Wall clock time and date at job start Mon Mar 30 2020 03:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.47211 * 2 1 4 4 C 1.53002 * 109.47143 * 239.99490 * 2 1 3 5 5 C 1.50699 * 109.47073 * 173.69765 * 4 2 1 6 6 H 1.08001 * 119.99860 * 354.81271 * 5 4 2 7 7 C 1.37873 * 119.99984 * 174.80844 * 5 4 2 8 8 N 1.31516 * 119.99973 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00159 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47235 * 89.99934 * 9 7 5 11 11 H 1.48494 * 109.47228 * 209.99918 * 9 7 5 12 12 H 1.48501 * 109.46838 * 330.00229 * 9 7 5 13 13 N 1.46897 * 109.47133 * 119.99519 * 2 1 3 14 14 C 1.47962 * 111.00007 * 302.21377 * 13 2 1 15 15 C 1.53938 * 86.17757 * 222.41198 * 14 13 2 16 16 N 1.46904 * 113.73145 * 138.07665 * 15 14 13 17 17 C 1.46899 * 110.99962 * 68.17224 * 16 15 14 18 18 C 1.46901 * 111.00169 * 192.12429 * 16 15 14 19 19 C 1.48184 * 111.07355 * 202.77462 * 13 2 1 20 20 H 1.08994 * 109.47200 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.46959 * 300.00558 * 1 2 3 22 22 H 1.09004 * 109.46773 * 60.00332 * 1 2 3 23 23 H 1.08997 * 109.47024 * 293.70544 * 4 2 1 24 24 H 1.09002 * 109.46743 * 53.70435 * 4 2 1 25 25 H 0.97006 * 119.99996 * 180.02562 * 8 7 5 26 26 H 1.09003 * 113.76243 * 108.09980 * 14 13 2 27 27 H 1.08998 * 113.86131 * 336.74211 * 14 13 2 28 28 H 1.08996 * 113.73448 * 269.25377 * 15 14 13 29 29 H 1.08999 * 109.47227 * 180.02562 * 17 16 15 30 30 H 1.08997 * 109.47181 * 59.99981 * 17 16 15 31 31 H 1.09006 * 109.46923 * 299.99904 * 17 16 15 32 32 H 1.08999 * 109.47452 * 293.53925 * 18 16 15 33 33 H 1.09000 * 109.46792 * 53.53662 * 18 16 15 34 34 H 1.08993 * 109.47237 * 173.53308 * 18 16 15 35 35 H 1.09001 * 113.75809 * 23.24413 * 19 13 2 36 36 H 1.08997 * 113.82522 * 251.81237 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 3.5390 -0.5877 -1.3296 6 1 4.0655 0.0264 -0.6141 7 6 4.2381 -1.2495 -2.3166 8 7 3.5968 -1.9971 -3.1882 9 14 6.0961 -1.0845 -2.4160 10 1 6.7320 -2.1483 -1.5980 11 1 6.5303 -1.2209 -3.8294 12 1 6.5031 0.2470 -1.8994 13 7 2.0197 -0.6924 1.1995 14 6 1.5022 -0.0528 2.4293 15 6 2.9216 -0.2335 2.9971 16 7 3.4091 0.9290 3.7514 17 6 2.6548 1.1001 5.0003 18 6 4.8495 0.8177 4.0174 19 6 3.3993 -0.2675 1.5341 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 1.7716 -1.7764 -1.1945 24 1 1.5876 -0.2768 -2.1356 25 1 4.0887 -2.4630 -3.8824 26 1 0.7445 -0.6424 2.9455 27 1 1.2120 0.9893 2.2957 28 1 3.0654 -1.1748 3.5275 29 1 3.0357 1.9679 5.5388 30 1 2.7686 0.2096 5.6184 31 1 1.5999 1.2502 4.7700 32 1 5.0305 -0.0172 4.6945 33 1 5.3798 0.6472 3.0805 34 1 5.2069 1.7403 4.4745 35 1 3.6659 0.7117 1.1363 36 1 4.1545 -1.0282 1.3362 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829179389.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:17 Heat of formation + Delta-G solvation = 35.673033 kcal Electronic energy + Delta-G solvation = -14845.733152 eV Core-core repulsion = 12558.967125 eV Total energy + Delta-G solvation = -2286.766027 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.72410 -36.16257 -33.37697 -31.75599 -28.01291 -27.39850 -26.39629 -24.78740 -23.37175 -22.32536 -19.25170 -19.14663 -16.25917 -15.76960 -15.55818 -14.84330 -14.44618 -14.18777 -13.40798 -13.25052 -12.99773 -12.33646 -12.14612 -11.81661 -11.62481 -11.57801 -11.47389 -11.29844 -11.08222 -10.76294 -10.42353 -10.40053 -10.05423 -9.94103 -9.06319 -8.86509 -8.29246 -8.25514 -7.94906 -5.91744 -3.91731 3.34946 3.41500 3.43683 4.04595 4.51487 4.68581 4.82737 5.23671 5.39257 5.41390 5.45451 5.59205 5.64073 5.71570 5.84276 5.91322 5.94298 5.99629 6.01876 6.08408 6.25500 6.40755 6.52069 6.63521 6.75258 6.96276 7.10665 7.25203 7.32555 7.61003 7.76026 8.07164 8.14391 8.50677 9.12814 9.70101 11.20060 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.028735 B = 0.009781 C = 0.007567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.184472 B = 2861.873662 C = 3699.287331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.055 3.945 3 H 0.035 0.965 4 C 0.032 3.968 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.885 3.115 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.460 5.460 14 C 0.010 3.990 15 C 0.034 3.966 16 N -0.538 5.538 17 C 0.026 3.974 18 C 0.025 3.975 19 C 0.046 3.954 20 H 0.056 0.944 21 H 0.039 0.961 22 H 0.053 0.947 23 H 0.029 0.971 24 H 0.014 0.986 25 H 0.258 0.742 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.022 0.978 31 H 0.067 0.933 32 H 0.022 0.978 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.615 5.031 13.421 14.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.054 4.054 3 H 0.053 0.947 4 C -0.005 4.005 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.713 3.287 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.183 5.183 14 C -0.119 4.119 15 C -0.074 4.074 16 N -0.263 5.263 17 C -0.122 4.122 18 C -0.124 4.124 19 C -0.083 4.083 20 H 0.075 0.925 21 H 0.058 0.942 22 H 0.072 0.928 23 H 0.047 0.953 24 H 0.032 0.968 25 H 0.068 0.932 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.085 0.915 32 H 0.041 0.959 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.819 4.653 12.806 13.746 hybrid contribution 1.329 0.163 0.410 1.400 sum -0.489 4.815 13.215 14.074 Atomic orbital electron populations 1.21871 0.96483 1.01582 1.00142 1.22310 0.93289 0.96049 0.93711 0.94683 1.19097 0.95624 0.96253 0.89537 1.21343 0.92460 1.28309 1.12912 0.92306 1.24977 0.97927 0.95538 0.95921 1.69968 1.35298 1.31298 1.17075 0.86704 0.86464 0.78351 0.77154 1.20766 1.21375 1.19961 1.68559 1.03439 1.46072 1.00276 1.23883 0.95360 0.98733 0.93966 1.23894 0.97042 0.91357 0.95155 1.62288 1.03671 1.40320 1.19975 1.22313 0.99174 0.99939 0.90797 1.22332 0.88636 1.00106 1.01285 1.23844 0.93740 1.00711 0.90004 0.92496 0.94209 0.92768 0.95287 0.96771 0.93198 0.90725 0.91323 0.91516 0.91844 0.95971 0.91464 0.95913 0.90960 0.91759 0.90626 0.89563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.05 37.16 0.34 -2.26 16 2 C 0.06 1.18 2.00 -67.71 -0.14 1.04 16 3 H 0.04 0.77 7.57 -51.93 -0.39 0.38 16 4 C 0.03 0.85 4.65 -27.88 -0.13 0.72 16 5 C -0.51 -14.31 8.10 -34.44 -0.28 -14.59 16 6 H 0.06 1.58 5.22 -52.49 -0.27 1.30 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 8 N -0.90 -27.29 13.29 55.43 0.74 -26.56 16 9 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.46 -9.25 5.98 -230.22 -1.38 -10.62 16 14 C 0.01 0.16 5.70 -2.76 -0.02 0.15 16 15 C 0.03 0.54 3.33 -69.40 -0.23 0.31 16 16 N -0.54 -7.54 4.96 -244.60 -1.21 -8.75 16 17 C 0.03 0.30 9.46 60.06 0.57 0.87 16 18 C 0.02 0.31 9.55 60.07 0.57 0.88 16 19 C 0.05 0.88 4.66 -2.63 -0.01 0.87 16 20 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 21 H 0.04 0.63 6.88 -51.93 -0.36 0.27 16 22 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 26 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.07 1.11 7.53 -51.93 -0.39 0.71 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.74 7.59 -51.93 -0.39 0.34 16 32 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.97 7.52 -51.93 -0.39 0.58 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 1.54 6.77 -51.93 -0.35 1.19 16 36 H 0.09 1.78 8.01 -51.93 -0.42 1.36 16 LS Contribution 283.85 15.07 4.28 4.28 Total: -1.00 -30.09 283.85 -8.35 -38.44 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -6.33 Total: -3.09 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: 0.58 Total: -10.47 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: -1.85 Total: -45.93 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.09 -8.35 -38.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829179389.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.112 kcal (2) G-P(sol) polarization free energy of solvation -30.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds