Wall clock time and date at job start Mon Mar 30 2020 02:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08993 * 110.35493 * 2 1 4 4 C 1.54303 * 110.47802 * 237.77129 * 2 1 3 5 5 N 1.47898 * 107.08431 * 242.53709 * 4 2 1 6 6 C 1.46905 * 110.99929 * 214.00826 * 5 4 2 7 7 C 1.50700 * 109.46693 * 307.39776 * 6 5 4 8 8 H 1.07995 * 120.00346 * 0.02562 * 7 6 5 9 9 C 1.37886 * 119.99412 * 179.97438 * 7 6 5 10 10 N 1.31511 * 120.00432 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99621 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47191 * 0.02562 * 11 9 7 13 13 H 1.48495 * 109.46851 * 120.00157 * 11 9 7 14 14 H 1.48493 * 109.47276 * 240.00070 * 11 9 7 15 15 C 1.48530 * 105.82262 * 334.52107 * 5 4 2 16 16 C 1.54595 * 110.30574 * 122.13975 * 2 1 3 17 17 H 1.09003 * 110.72912 * 22.33517 * 16 2 1 18 18 C 1.53006 * 110.72391 * 259.23225 * 16 2 1 19 19 C 1.52997 * 109.47011 * 177.45385 * 18 16 2 20 20 N 1.46906 * 109.46969 * 180.02562 * 19 18 16 21 21 H 1.09001 * 109.47887 * 297.86120 * 1 2 3 22 22 H 1.09003 * 109.47067 * 57.86602 * 1 2 3 23 23 H 1.09000 * 109.47676 * 177.86058 * 1 2 3 24 24 H 1.08999 * 110.02067 * 123.10535 * 4 2 1 25 25 H 1.08997 * 109.94043 * 1.92266 * 4 2 1 26 26 H 1.09002 * 109.46856 * 67.39486 * 6 5 4 27 27 H 1.08994 * 109.47397 * 187.40057 * 6 5 4 28 28 H 0.96990 * 120.00330 * 179.97438 * 10 9 7 29 29 H 1.09000 * 110.67209 * 280.77196 * 15 5 4 30 30 H 1.08998 * 110.81322 * 157.71071 * 15 5 4 31 31 H 1.09004 * 109.46508 * 297.44956 * 18 16 2 32 32 H 1.09002 * 109.47067 * 57.44889 * 18 16 2 33 33 H 1.09004 * 109.47134 * 299.99187 * 19 18 16 34 34 H 1.09002 * 109.47611 * 59.99836 * 19 18 16 35 35 H 1.00892 * 111.00020 * 56.04084 * 20 19 18 36 36 H 1.00898 * 111.00285 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9091 1.0219 0.0000 4 6 2.0698 -0.7709 -1.2228 5 7 2.8325 -1.9275 -0.7052 6 6 3.9776 -2.2339 -1.5730 7 6 3.5037 -2.3831 -2.9958 8 1 2.4568 -2.2619 -3.2318 9 6 4.4070 -2.6732 -3.9964 10 7 5.6819 -2.8202 -3.7090 11 14 3.8195 -2.8588 -5.7599 12 1 2.3508 -2.6476 -5.8172 13 1 4.4976 -1.8526 -6.6159 14 1 4.1433 -4.2232 -6.2484 15 6 3.2847 -1.5384 0.6550 16 6 2.0664 -0.7713 1.2277 17 1 1.3159 -1.4659 1.6051 18 6 2.5051 0.1983 2.3270 19 6 2.9706 -0.5942 3.5501 20 7 3.3912 0.3368 4.6058 21 1 -0.3635 0.4802 0.9085 22 1 -0.3633 0.5466 -0.8703 23 1 -0.3634 -1.0269 -0.0384 24 1 2.7243 -0.1273 -1.8105 25 1 1.2405 -1.1186 -1.8388 26 1 4.7043 -1.4236 -1.5152 27 1 4.4430 -3.1635 -1.2458 28 1 6.3172 -3.0246 -4.4128 29 1 4.1574 -0.8876 0.5990 30 1 3.5022 -2.4201 1.2579 31 1 3.3251 0.8160 1.9606 32 1 1.6659 0.8361 2.6050 33 1 2.1506 -1.2118 3.9165 34 1 3.8097 -1.2319 3.2721 35 1 2.6499 0.9813 4.8358 36 1 3.7030 -0.1626 5.4252 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723885057.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:27 Heat of formation + Delta-G solvation = -40.171414 kcal Electronic energy + Delta-G solvation = -14502.364877 eV Core-core repulsion = 12212.309988 eV Total energy + Delta-G solvation = -2290.054889 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.29852 -36.61871 -35.23165 -33.70716 -31.82497 -29.34131 -27.30228 -26.40620 -24.33735 -22.63131 -21.36264 -20.78532 -18.29363 -17.19152 -16.86562 -16.28467 -16.09255 -15.47244 -15.07976 -14.71308 -14.56818 -14.14237 -13.69489 -13.67014 -13.26286 -13.05857 -12.70264 -12.69032 -12.42420 -12.26704 -12.17811 -11.62319 -11.47459 -11.43440 -11.25404 -11.08940 -10.67936 -9.58214 -9.12334 -8.25325 -6.36065 1.38227 1.39137 1.52976 2.37589 3.07781 3.33757 3.63633 3.75481 3.76477 4.07847 4.26345 4.37788 4.44183 4.55372 4.63086 4.68081 4.81203 4.82477 4.94184 4.99230 5.02154 5.11391 5.19018 5.26790 5.28293 5.33793 5.39041 5.57175 5.62688 5.94249 6.25862 6.26237 6.53097 6.64991 6.80872 7.34323 8.87276 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044733 B = 0.006843 C = 0.006110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.781241 B = 4090.947857 C = 4581.316794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.096 4.096 3 H 0.076 0.924 4 C 0.056 3.944 5 N -0.528 5.528 6 C 0.199 3.801 7 C -0.530 4.530 8 H 0.064 0.936 9 C 0.001 3.999 10 N -0.935 5.935 11 Si 0.973 3.027 12 H -0.262 1.262 13 H -0.277 1.277 14 H -0.276 1.276 15 C 0.036 3.964 16 C -0.071 4.071 17 H 0.089 0.911 18 C -0.097 4.097 19 C 0.063 3.937 20 N -0.861 5.861 21 H 0.075 0.925 22 H 0.057 0.943 23 H 0.052 0.948 24 H 0.015 0.985 25 H 0.063 0.937 26 H -0.040 1.040 27 H 0.001 0.999 28 H 0.265 0.735 29 H 0.021 0.979 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.038 0.962 34 H 0.057 0.943 35 H 0.348 0.652 36 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.622 6.550 12.598 17.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.115 4.115 3 H 0.094 0.906 4 C -0.072 4.072 5 N -0.252 5.252 6 C 0.072 3.928 7 C -0.568 4.568 8 H 0.082 0.918 9 C -0.197 4.197 10 N -0.575 5.575 11 Si 0.797 3.203 12 H -0.186 1.186 13 H -0.202 1.202 14 H -0.201 1.201 15 C -0.092 4.092 16 C -0.090 4.090 17 H 0.107 0.893 18 C -0.135 4.135 19 C -0.068 4.068 20 N -0.392 5.392 21 H 0.094 0.906 22 H 0.076 0.924 23 H 0.071 0.929 24 H 0.034 0.966 25 H 0.081 0.919 26 H -0.022 1.022 27 H 0.019 0.981 28 H 0.074 0.926 29 H 0.039 0.961 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.161 0.839 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.220 6.267 12.005 16.383 hybrid contribution 0.327 -0.117 -0.650 0.737 sum -8.893 6.150 11.355 15.680 Atomic orbital electron populations 1.21733 0.92619 1.01962 1.02437 1.22140 0.97629 0.98467 0.93243 0.90608 1.22756 0.96877 0.90777 0.96789 1.64713 1.22314 1.35740 1.02467 1.19534 0.87741 0.93311 0.92210 1.21539 0.94655 1.48019 0.92597 0.91800 1.25982 0.94816 0.94700 1.04246 1.70098 1.03072 1.49592 1.34771 0.85286 0.78811 0.77935 0.78315 1.18606 1.20232 1.20139 1.23319 0.96681 0.98356 0.90856 1.22071 0.95974 0.96581 0.94398 0.89274 1.21483 1.00968 0.97275 0.93812 1.21742 0.98838 0.94235 0.91996 1.58666 1.44177 1.22468 1.13924 0.90633 0.92390 0.92918 0.96620 0.91876 1.02202 0.98084 0.92570 0.96091 0.90943 0.92875 0.90036 0.94344 0.92415 0.83888 0.83743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.90 71.98 0.64 -2.41 16 2 C -0.10 -2.84 3.18 -9.81 -0.03 -2.88 16 3 H 0.08 2.15 7.85 -2.39 -0.02 2.13 16 4 C 0.06 2.31 5.15 86.55 0.45 2.75 16 5 N -0.53 -24.47 5.39 -886.95 -4.78 -29.25 16 6 C 0.20 11.32 4.76 85.56 0.41 11.73 16 7 C -0.53 -31.32 8.42 25.60 0.22 -31.10 16 8 H 0.06 3.68 6.83 -2.91 -0.02 3.66 16 9 C 0.00 0.04 5.46 84.66 0.46 0.50 16 10 N -0.94 -58.09 13.29 21.45 0.28 -57.80 16 11 Si 0.97 45.29 29.54 68.60 2.03 47.31 16 12 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 13 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 14 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 15 C 0.04 1.36 5.29 86.65 0.46 1.82 16 16 C -0.07 -1.99 2.60 -9.59 -0.02 -2.02 16 17 H 0.09 2.35 7.86 -2.39 -0.02 2.33 16 18 C -0.10 -2.22 4.85 30.60 0.15 -2.08 16 19 C 0.06 1.31 6.65 86.30 0.57 1.89 16 20 N -0.86 -15.53 9.62 -186.70 -1.80 -17.33 16 21 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.02 0.71 7.59 -2.39 -0.02 0.69 16 25 H 0.06 2.62 7.27 -2.39 -0.02 2.60 16 26 H -0.04 -2.45 7.89 -2.39 -0.02 -2.47 16 27 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 28 H 0.27 15.36 8.31 -92.72 -0.77 14.59 16 29 H 0.02 0.85 7.69 -2.39 -0.02 0.83 16 30 H 0.07 2.63 8.07 -2.39 -0.02 2.61 16 31 H 0.05 1.41 8.05 -2.38 -0.02 1.39 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.06 1.41 7.53 -2.39 -0.02 1.39 16 35 H 0.35 4.95 8.99 -89.70 -0.81 4.15 16 36 H 0.35 5.10 9.08 -89.70 -0.81 4.29 16 Total: -1.00 -67.45 286.29 -1.54 -69.00 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -0.57 Total: 9.87 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: 3.30 Total: -21.80 kcal Atomic # 7 Polarization: -98.08 SS G_CDS: -6.29 Total: -104.37 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -67.45 -1.54 -69.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723885057.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.824 kcal (2) G-P(sol) polarization free energy of solvation -67.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds