Wall clock time and date at job start Mon Mar 30 2020 02:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.36688 * 2 1 4 4 C 1.54374 * 110.32579 * 237.81740 * 2 1 3 5 5 N 1.48557 * 104.59752 * 217.25199 * 4 2 1 6 6 C 1.46895 * 111.00514 * 159.03426 * 5 4 2 7 7 C 1.50702 * 109.46770 * 69.87293 * 6 5 4 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99942 * 179.72214 * 7 6 5 10 10 N 1.31514 * 119.99698 * 0.28408 * 9 7 6 11 11 Si 1.86794 * 119.99837 * 180.27476 * 9 7 6 12 12 H 1.48504 * 109.47196 * 60.00645 * 11 9 7 13 13 H 1.48504 * 109.46887 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47679 * 300.00280 * 11 9 7 15 15 C 1.48571 * 104.22096 * 39.47944 * 5 4 2 16 16 C 1.54255 * 110.32398 * 122.17499 * 2 1 3 17 17 H 1.09001 * 110.32927 * 237.89436 * 16 2 1 18 18 C 1.52996 * 110.32562 * 0.02562 * 16 2 1 19 19 C 1.53006 * 109.47688 * 184.99596 * 18 16 2 20 20 N 1.46890 * 109.47557 * 179.97438 * 19 18 16 21 21 H 1.08995 * 109.46784 * 180.73341 * 1 2 3 22 22 H 1.09002 * 109.46681 * 300.73456 * 1 2 3 23 23 H 1.09001 * 109.46851 * 60.72928 * 1 2 3 24 24 H 1.08993 * 110.41462 * 98.47047 * 4 2 1 25 25 H 1.09005 * 110.40739 * 336.02408 * 4 2 1 26 26 H 1.09004 * 109.47258 * 309.87617 * 6 5 4 27 27 H 1.08994 * 109.47601 * 189.87209 * 6 5 4 28 28 H 0.97005 * 119.99651 * 179.97438 * 10 9 7 29 29 H 1.08995 * 110.40686 * 79.29633 * 15 5 4 30 30 H 1.08997 * 110.41031 * 201.74410 * 15 5 4 31 31 H 1.09000 * 109.47433 * 304.99852 * 18 16 2 32 32 H 1.09000 * 109.47220 * 64.99827 * 18 16 2 33 33 H 1.09000 * 109.46892 * 300.00586 * 19 18 16 34 34 H 1.09007 * 109.46828 * 59.99515 * 19 18 16 35 35 H 1.00905 * 111.00300 * 179.97438 * 20 19 18 36 36 H 1.00894 * 111.00549 * 303.95616 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0219 0.0000 4 6 2.0662 -0.7710 -1.2252 5 7 3.2693 -1.4828 -0.7224 6 6 3.6068 -2.6217 -1.5866 7 6 4.1190 -2.1138 -2.9098 8 1 4.1874 -1.0512 -3.0905 9 6 4.5062 -3.0057 -3.8875 10 7 4.4233 -4.2996 -3.6673 11 14 5.1482 -2.3760 -5.5247 12 1 6.3588 -1.5468 -5.2959 13 1 5.4939 -3.5273 -6.3966 14 1 4.1020 -1.5534 -6.1835 15 6 2.8806 -1.9421 0.6360 16 6 2.0658 -0.7703 1.2244 17 1 2.7067 -0.1261 1.8263 18 6 0.9050 -1.3016 2.0676 19 6 1.4540 -1.9528 3.3387 20 7 0.3395 -2.4623 4.1486 21 1 -0.3633 -1.0275 0.0132 22 1 -0.3633 0.5252 0.8834 23 1 -0.3633 0.5025 -0.8965 24 1 2.3394 -0.0780 -2.0208 25 1 1.3229 -1.4849 -1.5802 26 1 2.7170 -3.2296 -1.7506 27 1 4.3765 -3.2263 -1.1070 28 1 4.6953 -4.9270 -4.3552 29 1 2.2648 -2.8391 0.5721 30 1 3.7670 -2.1307 1.2416 31 1 0.2450 -0.4772 2.3377 32 1 0.3468 -2.0406 1.4929 33 1 2.1140 -2.7771 3.0686 34 1 2.0123 -1.2138 3.9135 35 1 0.6764 -2.8978 4.9941 36 1 -0.3207 -1.7285 4.3577 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723910955.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:35 Heat of formation + Delta-G solvation = -35.329015 kcal Electronic energy + Delta-G solvation = -14563.063313 eV Core-core repulsion = 12273.218406 eV Total energy + Delta-G solvation = -2289.844907 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.45539 -36.64314 -35.20760 -33.82161 -31.51352 -29.56109 -27.05865 -26.67445 -24.17919 -22.92321 -21.78121 -19.86810 -18.43187 -17.35945 -16.89892 -16.40535 -15.78128 -15.52810 -15.22006 -15.13397 -14.61538 -14.06380 -13.66160 -13.54899 -13.07185 -12.99415 -12.86445 -12.60536 -12.41678 -12.30049 -12.08369 -11.70203 -11.41504 -11.35838 -11.29661 -11.06249 -10.63659 -9.57441 -9.20580 -8.23672 -6.34946 1.38865 1.43019 1.51129 2.38604 3.08440 3.35606 3.61565 3.71362 3.80054 4.16325 4.27145 4.33659 4.40190 4.56897 4.64613 4.68883 4.77405 4.80303 4.83048 4.97571 5.07816 5.10446 5.12360 5.14426 5.32554 5.36352 5.39582 5.58222 5.62586 5.97510 6.23506 6.26715 6.50015 6.65567 6.80558 7.35225 8.87954 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.048017 B = 0.006709 C = 0.006181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.991301 B = 4172.796576 C = 4528.618398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.087 4.087 3 H 0.087 0.913 4 C 0.049 3.951 5 N -0.523 5.523 6 C 0.199 3.801 7 C -0.528 4.528 8 H 0.061 0.939 9 C 0.000 4.000 10 N -0.936 5.936 11 Si 0.974 3.026 12 H -0.267 1.267 13 H -0.281 1.281 14 H -0.266 1.266 15 C 0.034 3.966 16 C -0.075 4.075 17 H 0.088 0.912 18 C -0.099 4.099 19 C 0.060 3.940 20 N -0.861 5.861 21 H 0.047 0.953 22 H 0.082 0.918 23 H 0.055 0.945 24 H 0.062 0.938 25 H 0.017 0.983 26 H -0.039 1.039 27 H -0.001 1.001 28 H 0.266 0.734 29 H 0.020 0.980 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.039 0.961 35 H 0.349 0.651 36 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.100 8.619 12.463 17.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.106 4.106 3 H 0.105 0.895 4 C -0.079 4.079 5 N -0.246 5.246 6 C 0.072 3.928 7 C -0.566 4.566 8 H 0.079 0.921 9 C -0.198 4.198 10 N -0.576 5.576 11 Si 0.797 3.203 12 H -0.192 1.192 13 H -0.206 1.206 14 H -0.191 1.191 15 C -0.094 4.094 16 C -0.095 4.095 17 H 0.107 0.893 18 C -0.137 4.137 19 C -0.070 4.070 20 N -0.392 5.392 21 H 0.066 0.934 22 H 0.100 0.900 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.036 0.964 26 H -0.022 1.022 27 H 0.017 0.983 28 H 0.074 0.926 29 H 0.039 0.961 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.162 0.838 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.731 8.306 11.766 16.346 hybrid contribution 0.277 -0.380 -0.409 0.623 sum -7.454 7.927 11.357 15.728 Atomic orbital electron populations 1.21888 0.93291 1.01697 1.02587 1.21941 0.96625 0.99261 0.92779 0.89509 1.23004 0.90463 0.96606 0.97832 1.65349 1.32791 1.24110 1.02388 1.19491 0.93065 0.88117 0.92098 1.21409 1.42834 0.93397 0.98925 0.92076 1.25986 0.95833 0.94880 1.03070 1.70093 1.49116 1.02468 1.35942 0.85375 0.79057 0.77822 0.77996 1.19173 1.20571 1.19121 1.23205 0.98285 0.96719 0.91208 1.21863 0.96364 0.95363 0.95865 0.89319 1.21667 0.96866 1.00161 0.95031 1.21780 0.92913 0.98061 0.94277 1.58637 1.17931 1.37087 1.25587 0.93417 0.89958 0.92560 0.91986 0.96426 1.02157 0.98264 0.92570 0.96119 0.91260 0.89481 0.92898 0.92732 0.94309 0.83792 0.83845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 7.91 71.98 0.57 -2.65 16 2 C -0.09 -2.53 3.65 -9.90 -0.04 -2.56 16 3 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 4 C 0.05 2.00 5.51 86.45 0.48 2.47 16 5 N -0.52 -24.28 5.36 -886.06 -4.75 -29.03 16 6 C 0.20 11.37 4.57 85.56 0.39 11.76 16 7 C -0.53 -31.44 8.82 25.60 0.23 -31.21 16 8 H 0.06 3.56 7.61 -2.91 -0.02 3.54 16 9 C 0.00 0.01 5.46 84.66 0.46 0.48 16 10 N -0.94 -58.32 13.29 21.45 0.28 -58.04 16 11 Si 0.97 45.47 29.54 68.60 2.03 47.49 16 12 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 13 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 14 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 15 C 0.03 1.29 5.30 86.45 0.46 1.75 16 16 C -0.08 -2.09 3.06 -9.90 -0.03 -2.12 16 17 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 18 C -0.10 -2.28 3.67 30.59 0.11 -2.16 16 19 C 0.06 1.28 6.66 86.31 0.57 1.86 16 20 N -0.86 -15.75 9.62 -186.72 -1.80 -17.55 16 21 H 0.05 1.22 6.76 -2.39 -0.02 1.20 16 22 H 0.08 1.46 6.85 -2.39 -0.02 1.45 16 23 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.06 2.61 7.94 -2.39 -0.02 2.59 16 25 H 0.02 0.77 7.54 -2.38 -0.02 0.75 16 26 H -0.04 -2.43 7.88 -2.38 -0.02 -2.45 16 27 H 0.00 -0.05 8.13 -2.39 -0.02 -0.07 16 28 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 29 H 0.02 0.84 7.60 -2.39 -0.02 0.82 16 30 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.09 1.59 6.56 -2.39 -0.02 1.57 16 32 H 0.05 1.44 6.86 -2.39 -0.02 1.43 16 33 H 0.05 1.37 7.58 -2.39 -0.02 1.35 16 34 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 35 H 0.35 5.20 9.08 -89.69 -0.81 4.38 16 36 H 0.35 4.99 8.99 -89.70 -0.81 4.18 16 Total: -1.00 -67.97 282.14 -1.60 -69.57 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -0.57 Total: 9.95 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: 3.20 Total: -22.39 kcal Atomic # 7 Polarization: -98.35 SS G_CDS: -6.26 Total: -104.62 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -67.97 -1.60 -69.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723910955.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.237 kcal (2) G-P(sol) polarization free energy of solvation -67.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds