4.1574 -0.8876 0.5990 30 1 3.5022 -2.4201 1.2579 31 1 3.3251 0.8160 1.9606 32 1 1.6659 0.8361 2.6050 33 1 2.1506 -1.2118 3.9165 34 1 3.8097 -1.2319 3.2721 35 1 2.6499 0.9813 4.8358 36 1 3.7030 -0.1626 5.4252 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723885057.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:28 Heat of formation + Delta-G solvation = -17.218239 kcal Electronic energy + Delta-G solvation = -14501.369552 eV Core-core repulsion = 12212.309988 eV Total energy + Delta-G solvation = -2289.059565 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.81573 -35.42634 -33.47606 -31.87837 -30.65558 -27.49741 -25.85707 -24.83330 -22.80594 -21.12606 -19.95626 -19.32241 -16.17241 -16.04928 -15.28305 -14.83834 -14.58016 -14.12091 -13.87507 -13.25332 -12.92054 -12.70881 -12.37211 -11.92695 -11.61179 -11.55629 -11.30822 -11.09040 -10.90193 -10.61975 -10.43877 -10.16419 -10.06791 -9.92071 -9.73181 -9.05452 -8.79438 -8.44873 -7.23803 -6.01772 -4.03047 3.31639 3.38840 3.43741 4.42538 4.45398 4.89314 5.04504 5.06460 5.29556 5.32762 5.36849 5.49451 5.61705 5.77839 5.82345 5.86669 5.98095 6.16763 6.20198 6.22732 6.36491 6.41741 6.49018 6.65904 6.82058 6.83660 7.02366 7.27410 7.30944 7.43898 7.79393 8.03947 8.25674 8.55237 9.05204 9.61394 11.09705 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044733 B = 0.006843 C = 0.006110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.781241 B = 4090.947857 C = 4581.316794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.103 4.103 3 H 0.067 0.933 4 C 0.058 3.942 5 N -0.518 5.518 6 C 0.183 3.817 7 C -0.511 4.511 8 H 0.063 0.937 9 C 0.056 3.944 10 N -0.898 5.898 11 Si 0.897 3.103 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.284 1.284 15 C 0.039 3.961 16 C -0.086 4.086 17 H 0.076 0.924 18 C -0.106 4.106 19 C 0.060 3.940 20 N -0.854 5.854 21 H 0.046 0.954 22 H 0.051 0.949 23 H 0.057 0.943 24 H 0.044 0.956 25 H 0.068 0.932 26 H -0.008 1.008 27 H 0.031 0.969 28 H 0.261 0.739 29 H 0.036 0.964 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.025 0.975 34 H 0.075 0.925 35 H 0.337 0.663 36 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.633 5.804 12.024 15.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.122 4.122 3 H 0.085 0.915 4 C -0.071 4.071 5 N -0.242 5.242 6 C 0.057 3.943 7 C -0.550 4.550 8 H 0.081 0.919 9 C -0.146 4.146 10 N -0.537 5.537 11 Si 0.724 3.276 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.210 1.210 15 C -0.089 4.089 16 C -0.105 4.105 17 H 0.095 0.905 18 C -0.145 4.145 19 C -0.071 4.071 20 N -0.382 5.382 21 H 0.065 0.935 22 H 0.070 0.930 23 H 0.076 0.924 24 H 0.063 0.937 25 H 0.087 0.913 26 H 0.010 0.990 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.043 0.957 34 H 0.094 0.906 35 H 0.148 0.852 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.215 5.512 11.402 14.576 hybrid contribution -0.334 0.115 -0.526 0.634 sum -7.550 5.628 10.877 14.386 Atomic orbital electron populations 1.21779 0.95170 1.01795 1.00632 1.22166 0.95627 0.98879 0.95567 0.91489 1.22729 0.97971 0.91557 0.94805 1.64827 1.24050 1.33940 1.01421 1.19897 0.86955 0.95921 0.91488 1.21254 0.94493 1.47664 0.91588 0.91866 1.24998 0.94822 0.95474 0.99272 1.69968 1.01714 1.49039 1.32997 0.86459 0.78899 0.77659 0.84537 1.19668 1.21098 1.20968 1.23219 0.95261 0.97780 0.92646 1.22135 0.97872 0.96462 0.94063 0.90529 1.21584 1.00666 0.97841 0.94384 1.21859 0.99054 0.94218 0.91936 1.58734 1.43579 1.22330 1.13603 0.93518 0.92977 0.92357 0.93732 0.91316 0.99015 0.95070 0.92978 0.94538 0.91418 0.91242 0.92523 0.95719 0.90643 0.85153 0.84942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.90 37.15 0.33 -1.48 16 2 C -0.10 -1.62 3.18 -89.10 -0.28 -1.90 16 3 H 0.07 1.01 7.85 -51.93 -0.41 0.60 16 4 C 0.06 1.17 5.15 -2.59 -0.01 1.16 16 5 N -0.52 -11.65 5.39 -231.69 -1.25 -12.90 16 6 C 0.18 4.95 4.76 -4.97 -0.02 4.92 16 7 C -0.51 -14.69 8.42 -34.44 -0.29 -14.98 16 8 H 0.06 1.79 6.83 -52.49 -0.36 1.43 16 9 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 10 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 11 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 C 0.04 0.73 5.29 -1.90 -0.01 0.72 16 16 C -0.09 -1.28 2.60 -88.76 -0.23 -1.51 16 17 H 0.08 1.12 7.86 -51.93 -0.41 0.72 16 18 C -0.11 -1.35 4.85 -26.73 -0.13 -1.48 16 19 C 0.06 0.69 6.65 -3.82 -0.03 0.66 16 20 N -0.85 -8.67 9.62 -10.36 -0.10 -8.77 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.04 0.99 7.59 -51.93 -0.39 0.59 16 25 H 0.07 1.42 7.27 -51.93 -0.38 1.04 16 26 H -0.01 -0.23 7.89 -51.93 -0.41 -0.64 16 27 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.04 0.71 7.69 -51.93 -0.40 0.31 16 30 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 31 H 0.07 0.98 8.05 -51.93 -0.42 0.56 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.08 0.96 7.53 -51.93 -0.39 0.57 16 35 H 0.34 2.89 8.99 -39.30 -0.35 2.54 16 36 H 0.34 2.83 9.08 -39.29 -0.36 2.48 16 LS Contribution 286.29 15.07 4.31 4.31 Total: -1.00 -30.54 286.29 -8.46 -38.99 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -6.36 Total: 0.28 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -0.77 Total: -12.37 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: -0.61 Total: -48.12 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.54 -8.46 -38.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723885057.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.776 kcal (2) G-P(sol) polarization free energy of solvation -30.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds