Wall clock time and date at job start Mon Mar 30 2020 02:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 110.37181 * 2 1 4 4 C 1.54382 * 110.32148 * 122.17820 * 2 1 3 5 5 N 1.48561 * 104.59494 * 142.75155 * 4 2 1 6 6 C 1.46903 * 111.00104 * 200.96100 * 5 4 2 7 7 C 1.50697 * 109.47104 * 290.12395 * 6 5 4 8 8 H 1.08004 * 119.99870 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00346 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99416 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00283 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47131 * 0.02562 * 11 9 7 13 13 H 1.48507 * 109.46912 * 119.99850 * 11 9 7 14 14 H 1.48493 * 109.47196 * 239.99829 * 11 9 7 15 15 C 1.48725 * 104.28958 * 320.57391 * 5 4 2 16 16 C 1.54263 * 110.32893 * 237.81769 * 2 1 3 17 17 H 1.09000 * 110.32363 * 122.10657 * 16 2 1 18 18 C 1.53000 * 110.31949 * 359.97438 * 16 2 1 19 19 C 1.52997 * 109.47060 * 176.42756 * 18 16 2 20 20 N 1.46894 * 109.47515 * 180.02562 * 19 18 16 21 21 H 1.09000 * 109.47285 * 182.18143 * 1 2 3 22 22 H 1.08995 * 109.47344 * 302.18550 * 1 2 3 23 23 H 1.09005 * 109.46851 * 62.18285 * 1 2 3 24 24 H 1.09005 * 110.41172 * 261.52742 * 4 2 1 25 25 H 1.08996 * 110.41296 * 23.85263 * 4 2 1 26 26 H 1.09000 * 109.46973 * 50.12509 * 6 5 4 27 27 H 1.08998 * 109.47219 * 170.12615 * 6 5 4 28 28 H 0.97004 * 119.99671 * 180.02562 * 10 9 7 29 29 H 1.08994 * 110.38747 * 280.64259 * 15 5 4 30 30 H 1.08995 * 110.51220 * 158.14177 * 15 5 4 31 31 H 1.09002 * 109.47398 * 296.42925 * 18 16 2 32 32 H 1.09001 * 109.47194 * 56.43106 * 18 16 2 33 33 H 1.09002 * 109.47153 * 300.00319 * 19 18 16 34 34 H 1.08998 * 109.47533 * 59.99948 * 19 18 16 35 35 H 1.00903 * 111.00455 * 179.97438 * 20 19 18 36 36 H 1.00899 * 111.00176 * 303.95826 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0661 -0.7710 1.2254 5 7 3.2693 -1.4828 0.7227 6 6 3.6067 -2.6217 1.5871 7 6 4.1189 -2.1136 2.9102 8 1 4.1865 -1.0510 3.0910 9 6 4.5011 -3.0053 3.8898 10 7 4.4192 -4.2993 3.6694 11 14 5.1366 -2.3756 5.5296 12 1 5.1312 -0.8906 5.5252 13 1 4.2612 -2.8701 6.6226 14 1 6.5218 -2.8655 5.7448 15 6 2.8823 -1.9422 -0.6379 16 6 2.0659 -0.7705 -1.2243 17 1 2.7068 -0.1262 -1.8262 18 6 0.9050 -1.3018 -2.0675 19 6 1.4559 -1.9845 -3.3210 20 7 0.3414 -2.4942 -4.1310 21 1 -0.3634 -1.0269 0.0391 22 1 -0.3634 0.5474 0.8697 23 1 -0.3633 0.4796 -0.9090 24 1 2.3393 -0.0778 2.0210 25 1 1.3220 -1.4833 1.5817 26 1 2.7169 -3.2295 1.7510 27 1 4.3765 -3.2263 1.1075 28 1 4.6878 -4.9267 4.3588 29 1 2.2674 -2.8400 -0.5749 30 1 3.7685 -2.1290 -1.2444 31 1 0.3317 -2.0220 -1.4837 32 1 0.2588 -0.4738 -2.3590 33 1 2.0292 -1.2643 -3.9048 34 1 2.1021 -2.8125 -3.0297 35 1 0.6795 -2.9495 -4.9655 36 1 -0.2433 -3.1148 -3.5916 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723910950.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:33 Heat of formation + Delta-G solvation = -12.732449 kcal Electronic energy + Delta-G solvation = -14571.630052 eV Core-core repulsion = 12282.765006 eV Total energy + Delta-G solvation = -2288.865046 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.02653 -35.37894 -33.53036 -32.00970 -30.31129 -27.74986 -25.70721 -25.03258 -22.63034 -21.57797 -20.13088 -18.59687 -16.32380 -15.78006 -15.73316 -15.12451 -14.57013 -13.88007 -13.82885 -13.51365 -13.18671 -12.68094 -12.14120 -12.03488 -11.61645 -11.38024 -11.22570 -11.13396 -10.92339 -10.56844 -10.45047 -10.21091 -10.08343 -9.86757 -9.76380 -9.14094 -8.77382 -8.42917 -7.35235 -6.02244 -4.03275 3.31446 3.38590 3.44115 4.43261 4.46755 4.92054 4.97860 5.03566 5.24537 5.34572 5.40443 5.54774 5.62401 5.72726 5.84482 5.85600 5.99613 6.03775 6.14737 6.21382 6.28925 6.40608 6.50310 6.62317 6.75424 6.76649 7.03071 7.20320 7.31392 7.32400 7.79076 8.01536 8.20334 8.53073 9.05094 9.61149 11.09077 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.047223 B = 0.006749 C = 0.006212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.795372 B = 4147.941111 C = 4506.587968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 H 0.072 0.928 4 C 0.052 3.948 5 N -0.510 5.510 6 C 0.182 3.818 7 C -0.504 4.504 8 H 0.063 0.937 9 C 0.054 3.946 10 N -0.900 5.900 11 Si 0.898 3.102 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.284 1.284 15 C 0.036 3.964 16 C -0.087 4.087 17 H 0.073 0.927 18 C -0.109 4.109 19 C 0.057 3.943 20 N -0.855 5.855 21 H 0.054 0.946 22 H 0.050 0.950 23 H 0.054 0.946 24 H 0.074 0.926 25 H 0.036 0.964 26 H -0.008 1.008 27 H 0.029 0.971 28 H 0.260 0.740 29 H 0.032 0.968 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.029 0.971 35 H 0.338 0.662 36 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.382 4.935 -10.849 14.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 H 0.091 0.909 4 C -0.076 4.076 5 N -0.234 5.234 6 C 0.057 3.943 7 C -0.543 4.543 8 H 0.081 0.919 9 C -0.147 4.147 10 N -0.540 5.540 11 Si 0.726 3.274 12 H -0.196 1.196 13 H -0.211 1.211 14 H -0.210 1.210 15 C -0.092 4.092 16 C -0.106 4.106 17 H 0.091 0.909 18 C -0.147 4.147 19 C -0.074 4.074 20 N -0.383 5.383 21 H 0.073 0.927 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.092 0.908 25 H 0.054 0.946 26 H 0.010 0.990 27 H 0.047 0.953 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.048 0.952 35 H 0.150 0.850 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.069 5.862 -10.812 14.185 hybrid contribution 0.178 -1.439 1.187 1.874 sum -6.890 4.423 -9.625 12.636 Atomic orbital electron populations 1.21927 0.95500 1.01594 1.01020 1.21955 0.94839 0.99492 0.95176 0.90928 1.22962 0.91760 0.97087 0.95813 1.65474 1.30833 1.25859 1.01210 1.19866 0.95376 0.87326 0.91769 1.21185 1.42068 0.93391 0.97669 0.91884 1.25003 0.95974 0.94802 0.98939 1.69977 1.48750 1.01083 1.34213 0.86435 0.78458 0.79072 0.83444 1.19629 1.21116 1.20995 1.23139 0.97639 0.95332 0.93105 1.21903 0.95887 0.97041 0.95781 0.90856 1.21759 0.97866 1.00311 0.94725 1.21886 0.92336 0.98538 0.94606 1.58767 1.23123 1.45892 1.10548 0.92683 0.93084 0.92664 0.90774 0.94590 0.99027 0.95314 0.93017 0.94966 0.91461 0.92079 0.91007 0.91251 0.95229 0.85039 0.84925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 7.93 37.15 0.29 -1.57 16 2 C -0.10 -1.47 3.65 -89.24 -0.33 -1.80 16 3 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 4 C 0.05 1.04 5.51 -2.18 -0.01 1.02 16 5 N -0.51 -11.41 5.36 -231.26 -1.24 -12.65 16 6 C 0.18 4.90 4.57 -4.98 -0.02 4.88 16 7 C -0.50 -14.54 8.82 -34.44 -0.30 -14.84 16 8 H 0.06 1.81 7.61 -52.48 -0.40 1.41 16 9 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 10 N -0.90 -27.20 13.29 55.43 0.74 -26.47 16 11 Si 0.90 21.96 29.54 -169.99 -5.02 16.93 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 15 C 0.04 0.67 5.24 -2.09 -0.01 0.66 16 16 C -0.09 -1.28 3.07 -89.23 -0.27 -1.56 16 17 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 18 C -0.11 -1.37 3.67 -26.73 -0.10 -1.46 16 19 C 0.06 0.66 6.64 -3.83 -0.03 0.63 16 20 N -0.85 -8.75 9.62 -10.37 -0.10 -8.85 16 21 H 0.05 0.74 6.85 -51.93 -0.36 0.38 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.05 0.63 6.70 -51.93 -0.35 0.28 16 24 H 0.07 1.53 7.94 -51.93 -0.41 1.12 16 25 H 0.04 0.75 7.51 -51.93 -0.39 0.36 16 26 H -0.01 -0.23 7.88 -51.93 -0.41 -0.64 16 27 H 0.03 0.83 8.13 -51.93 -0.42 0.40 16 28 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.03 0.61 7.63 -51.93 -0.40 0.21 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.06 0.81 6.89 -51.93 -0.36 0.45 16 32 H 0.07 0.87 6.57 -51.93 -0.34 0.53 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.03 0.36 7.53 -51.93 -0.39 -0.03 16 35 H 0.34 2.87 9.08 -39.29 -0.36 2.51 16 36 H 0.34 3.21 8.99 -39.29 -0.35 2.86 16 LS Contribution 282.04 15.07 4.25 4.25 Total: -1.00 -30.46 282.04 -8.43 -38.89 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -6.18 Total: 0.48 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -0.88 Total: -12.58 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: -0.60 Total: -47.97 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.46 -8.43 -38.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723910950.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.154 kcal (2) G-P(sol) polarization free energy of solvation -30.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds