Wall clock time and date at job start Mon Mar 30 2020 02:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.36688 * 2 1 4 4 C 1.54374 * 110.32579 * 237.81740 * 2 1 3 5 5 N 1.48557 * 104.59752 * 217.25199 * 4 2 1 6 6 C 1.46895 * 111.00514 * 159.03426 * 5 4 2 7 7 C 1.50702 * 109.46770 * 69.87293 * 6 5 4 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99942 * 179.72214 * 7 6 5 10 10 N 1.31514 * 119.99698 * 0.28408 * 9 7 6 11 11 Si 1.86794 * 119.99837 * 180.27476 * 9 7 6 12 12 H 1.48504 * 109.47196 * 60.00645 * 11 9 7 13 13 H 1.48504 * 109.46887 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47679 * 300.00280 * 11 9 7 15 15 C 1.48571 * 104.22096 * 39.47944 * 5 4 2 16 16 C 1.54255 * 110.32398 * 122.17499 * 2 1 3 17 17 H 1.09001 * 110.32927 * 237.89436 * 16 2 1 18 18 C 1.52996 * 110.32562 * 0.02562 * 16 2 1 19 19 C 1.53006 * 109.47688 * 184.99596 * 18 16 2 20 20 N 1.46890 * 109.47557 * 179.97438 * 19 18 16 21 21 H 1.08995 * 109.46784 * 180.73341 * 1 2 3 22 22 H 1.09002 * 109.46681 * 300.73456 * 1 2 3 23 23 H 1.09001 * 109.46851 * 60.72928 * 1 2 3 24 24 H 1.08993 * 110.41462 * 98.47047 * 4 2 1 25 25 H 1.09005 * 110.40739 * 336.02408 * 4 2 1 26 26 H 1.09004 * 109.47258 * 309.87617 * 6 5 4 27 27 H 1.08994 * 109.47601 * 189.87209 * 6 5 4 28 28 H 0.97005 * 119.99651 * 179.97438 * 10 9 7 29 29 H 1.08995 * 110.40686 * 79.29633 * 15 5 4 30 30 H 1.08997 * 110.41031 * 201.74410 * 15 5 4 31 31 H 1.09000 * 109.47433 * 304.99852 * 18 16 2 32 32 H 1.09000 * 109.47220 * 64.99827 * 18 16 2 33 33 H 1.09000 * 109.46892 * 300.00586 * 19 18 16 34 34 H 1.09007 * 109.46828 * 59.99515 * 19 18 16 35 35 H 1.00905 * 111.00300 * 179.97438 * 20 19 18 36 36 H 1.00894 * 111.00549 * 303.95616 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0662 -0.7710 -1.2252 5 7 3.2693 -1.4828 -0.7224 6 6 3.6068 -2.6217 -1.5866 7 6 4.1190 -2.1138 -2.9098 8 1 4.1874 -1.0512 -3.0905 9 6 4.5062 -3.0057 -3.8875 10 7 4.4233 -4.2996 -3.6673 11 14 5.1482 -2.3760 -5.5247 12 1 6.3588 -1.5468 -5.2959 13 1 5.4939 -3.5273 -6.3966 14 1 4.1020 -1.5534 -6.1835 15 6 2.8806 -1.9421 0.6360 16 6 2.0658 -0.7703 1.2244 17 1 2.7067 -0.1261 1.8263 18 6 0.9050 -1.3016 2.0676 19 6 1.4540 -1.9528 3.3387 20 7 0.3395 -2.4623 4.1486 21 1 -0.3633 -1.0275 0.0132 22 1 -0.3633 0.5252 0.8834 23 1 -0.3633 0.5025 -0.8965 24 1 2.3394 -0.0780 -2.0208 25 1 1.3229 -1.4849 -1.5802 26 1 2.7170 -3.2296 -1.7506 27 1 4.3765 -3.2263 -1.1070 28 1 4.6953 -4.9270 -4.3552 29 1 2.2648 -2.8391 0.5721 30 1 3.7670 -2.1307 1.2416 31 1 0.2450 -0.4772 2.3377 32 1 0.3468 -2.0406 1.4929 33 1 2.1140 -2.7771 3.0686 34 1 2.0123 -1.2138 3.9135 35 1 0.6764 -2.8978 4.9941 36 1 -0.3207 -1.7285 4.3577 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723910955.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:36 Heat of formation + Delta-G solvation = -12.108782 kcal Electronic energy + Delta-G solvation = -14562.056408 eV Core-core repulsion = 12273.218406 eV Total energy + Delta-G solvation = -2288.838002 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.01864 -35.39169 -33.51776 -31.99169 -30.31432 -27.73079 -25.69469 -25.02251 -22.62737 -21.56413 -20.09071 -18.57768 -16.35286 -16.11408 -15.48957 -14.69741 -14.60199 -14.24214 -13.83971 -13.56499 -13.03646 -12.55107 -12.20295 -12.01707 -11.54412 -11.41757 -11.28470 -11.04942 -10.91552 -10.59617 -10.41838 -10.16789 -10.08104 -9.85671 -9.73638 -9.13793 -8.78236 -8.39622 -7.32493 -5.99162 -4.00409 3.36010 3.39553 3.42896 4.43923 4.46922 4.91798 4.99820 5.02105 5.29623 5.34549 5.37349 5.54317 5.64385 5.66599 5.85554 5.86494 6.00032 6.09570 6.14777 6.23294 6.31725 6.44016 6.46895 6.64721 6.76849 6.78759 7.03435 7.23381 7.31942 7.35770 7.81338 8.04460 8.23336 8.56099 9.07181 9.63651 11.12015 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.048017 B = 0.006709 C = 0.006181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.991301 B = 4172.796576 C = 4528.618398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 H 0.071 0.929 4 C 0.052 3.948 5 N -0.510 5.510 6 C 0.183 3.817 7 C -0.506 4.506 8 H 0.061 0.939 9 C 0.055 3.945 10 N -0.900 5.900 11 Si 0.898 3.102 12 H -0.276 1.276 13 H -0.288 1.288 14 H -0.277 1.277 15 C 0.036 3.964 16 C -0.086 4.086 17 H 0.071 0.929 18 C -0.109 4.109 19 C 0.058 3.942 20 N -0.853 5.853 21 H 0.057 0.943 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.074 0.926 25 H 0.037 0.963 26 H -0.007 1.007 27 H 0.029 0.971 28 H 0.261 0.739 29 H 0.036 0.964 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.023 0.977 35 H 0.338 0.662 36 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.485 6.666 11.833 15.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 H 0.090 0.910 4 C -0.076 4.076 5 N -0.234 5.234 6 C 0.057 3.943 7 C -0.545 4.545 8 H 0.080 0.920 9 C -0.146 4.146 10 N -0.539 5.539 11 Si 0.726 3.274 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.203 1.203 15 C -0.093 4.093 16 C -0.106 4.106 17 H 0.089 0.911 18 C -0.147 4.147 19 C -0.073 4.073 20 N -0.382 5.382 21 H 0.076 0.924 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.092 0.908 25 H 0.055 0.945 26 H 0.011 0.989 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.042 0.958 35 H 0.150 0.850 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.100 6.338 11.108 14.628 hybrid contribution 0.090 0.266 -0.260 0.383 sum -7.010 6.604 10.848 14.507 Atomic orbital electron populations 1.21926 0.95532 1.01740 1.00843 1.21955 0.94816 0.99419 0.95284 0.91038 1.22956 0.91826 0.97098 0.95745 1.65455 1.30788 1.25893 1.01277 1.19858 0.95434 0.87308 0.91689 1.21109 1.42263 0.93283 0.97843 0.92036 1.24997 0.95974 0.94803 0.98874 1.69956 1.48490 1.01059 1.34439 0.86555 0.79406 0.78136 0.83271 1.20168 1.21356 1.20291 1.23117 0.97668 0.95426 0.93048 1.21898 0.95870 0.97066 0.95761 0.91087 1.21771 0.97786 0.99826 0.95315 1.21895 0.92647 0.98426 0.94299 1.58707 1.18073 1.36480 1.24939 0.92422 0.92980 0.93054 0.90803 0.94504 0.98936 0.95285 0.92902 0.94575 0.91480 0.92080 0.90977 0.90752 0.95835 0.84964 0.85157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 7.91 37.16 0.29 -1.57 16 2 C -0.10 -1.48 3.65 -89.24 -0.33 -1.80 16 3 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 4 C 0.05 1.04 5.51 -2.19 -0.01 1.03 16 5 N -0.51 -11.50 5.36 -231.41 -1.24 -12.74 16 6 C 0.18 4.95 4.57 -4.98 -0.02 4.93 16 7 C -0.51 -14.67 8.82 -34.44 -0.30 -14.97 16 8 H 0.06 1.76 7.61 -52.49 -0.40 1.36 16 9 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 10 N -0.90 -27.34 13.29 55.43 0.74 -26.61 16 11 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 C 0.04 0.67 5.30 -2.17 -0.01 0.66 16 16 C -0.09 -1.28 3.06 -89.24 -0.27 -1.56 16 17 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 18 C -0.11 -1.37 3.67 -26.73 -0.10 -1.47 16 19 C 0.06 0.67 6.66 -3.83 -0.03 0.65 16 20 N -0.85 -8.73 9.62 -10.37 -0.10 -8.83 16 21 H 0.06 0.78 6.76 -51.93 -0.35 0.43 16 22 H 0.05 0.58 6.85 -51.93 -0.36 0.22 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.07 1.53 7.94 -51.93 -0.41 1.12 16 25 H 0.04 0.77 7.54 -51.93 -0.39 0.38 16 26 H -0.01 -0.21 7.88 -51.93 -0.41 -0.62 16 27 H 0.03 0.84 8.13 -51.93 -0.42 0.42 16 28 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.04 0.70 7.60 -51.93 -0.39 0.31 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.06 0.69 6.56 -51.93 -0.34 0.35 16 32 H 0.07 1.03 6.86 -51.93 -0.36 0.67 16 33 H 0.07 0.96 7.58 -51.93 -0.39 0.56 16 34 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.34 2.86 9.08 -39.29 -0.36 2.51 16 36 H 0.34 2.90 8.99 -39.29 -0.35 2.55 16 LS Contribution 282.14 15.07 4.25 4.25 Total: -1.00 -30.72 282.14 -8.43 -39.15 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -6.19 Total: 0.36 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -0.88 Total: -12.62 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: -0.60 Total: -48.18 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.72 -8.43 -39.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723910955.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.043 kcal (2) G-P(sol) polarization free energy of solvation -30.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds