Wall clock time and date at job start Mon Mar 30 2020 02:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 110.27886 * 2 1 4 4 C 1.54003 * 110.30654 * 122.19224 * 2 1 3 5 5 N 1.47909 * 107.05435 * 117.68765 * 4 2 1 6 6 C 1.46904 * 110.99555 * 145.84449 * 5 4 2 7 7 C 1.50700 * 109.47191 * 52.60132 * 6 5 4 8 8 H 1.08002 * 119.99770 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00083 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00147 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00278 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47228 * 179.97438 * 11 9 7 13 13 H 1.48501 * 109.46793 * 300.00001 * 11 9 7 14 14 H 1.48500 * 109.47000 * 60.00094 * 11 9 7 15 15 C 1.48526 * 105.82213 * 25.32852 * 5 4 2 16 16 C 1.54602 * 110.30635 * 237.90358 * 2 1 3 17 17 H 1.08992 * 110.72258 * 337.48975 * 16 2 1 18 18 C 1.52996 * 110.87361 * 100.70193 * 16 2 1 19 19 C 1.52995 * 109.47309 * 180.02562 * 18 16 2 20 20 N 1.46896 * 109.47396 * 180.02562 * 19 18 16 21 21 H 1.09000 * 109.47360 * 182.09710 * 1 2 3 22 22 H 1.09007 * 109.46937 * 302.09709 * 1 2 3 23 23 H 1.08998 * 109.47089 * 62.08541 * 1 2 3 24 24 H 1.09002 * 109.91540 * 358.33567 * 4 2 1 25 25 H 1.08998 * 109.91708 * 237.03808 * 4 2 1 26 26 H 1.08994 * 109.47225 * 292.60360 * 6 5 4 27 27 H 1.08998 * 109.47151 * 172.60184 * 6 5 4 28 28 H 0.97005 * 119.99661 * 359.97438 * 10 9 7 29 29 H 1.09001 * 110.66702 * 79.22610 * 15 5 4 30 30 H 1.09004 * 110.66941 * 202.35391 * 15 5 4 31 31 H 1.09004 * 109.46949 * 300.04712 * 18 16 2 32 32 H 1.08999 * 109.47405 * 60.04035 * 18 16 2 33 33 H 1.09004 * 109.47323 * 300.00025 * 19 18 16 34 34 H 1.08999 * 109.47232 * 59.99472 * 19 18 16 35 35 H 1.00901 * 111.00321 * 180.02562 * 20 19 18 36 36 H 1.00904 * 110.99637 * 303.95168 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9078 1.0224 0.0000 4 6 2.0644 -0.7695 1.2223 5 7 2.8312 -1.9244 0.7065 6 6 3.9750 -2.2278 1.5769 7 6 3.4985 -2.3779 2.9987 8 1 2.4506 -2.2601 3.2322 9 6 4.3999 -2.6666 4.0011 10 7 5.6759 -2.8105 3.7166 11 14 3.8092 -2.8533 5.7634 12 1 4.9652 -3.1611 6.6430 13 1 3.1711 -1.5883 6.2082 14 1 2.8214 -3.9596 5.8397 15 6 3.2853 -1.5344 -0.6528 16 6 2.0665 -0.7704 -1.2283 17 1 1.3171 -1.4669 -1.6042 18 6 2.5047 0.1969 -2.3298 19 6 3.0284 -0.5977 -3.5277 20 7 3.4496 0.3310 -4.5850 21 1 -0.3634 -1.0270 0.0376 22 1 -0.3633 0.5461 0.8707 23 1 -0.3633 0.4811 -0.9081 24 1 1.2326 -1.1192 1.8337 25 1 2.7162 -0.1243 1.8113 26 1 4.6999 -1.4158 1.5206 27 1 4.4435 -3.1564 1.2508 28 1 5.9826 -2.7139 2.8015 29 1 4.1562 -0.8815 -0.5949 30 1 3.5045 -2.4174 -1.2533 31 1 1.6540 0.8038 -2.6398 32 1 3.2946 0.8453 -1.9508 33 1 3.8791 -1.2045 -3.2174 34 1 2.2386 -1.2464 -3.9067 35 1 3.7994 -0.1699 -5.3881 36 1 2.6955 0.9489 -4.8450 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723910947.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:30 Heat of formation + Delta-G solvation = -44.388787 kcal Electronic energy + Delta-G solvation = -14540.842738 eV Core-core repulsion = 12250.604971 eV Total energy + Delta-G solvation = -2290.237768 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.42781 -36.76406 -35.48533 -33.71570 -31.89636 -29.01311 -27.37108 -26.25455 -24.48777 -22.88043 -21.43388 -20.90518 -18.71902 -17.28296 -16.72409 -16.30273 -15.86273 -15.65502 -15.15972 -14.85957 -14.51002 -14.22567 -14.05654 -13.74181 -13.21665 -13.04217 -12.83270 -12.57771 -12.45920 -12.29824 -11.95982 -11.78512 -11.54901 -11.48306 -11.26693 -10.74731 -10.63803 -9.62313 -9.26273 -8.74659 -6.44820 1.50673 1.59787 1.79503 2.53379 3.09595 3.22085 3.53970 3.68143 3.69283 4.01056 4.19872 4.31621 4.34761 4.47683 4.56801 4.60631 4.64695 4.71838 4.82011 4.84910 4.88885 4.98694 5.09415 5.14853 5.20662 5.25988 5.32671 5.50329 5.68085 5.92334 6.21836 6.24747 6.33462 6.55889 6.61240 7.37011 8.65104 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044312 B = 0.006905 C = 0.006150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.731235 B = 4054.130840 C = 4551.536814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.096 4.096 3 H 0.076 0.924 4 C 0.058 3.942 5 N -0.524 5.524 6 C 0.185 3.815 7 C -0.606 4.606 8 H 0.056 0.944 9 C -0.037 4.037 10 N -0.936 5.936 11 Si 1.123 2.877 12 H -0.282 1.282 13 H -0.268 1.268 14 H -0.268 1.268 15 C 0.034 3.966 16 C -0.070 4.070 17 H 0.090 0.910 18 C -0.097 4.097 19 C 0.063 3.937 20 N -0.861 5.861 21 H 0.052 0.948 22 H 0.058 0.942 23 H 0.076 0.924 24 H 0.063 0.937 25 H 0.013 0.987 26 H -0.045 1.045 27 H -0.003 1.003 28 H 0.252 0.748 29 H 0.021 0.979 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.039 0.961 35 H 0.350 0.650 36 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.201 6.682 -13.001 17.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.115 4.115 3 H 0.095 0.905 4 C -0.070 4.070 5 N -0.248 5.248 6 C 0.058 3.942 7 C -0.644 4.644 8 H 0.075 0.925 9 C -0.235 4.235 10 N -0.573 5.573 11 Si 0.943 3.057 12 H -0.207 1.207 13 H -0.193 1.193 14 H -0.193 1.193 15 C -0.094 4.094 16 C -0.090 4.090 17 H 0.108 0.892 18 C -0.135 4.135 19 C -0.068 4.068 20 N -0.392 5.392 21 H 0.071 0.929 22 H 0.077 0.923 23 H 0.095 0.905 24 H 0.082 0.918 25 H 0.032 0.968 26 H -0.027 1.027 27 H 0.015 0.985 28 H 0.061 0.939 29 H 0.040 0.960 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.163 0.837 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.481 6.150 -10.951 15.737 hybrid contribution 0.021 0.293 -1.946 1.968 sum -9.460 6.443 -12.897 17.244 Atomic orbital electron populations 1.21743 0.92479 1.01988 1.02562 1.22101 0.97817 0.98471 0.93107 0.90546 1.22699 0.96805 0.90620 0.96872 1.64655 1.21610 1.36142 1.02348 1.19689 0.88627 0.92674 0.93213 1.22327 0.96465 1.52370 0.93193 0.92547 1.27519 0.93522 0.92689 1.09732 1.70929 1.16225 1.48396 1.21752 0.82876 0.75385 0.77964 0.69500 1.20681 1.19296 1.19333 1.23357 0.96865 0.98426 0.90707 1.22066 0.95848 0.96633 0.94407 0.89201 1.21473 1.00906 0.97210 0.93909 1.21734 0.98779 0.94172 0.92140 1.58673 1.41681 1.24308 1.14540 0.92929 0.92330 0.90490 0.91829 0.96817 1.02719 0.98533 0.93886 0.96026 0.90833 0.89873 0.92853 0.92509 0.94320 0.83711 0.83838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.88 71.98 0.64 -2.42 16 2 C -0.10 -2.85 3.17 -9.91 -0.03 -2.88 16 3 H 0.08 2.17 7.85 -2.39 -0.02 2.15 16 4 C 0.06 2.41 5.14 86.45 0.44 2.85 16 5 N -0.52 -24.31 5.39 -887.55 -4.78 -29.09 16 6 C 0.19 10.47 4.07 85.56 0.35 10.82 16 7 C -0.61 -36.10 8.42 25.60 0.22 -35.89 16 8 H 0.06 3.30 6.84 -2.91 -0.02 3.28 16 9 C -0.04 -2.23 5.46 84.65 0.46 -1.77 16 10 N -0.94 -59.78 13.65 21.45 0.29 -59.48 16 11 Si 1.12 51.48 29.90 68.60 2.05 53.53 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 14 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 15 C 0.03 1.29 5.18 86.65 0.45 1.74 16 16 C -0.07 -1.96 2.63 -9.59 -0.03 -1.98 16 17 H 0.09 2.35 7.86 -2.39 -0.02 2.34 16 18 C -0.10 -2.19 4.87 30.59 0.15 -2.04 16 19 C 0.06 1.30 6.63 86.30 0.57 1.87 16 20 N -0.86 -15.33 9.62 -186.73 -1.80 -17.13 16 21 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 22 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 23 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.06 2.67 7.26 -2.39 -0.02 2.65 16 25 H 0.01 0.63 7.59 -2.39 -0.02 0.61 16 26 H -0.04 -2.70 7.76 -2.39 -0.02 -2.72 16 27 H 0.00 -0.20 8.01 -2.39 -0.02 -0.22 16 28 H 0.25 16.43 7.22 -92.70 -0.67 15.76 16 29 H 0.02 0.87 7.73 -2.39 -0.02 0.85 16 30 H 0.07 2.64 8.04 -2.39 -0.02 2.62 16 31 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.05 1.40 8.10 -2.39 -0.02 1.38 16 33 H 0.06 1.38 7.42 -2.38 -0.02 1.36 16 34 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.35 5.04 9.08 -89.69 -0.81 4.23 16 36 H 0.35 4.87 8.99 -89.69 -0.81 4.07 16 Total: -1.00 -69.35 284.82 -1.49 -70.84 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -0.47 Total: 11.03 kcal Atomic # 6 Polarization: -32.92 SS G_CDS: 3.22 Total: -29.70 kcal Atomic # 7 Polarization: -99.42 SS G_CDS: -6.29 Total: -105.70 kcal Atomic # 14 Polarization: 51.48 SS G_CDS: 2.05 Total: 53.53 kcal Total: -69.35 -1.49 -70.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723910947.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.452 kcal (2) G-P(sol) polarization free energy of solvation -69.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds